HHsearch alignment for GI: 254780766 and conserved domain: cd03236
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.91 E-value=0.00067 Score=44.67 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=19.2
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 879998689986444899999
Q gi|254780766|r 28 QHTIFVGDNGVGKTNILEAIS 48 (375)
Q Consensus 28 ~~n~i~G~NG~GKT~iLEAI~ 48 (375)
T Consensus 27 Ei~gLiGpNGaGKSTLlk~i~ 47 (255)
T cd03236 27 QVLGLVGPNGIGKSTALKILA 47 (255)
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 099998999970999999996