HHsearch alignment for GI: 254780766 and conserved domain: cd03257
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.65 E-value=1.3e-07 Score=68.92 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=66.7
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHCCC----CEEEEECCHHHHHHHHC
Q ss_conf 31220589999999999999999987089978998012201598999999999741798----09998069678543212
Q gi|254780766|r 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS----QIFMTGTDKSVFDSLNE 360 (375)
Q Consensus 285 ~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~~~----Qv~iTt~~~~~~~~~~~ 360 (375)
T Consensus 144 ~~LSGGq~QRv~iAraL~---------~~P~iLllDEPTs~LD~~~~~~i~~~l~~l~~~~~~tii~vtHd~~~~~~~aD 214 (228)
T cd03257 144 HELSGGQRQRVAIARALA---------LNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIAD 214 (228)
T ss_pred CCCCHHHHHHHHHHHHCC---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCC
T ss_conf 327988999999821104---------79999999488764799999999999999998509899998689999999699
Q ss_pred CEEEEEECCCEEEE
Q ss_conf 60079972896895
Q gi|254780766|r 361 TAKFMRISNHQALC 374 (375)
Q Consensus 361 ~~~~~~i~~g~~~~ 374 (375)
T Consensus 215 r--v~vm~~G~iv~ 226 (228)
T cd03257 215 R--VAVMYAGKIVE 226 (228)
T ss_pred E--EEEEECCEEEE
T ss_conf 9--99997989998