HHsearch alignment for GI: 254780766 and conserved domain: cd03263
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.85 E-value=3.2e-08 Score=72.86 Aligned_cols=80 Identities=26% Similarity=0.427 Sum_probs=68.1
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHCCE
Q ss_conf 312205899999999999999999870899789980122015989999999997417--980999806967854321260
Q gi|254780766|r 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETA 362 (375)
Q Consensus 285 ~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~--~~Qv~iTt~~~~~~~~~~~~~ 362 (375)
T Consensus 132 ~~LSgG~kqrv~ia~al~---------~~P~lliLDEPt~gLD~~~~~~i~~~l~~~~~~~tii~~tH~l~e~~~l~dr- 201 (220)
T cd03263 132 RTLSGGMKRKLSLAIALI---------GGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDR- 201 (220)
T ss_pred HHCCHHHHHHHHHHHHHH---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCE-
T ss_conf 678999999999999995---------6999999958876889999999999999984899899996878999996999-
Q ss_pred EEEEECCCEEEEC
Q ss_conf 0799728968959
Q gi|254780766|r 363 KFMRISNHQALCI 375 (375)
Q Consensus 363 ~~~~i~~g~~~~~ 375 (375)
T Consensus 202 -i~vl~~G~i~~~ 213 (220)
T cd03263 202 -IAIMSDGKLRCI 213 (220)
T ss_pred -EEEEECCEEEEE
T ss_conf -999989999998