HHsearch alignment for GI: 254780766 and conserved domain: cd03235
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.77 E-value=7e-08 Score=70.63 Aligned_cols=79 Identities=23% Similarity=0.352 Sum_probs=64.8
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHC
Q ss_conf 3312205899999999999999999870899789980122015989999999997417---9809998069678543212
Q gi|254780766|r 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTGTDKSVFDSLNE 360 (375)
Q Consensus 284 ~~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~---~~Qv~iTt~~~~~~~~~~~ 360 (375)
T Consensus 130 ~~~LSgGqkQRv~iAraL~---------~~P~lLlLDEPtsgLD~~~~~~~~~~i~~l~~~g~tii~vtHdl~~~~~~~d 200 (213)
T cd03235 130 IGELSGGQQQRVLLARALV---------QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFD 200 (213)
T ss_pred HHHCCHHHHHHHHHHHHHH---------CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCC
T ss_conf 4657989999999999996---------6999999818866789999999999999999689999999079899999799
Q ss_pred CEEEEEECCCEEEE
Q ss_conf 60079972896895
Q gi|254780766|r 361 TAKFMRISNHQALC 374 (375)
Q Consensus 361 ~~~~~~i~~g~~~~ 374 (375)
T Consensus 201 r--ii~l-~~~iia 211 (213)
T cd03235 201 R--VLLL-NRTVVA 211 (213)
T ss_pred E--EEEE-CCCEEE
T ss_conf 9--9999-995983