HHsearch alignment for GI: 254780766 and conserved domain: cd03256
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.74 E-value=9.7e-08 Score=69.72 Aligned_cols=79 Identities=16% Similarity=0.250 Sum_probs=67.2
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC----CCCEEEEECCHHHHHHHHC
Q ss_conf 312205899999999999999999870899789980122015989999999997417----9809998069678543212
Q gi|254780766|r 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTGTDKSVFDSLNE 360 (375)
Q Consensus 285 ~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~----~~Qv~iTt~~~~~~~~~~~ 360 (375)
T Consensus 143 ~~LSGGq~QRVaIARAL~---------~~P~ill~DEPts~LD~~~~~~i~~ll~~l~~~~g~Tii~vtHdl~~a~~~ad 213 (241)
T cd03256 143 DQLSGGQQQRVAIARALM---------QQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYAD 213 (241)
T ss_pred CCCCHHHHHHHHHHHHHH---------CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCC
T ss_conf 414802899999999985---------59998996287665899999999999999998519899999579899999699
Q ss_pred CEEEEEECCCEEEE
Q ss_conf 60079972896895
Q gi|254780766|r 361 TAKFMRISNHQALC 374 (375)
Q Consensus 361 ~~~~~~i~~g~~~~ 374 (375)
T Consensus 214 r--i~~l~~G~iv~ 225 (241)
T cd03256 214 R--IVGLKDGRIVF 225 (241)
T ss_pred E--EEEEECCEEEE
T ss_conf 8--99996999999