HHsearch alignment for GI: 254780766 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.76 E-value=0.0014 Score=42.61 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=24.4
Q ss_pred HHHEEEECCCC-EEEEECCCCCCHHHHHHHHH
Q ss_conf 45536732798-79998689986444899999
Q gi|254780766|r 18 YASLRLVFDAQ-HTIFVGDNGVGKTNILEAIS 48 (375)
Q Consensus 18 ~~~~~i~f~~~-~n~i~G~NG~GKT~iLEAI~ 48 (375)
T Consensus 18 L~ninl~i~~Ge~i~IvG~sGsGKSTLl~ll~ 49 (234)
T cd03251 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIP 49 (234)
T ss_pred EECEEEEECCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 53608998799999999899982999999996