HHsearch alignment for GI: 254780766 and conserved domain: cd03229

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.41  E-value=1.9e-06  Score=61.31  Aligned_cols=74  Identities=23%  Similarity=0.279  Sum_probs=61.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC----CCCEEEEECCHHHHHHHHCCE
Q ss_conf             2205899999999999999999870899789980122015989999999997417----980999806967854321260
Q gi|254780766|r  287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTGTDKSVFDSLNETA  362 (375)
Q Consensus       287 ~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~----~~Qv~iTt~~~~~~~~~~~~~  362 (375)
T Consensus       101 LSGGq~QRvaIARAL~---------~~P~ill~DEPts~LD~~~~~~i~~~l~~l~~~~~~t~i~vTHd~~~a~~~aDr-  170 (178)
T cd03229         101 LSGGQQQRVALARALA---------MDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADR-  170 (178)
T ss_pred             CCCHHHHHHHHHHHHH---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCCE-
T ss_conf             7726889999999985---------299999970897647999999999999999996499999998999999986999-


Q ss_pred             EEEEECCCE
Q ss_conf             079972896
Q gi|254780766|r  363 KFMRISNHQ  371 (375)
Q Consensus       363 ~~~~i~~g~  371 (375)
T Consensus       171 -i~vm~~Gk  178 (178)
T cd03229         171 -VVVLRDGK  178 (178)
T ss_pred             -EEEEECCC
T ss_conf             -99992889