HHsearch alignment for GI: 254780766 and conserved domain: cd03262
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.46 E-value=1e-06 Score=63.02 Aligned_cols=77 Identities=18% Similarity=0.301 Sum_probs=61.5
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHCC
Q ss_conf 312205899999999999999999870899789980122015989999999997417---98099980696785432126
Q gi|254780766|r 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTGTDKSVFDSLNET 361 (375)
Q Consensus 285 ~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~---~~Qv~iTt~~~~~~~~~~~~ 361 (375)
T Consensus 134 ~~LSGGqqQRVAIARALa---------~~P~ilL~DEPts~LD~~~~~~i~~ll~~l~~~g~T~i~VTHD~~~a~~~aDr 204 (213)
T cd03262 134 AQLSGGQQQRVAIARALA---------MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADR 204 (213)
T ss_pred HHCCCHHHHHHHHHHHHC---------CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCE
T ss_conf 446929999999999963---------79999997088887798999999999999986299999999899999996898
Q ss_pred EEEEEECCCEE
Q ss_conf 00799728968
Q gi|254780766|r 362 AKFMRISNHQA 372 (375)
Q Consensus 362 ~~~~~i~~g~~ 372 (375)
T Consensus 205 --i~~l~~G~I 213 (213)
T cd03262 205 --VIFMDDGRI 213 (213)
T ss_pred --EEEEECCCC
T ss_conf --999979999