HHsearch alignment for GI: 254780766 and conserved domain: cd03225
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.66 E-value=1.2e-07 Score=69.18 Aligned_cols=76 Identities=26% Similarity=0.357 Sum_probs=63.1
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHCC
Q ss_conf 312205899999999999999999870899789980122015989999999997417---98099980696785432126
Q gi|254780766|r 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTGTDKSVFDSLNET 361 (375)
Q Consensus 285 ~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~---~~Qv~iTt~~~~~~~~~~~~ 361 (375)
T Consensus 133 ~~LSGGqkQrv~iAral~---------~~P~ililDEPTsgLD~~~~~~i~~~l~~l~~~g~tii~itHdl~~~~~~~dr 203 (211)
T cd03225 133 FTLSGGQKQRVAIAGVLA---------MDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADR 203 (211)
T ss_pred HHCCHHHHHHHHHHHHHH---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCE
T ss_conf 459998999999999997---------59999999798555899999999999999997899999992599999997999
Q ss_pred EEEEEECCCE
Q ss_conf 0079972896
Q gi|254780766|r 362 AKFMRISNHQ 371 (375)
Q Consensus 362 ~~~~~i~~g~ 371 (375)
T Consensus 204 --i~~m~~G~ 211 (211)
T cd03225 204 --VIVLEDGK 211 (211)
T ss_pred --EEEEECCC
T ss_conf --99982988