HHsearch alignment for GI: 254780766 and conserved domain: cd03265
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.84 E-value=2.2e-08 Score=73.98 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=68.6
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC----CCCEEEEECCHHHHHHHH
Q ss_conf 3312205899999999999999999870899789980122015989999999997417----980999806967854321
Q gi|254780766|r 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTGTDKSVFDSLN 359 (375)
Q Consensus 284 ~~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~----~~Qv~iTt~~~~~~~~~~ 359 (375)
T Consensus 129 ~~~LS~G~kqrv~ia~Al~---------~~P~lliLDEPt~gLDp~~~~~i~~~i~~l~~~~g~tiilssH~l~eve~l~ 199 (220)
T cd03265 129 VKTYSGGMRRRLEIARSLV---------HRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLC 199 (220)
T ss_pred HHHCCHHHHHHHHHHHHHH---------CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHC
T ss_conf 4347999999999999985---------6999899808866889999999999999999838979999888889999869
Q ss_pred CCEEEEEECCCEEEEC
Q ss_conf 2600799728968959
Q gi|254780766|r 360 ETAKFMRISNHQALCI 375 (375)
Q Consensus 360 ~~~~~~~i~~g~~~~~ 375 (375)
T Consensus 200 dr--i~il~~G~ii~~ 213 (220)
T cd03265 200 DR--VAIIDHGRIIAE 213 (220)
T ss_pred CE--EEEEECCEEEEE
T ss_conf 99--999979999998