HHsearch alignment for GI: 254780766 and conserved domain: cd03236

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.57  E-value=5e-07  Score=65.08  Aligned_cols=83  Identities=23%  Similarity=0.246  Sum_probs=66.8

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHC
Q ss_conf             3312205899999999999999999870899789980122015989999999997417---9809998069678543212
Q gi|254780766|r  284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTGTDKSVFDSLNE  360 (375)
Q Consensus       284 ~~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~---~~Qv~iTt~~~~~~~~~~~  360 (375)
T Consensus       137 ~~~LSGGq~QRvaIAraL~---------~~P~iLlLDEPTs~LD~~~~~~v~~li~~L~~~G~Tvi~vtHDl~~~~~laD  207 (255)
T cd03236         137 IDQLSGGELQRVAIAAALA---------RDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSD  207 (255)
T ss_pred             HHHCCHHHHHHHHHHHHHC---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCC
T ss_conf             5558999999999999736---------8999999979876589999999999999999789999999078999998699


Q ss_pred             CEEEEEECCCEEEEC
Q ss_conf             600799728968959
Q gi|254780766|r  361 TAKFMRISNHQALCI  375 (375)
Q Consensus       361 ~~~~~~i~~g~~~~~  375 (375)
T Consensus       208 rI~Vm~G~~~~~~~~  222 (255)
T cd03236         208 YIHCLYGEPGAYGVV  222 (255)
T ss_pred             EEEEEECCCCEEEEE
T ss_conf             899981898038875