HHsearch alignment for GI: 254780766 and conserved domain: cd03228
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.27 E-value=1.3e-10 Score=88.47 Aligned_cols=73 Identities=18% Similarity=0.365 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHCCEEE
Q ss_conf 2205899999999999999999870899789980122015989999999997417--98099980696785432126007
Q gi|254780766|r 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKF 364 (375)
Q Consensus 287 ~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~--~~Qv~iTt~~~~~~~~~~~~~~~ 364 (375)
T Consensus 97 LSgGq~Qri~lARal~---------~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~Tvi~vtH~~~~~~~-~D--~v 164 (171)
T cd03228 97 LSGGQRQRIAIARALL---------RDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD-AD--RI 164 (171)
T ss_pred CCHHHHHHHHHHHHHH---------HCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH-CC--EE
T ss_conf 4488999999999997---------489989995776679989999999999998099989999579999970-99--99
Q ss_pred EEECCCE
Q ss_conf 9972896
Q gi|254780766|r 365 MRISNHQ 371 (375)
Q Consensus 365 ~~i~~g~ 371 (375)
T Consensus 165 ~~l~~Gk 171 (171)
T cd03228 165 IVLDDGR 171 (171)
T ss_pred EEEECCC
T ss_conf 9981969