HHsearch alignment for GI: 254780766 and conserved domain: cd03266
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.87 E-value=1.7e-08 Score=74.60 Aligned_cols=81 Identities=22% Similarity=0.268 Sum_probs=68.4
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHC
Q ss_conf 3312205899999999999999999870899789980122015989999999997417---9809998069678543212
Q gi|254780766|r 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTGTDKSVFDSLNE 360 (375)
Q Consensus 284 ~~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~---~~Qv~iTt~~~~~~~~~~~ 360 (375)
T Consensus 134 ~~~LS~G~kqrv~la~al~---------~~P~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~til~~sH~l~e~~~l~d 204 (218)
T cd03266 134 VGGFSTGMRQKVAIARALV---------HDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCD 204 (218)
T ss_pred HHHCCCHHHHHHHHHHHHH---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCC
T ss_conf 3227826889999999986---------6998999979876769999999999999998579999998987899999699
Q ss_pred CEEEEEECCCEEEEC
Q ss_conf 600799728968959
Q gi|254780766|r 361 TAKFMRISNHQALCI 375 (375)
Q Consensus 361 ~~~~~~i~~g~~~~~ 375 (375)
T Consensus 205 r--i~vl~~G~iv~~ 217 (218)
T cd03266 205 R--VVVLHRGRVVYE 217 (218)
T ss_pred E--EEEEECCEEEEE
T ss_conf 9--999989999987