HHsearch alignment for GI: 254780766 and conserved domain: cd03267
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.84 E-value=2.3e-08 Score=73.79 Aligned_cols=80 Identities=19% Similarity=0.252 Sum_probs=67.8
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC----CCCEEEEECCHHHHHHHH
Q ss_conf 3312205899999999999999999870899789980122015989999999997417----980999806967854321
Q gi|254780766|r 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTGTDKSVFDSLN 359 (375)
Q Consensus 284 ~~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~----~~Qv~iTt~~~~~~~~~~ 359 (375)
T Consensus 151 ~~~LSgG~rqrv~ia~aL~---------~~P~lllLDEPt~gLD~~~~~~i~~~l~~l~~~~g~till~tH~l~ev~~~~ 221 (236)
T cd03267 151 VRQLSLGQRMRAEIAAALL---------HEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALA 221 (236)
T ss_pred HHHCCHHHHHHHHHHHHHH---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHC
T ss_conf 4569999999999999996---------7999999979876889999999999999999738989999888789999979
Q ss_pred CCEEEEEECCCEEEE
Q ss_conf 260079972896895
Q gi|254780766|r 360 ETAKFMRISNHQALC 374 (375)
Q Consensus 360 ~~~~~~~i~~g~~~~ 374 (375)
T Consensus 222 Dr--v~vl~~Gkii~ 234 (236)
T cd03267 222 RR--VLVIDKGRLLY 234 (236)
T ss_pred CE--EEEEECCEEEE
T ss_conf 99--99998998998