HHsearch alignment for GI: 254780766 and conserved domain: cd03231
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.31 E-value=3.1e-06 Score=59.91 Aligned_cols=69 Identities=20% Similarity=0.279 Sum_probs=56.0
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHC
Q ss_conf 331220589999999999999999987089978998012201598999999999741---79809998069678543212
Q gi|254780766|r 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD---IGSQIFMTGTDKSVFDSLNE 360 (375)
Q Consensus 284 ~~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~---~~~Qv~iTt~~~~~~~~~~~ 360 (375)
T Consensus 123 ~~~LSgGqkqRv~lA~al~---------~~p~llllDEPt~gLD~~s~~~~~~~l~~~~~~g~~ii~~sH~~~~~~~~~~ 193 (201)
T cd03231 123 VAQLSAGQQRRVALARLLL---------SGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGA 193 (201)
T ss_pred HHHCCHHHHHHHHHHHHHH---------CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCC
T ss_conf 2347999999999999997---------4999999808865579999999999999998689999999867146787229
Q ss_pred C
Q ss_conf 6
Q gi|254780766|r 361 T 361 (375)
Q Consensus 361 ~ 361 (375)
T Consensus 194 r 194 (201)
T cd03231 194 R 194 (201)
T ss_pred C
T ss_conf 6