HHsearch alignment for GI: 254780766 and conserved domain: cd03226
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.78 E-value=4.8e-08 Score=71.71 Aligned_cols=78 Identities=14% Similarity=0.260 Sum_probs=65.0
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHCC
Q ss_conf 312205899999999999999999870899789980122015989999999997417---98099980696785432126
Q gi|254780766|r 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTGTDKSVFDSLNET 361 (375)
Q Consensus 285 ~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~---~~Qv~iTt~~~~~~~~~~~~ 361 (375)
T Consensus 125 ~~LSGGqkQrv~iA~aL~---------~~P~illLDEPt~gLD~~~~~~i~~ll~~l~~~g~tvi~itHdl~~~~~~~dr 195 (205)
T cd03226 125 LSLSGGQKQRLAIAAALL---------SGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDR 195 (205)
T ss_pred HHCCHHHHHHHHHHHHHH---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCE
T ss_conf 128999999999999997---------59999999799765899999999999999997999999980398999997999
Q ss_pred EEEEEECCCEEE
Q ss_conf 007997289689
Q gi|254780766|r 362 AKFMRISNHQAL 373 (375)
Q Consensus 362 ~~~~~i~~g~~~ 373 (375)
T Consensus 196 --i~vl~~G~iV 205 (205)
T cd03226 196 --VLLLANGAIV 205 (205)
T ss_pred --EEEEECCEEC
T ss_conf --9998199999