HHsearch alignment for GI: 254780766 and conserved domain: cd03239
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.80 E-value=1.4e-18 Score=140.42 Aligned_cols=68 Identities=25% Similarity=0.402 Sum_probs=57.6
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC---CCCEEEEECCHHHHHHH
Q ss_conf 12205899999999999999999870899789980122015989999999997417---98099980696785432
Q gi|254780766|r 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTGTDKSVFDSL 358 (375)
Q Consensus 286 ~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~---~~Qv~iTt~~~~~~~~~ 358 (375)
T Consensus 94 lLSGGEksl~alal~~ai-----~~~~p~p~~iLDEvdAaLD~~N~~r~~~~i~el~~~~sQfIiITH~~~~m~~a 164 (178)
T cd03239 94 ILSGGEKSLSALALIFAL-----QEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENA 164 (178)
T ss_pred CCCCCHHHHHHHHHHHHH-----HCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHC
T ss_conf 167525899999999999-----71389966998276554798899999999999973899899998689999747