HHsearch alignment for GI: 254780766 and conserved domain: cd03238

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.49  E-value=0.00011  Score=49.70  Aligned_cols=37  Identities=16%  Similarity=0.351  Sum_probs=29.3

Q ss_pred             ECCCCHHHEEEECCCC-EEEEECCCCCCHHHHHHHHHH
Q ss_conf             2232545536732798-799986899864448999999
Q gi|254780766|r   13 SEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISF   49 (375)
Q Consensus        13 ~nFR~~~~~~i~f~~~-~n~i~G~NG~GKT~iLEAI~~   49 (375)
T Consensus         6 ~~~~aL~~isl~i~~Ge~~~iiG~nGsGKSTLl~~~~~   43 (176)
T cd03238           6 ANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CCEECCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf             65354675487888998999999999989999998887