HHsearch alignment for GI: 254780766 and conserved domain: cd03258
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.38 E-value=2.3e-06 Score=60.79 Aligned_cols=79 Identities=22% Similarity=0.331 Sum_probs=66.0
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC----CCCEEEEECCHHHHHHHHC
Q ss_conf 312205899999999999999999870899789980122015989999999997417----9809998069678543212
Q gi|254780766|r 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTGTDKSVFDSLNE 360 (375)
Q Consensus 285 ~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~----~~Qv~iTt~~~~~~~~~~~ 360 (375)
T Consensus 139 ~eLSGGq~QRVaIARAL~---------~~P~lllaDEPTs~LD~~~~~~il~ll~~l~~e~g~t~i~vTHDl~~~~~~ad 209 (233)
T cd03258 139 AQLSGGQKQRVGIARALA---------NNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICD 209 (233)
T ss_pred CCCCHHHHHHHHHHHHHH---------CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCC
T ss_conf 526778889999999983---------39989996597664698899999999999999729899998989999998699
Q ss_pred CEEEEEECCCEEEE
Q ss_conf 60079972896895
Q gi|254780766|r 361 TAKFMRISNHQALC 374 (375)
Q Consensus 361 ~~~~~~i~~g~~~~ 374 (375)
T Consensus 210 r--v~vm~~G~Ive 221 (233)
T cd03258 210 R--VAVMEKGEVVE 221 (233)
T ss_pred E--EEEEECCEEEE
T ss_conf 7--99997989999