HHsearch alignment for GI: 254780766 and conserved domain: cd03236
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.57 E-value=5e-07 Score=65.08 Aligned_cols=83 Identities=23% Similarity=0.246 Sum_probs=66.8
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHC
Q ss_conf 3312205899999999999999999870899789980122015989999999997417---9809998069678543212
Q gi|254780766|r 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTGTDKSVFDSLNE 360 (375)
Q Consensus 284 ~~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~---~~Qv~iTt~~~~~~~~~~~ 360 (375)
T Consensus 137 ~~~LSGGq~QRvaIAraL~---------~~P~iLlLDEPTs~LD~~~~~~v~~li~~L~~~G~Tvi~vtHDl~~~~~laD 207 (255)
T cd03236 137 IDQLSGGELQRVAIAAALA---------RDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSD 207 (255)
T ss_pred HHHCCHHHHHHHHHHHHHC---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCC
T ss_conf 5558999999999999736---------8999999979876589999999999999999789999999078999998699
Q ss_pred CEEEEEECCCEEEEC
Q ss_conf 600799728968959
Q gi|254780766|r 361 TAKFMRISNHQALCI 375 (375)
Q Consensus 361 ~~~~~~i~~g~~~~~ 375 (375)
T Consensus 208 rI~Vm~G~~~~~~~~ 222 (255)
T cd03236 208 YIHCLYGEPGAYGVV 222 (255)
T ss_pred EEEEEECCCCEEEEE
T ss_conf 899981898038875