HHsearch alignment for GI: 254780766 and conserved domain: cd03232
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.51 E-value=7.7e-05 Score=50.80 Aligned_cols=31 Identities=23% Similarity=0.476 Sum_probs=26.4
Q ss_pred HHHEEEECCCC-EEEEECCCCCCHHHHHHHHH
Q ss_conf 45536732798-79998689986444899999
Q gi|254780766|r 18 YASLRLVFDAQ-HTIFVGDNGVGKTNILEAIS 48 (375)
Q Consensus 18 ~~~~~i~f~~~-~n~i~G~NG~GKT~iLEAI~ 48 (375)
T Consensus 23 L~~is~~i~~Ge~~~llGpnGaGKSTLl~~l~ 54 (192)
T cd03232 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLA 54 (192)
T ss_pred EECCEEEEECCEEEEEECCCCCCHHHHHHHHH
T ss_conf 98838899288399999999998899999983