HHsearch alignment for GI: 254780766 and conserved domain: cd03230
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=6.6e-12 Score=96.93 Aligned_cols=75 Identities=19% Similarity=0.305 Sum_probs=63.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHCCEE
Q ss_conf 2205899999999999999999870899789980122015989999999997417---9809998069678543212600
Q gi|254780766|r 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTGTDKSVFDSLNETAK 363 (375)
Q Consensus 287 ~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~---~~Qv~iTt~~~~~~~~~~~~~~ 363 (375)
T Consensus 96 LSgG~kqrv~ia~al~---------~~p~lllLDEPt~gLD~~~~~~i~~~i~~l~~~g~tvi~~tH~l~~~~~~~dr-- 164 (173)
T cd03230 96 LSGGMKQRLALAQALL---------HDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDR-- 164 (173)
T ss_pred CCHHHHHHHHHHHHHH---------CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCE--
T ss_conf 3989999999999996---------49999999088657999999999999999996899999992838999986999--
Q ss_pred EEEECCCEE
Q ss_conf 799728968
Q gi|254780766|r 364 FMRISNHQA 372 (375)
Q Consensus 364 ~~~i~~g~~ 372 (375)
T Consensus 165 i~vl~~G~i 173 (173)
T cd03230 165 VAILNNGRI 173 (173)
T ss_pred EEEEECCCC
T ss_conf 999939999