HHsearch alignment for GI: 254780766 and conserved domain: cd03241
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=1.3e-17 Score=134.07 Aligned_cols=228 Identities=20% Similarity=0.227 Sum_probs=153.1
Q ss_pred EEEEEEECCCCHHHEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCEEEEEEEECCC----
Q ss_conf 9999992232545536732798799986899864448999999728866667873688748983205898886285----
Q gi|254780766|r 7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM---- 82 (375)
Q Consensus 7 i~~l~i~nFR~~~~~~i~f~~~~n~i~G~NG~GKT~iLEAI~~l~~gksfR~~~~~~li~~~~~~~~~~~~~~~~~---- 82 (375)
T Consensus 1 L~~L~IkNfalId~l~l~F~~GlnVlTGETGAGKSIlidAL~lllG~R-----a~~~~IR~g~~~a~v-ea~F~i~~~~~ 74 (276)
T cd03241 1 LLELSIKNFALIEELELDFEEGLTVLTGETGAGKSILLDALSLLLGGR-----ASADLIRSGAEKAVV-EGVFDISDEEE 74 (276)
T ss_pred CCEEEEEEEEEEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHCCC-----CCCCCCCCCCCEEEE-EEEEECCCCHH
T ss_conf 968999608989887982599975887899888999999999962899-----884533588850899-99997599668
Q ss_pred ----------CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEECCHHHCCCCCCHHHHHHCCCCCCCC
Q ss_conf ----------32002667530024663332112577433321012333-4520210011001268723412101000135
Q gi|254780766|r 83 ----------EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL-RISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151 (375)
Q Consensus 83 ----------~~~~~~~~~~~~~~~~~~k~~~~n~~~~~~~~~l~~~l-~~v~~~p~~~~li~~~p~~RR~flD~~i~~~ 151 (375)
T Consensus 75 ~~~~l~~~~~~~d~~liirR~i~~~GrS-r~~INg~~vt~-~~L~~l~~~LidIHgQhe~q~Ll~~~~h~~lLD~~~--- 149 (276)
T cd03241 75 AKALLLELGIEDDDDLIIRREISRKGRS-RYFINGQSVTL-KLLRELGSLLVDIHGQHDHQNLLNPERQLDLLDGGL--- 149 (276)
T ss_pred HHHHHHHCCCCCCCCEEEEEEECCCCCC-EEEECCEECCH-HHHHHHHHHEEEECCCCCCHHHCCHHHHHHHHCCCC---
T ss_conf 8999973799778844999998689970-69999998379-999999740089907961055549867999876986---
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 84677888777766666798863056543210024565327999999999999999999999998531643011220156
Q gi|254780766|r 152 DPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231 (375)
Q Consensus 152 ~~~y~~~l~~y~K~LkqRN~lLk~~~~d~~~l~~~~~qla~~~~~I~~~R~~~l~~l~~~l~~~~~~~~~~~~~~~l~~~ 231 (375)
T Consensus 150 --------------------------------d~ie----------------f~--------------------~~--~~ 159 (276)
T cd03241 150 --------------------------------DDVE----------------FL--------------------FS--TN 159 (276)
T ss_pred --------------------------------CCHH----------------HH--------------------CC--CC
T ss_conf --------------------------------1002----------------12--------------------15--99
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCHHHCCEEECCCCCCEEEECCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 66765589678888765455311100000000025732001100124551023312205899999999999999999870
Q gi|254780766|r 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311 (375)
Q Consensus 232 ~~~~~~~~~~~~~e~~~~~L~~~~~~d~~~~~t~~Gphr~d~~~~~~~~~~~~~~~S~Gqqk~~~l~l~La~~~~~~~~~ 311 (375)
T Consensus 160 ~g~----~~--------~------------------~--------------l~~~aSgGElSRi~LAlk~~-----~~~~ 190 (276)
T cd03241 160 PGE----PL--------K------------------P--------------LAKIASGGELSRLMLALKAI-----LARK 190 (276)
T ss_pred CCC----CC--------C------------------H--------------HHHHHCHHHHHHHHHHHHHH-----HCCC
T ss_conf 899----75--------2------------------4--------------67662764899999999999-----6278
Q ss_pred CCCCEEEEECCHHCCCHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHCCEEE
Q ss_conf 899789980122015989999999997417--98099980696785432126007
Q gi|254780766|r 312 GFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKF 364 (375)
Q Consensus 312 ~~~pilLiDdi~s~LD~~~~~~ll~~l~~~--~~Qv~iTt~~~~~~~~~~~~~~~ 364 (375)
T Consensus 191 ~~~~tliFDEID~GigG~~A~~vg~~l~~ls~~~QVi~ITHlpQvAa~ad~H~~V 245 (276)
T cd03241 191 DAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLV 245 (276)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHCCCCEEEE
T ss_conf 8998579844578989899999999999984798799981779988413767999