HHsearch alignment for GI: 254780766 and conserved domain: cd03252
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.29 E-value=1.2e-05 Score=56.15 Aligned_cols=78 Identities=21% Similarity=0.340 Sum_probs=60.7
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHCCE
Q ss_conf 312205899999999999999999870899789980122015989999999997417--980999806967854321260
Q gi|254780766|r 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETA 362 (375)
Q Consensus 285 ~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~--~~Qv~iTt~~~~~~~~~~~~~ 362 (375)
T Consensus 137 ~~LSgGqkQRlalARall---------~~~~illlDEpts~LD~~te~~i~~~l~~~~~~~Tvi~itHrl~~l~~-aD-- 204 (237)
T cd03252 137 AGLSGGQRQRIAIARALI---------HNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKN-AD-- 204 (237)
T ss_pred CCCCHHHHHHHHHHHHHH---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH-CC--
T ss_conf 848999999999999996---------699999994864568989999999999998299999998078889984-99--
Q ss_pred EEEEECCCEEEE
Q ss_conf 079972896895
Q gi|254780766|r 363 KFMRISNHQALC 374 (375)
Q Consensus 363 ~~~~i~~g~~~~ 374 (375)
T Consensus 205 ~Iivl~~G~iv~ 216 (237)
T cd03252 205 RIIVMEKGRIVE 216 (237)
T ss_pred EEEEEECCEEEE
T ss_conf 999998999999