HHsearch alignment for GI: 254780766 and conserved domain: cd03270

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.16  E-value=1.3e-05  Score=55.81  Aligned_cols=80  Identities=15%  Similarity=0.255  Sum_probs=58.4

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHCC
Q ss_conf             312205899999999999999999870899789980122015989999999997417---98099980696785432126
Q gi|254780766|r  285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTGTDKSVFDSLNET  361 (375)
Q Consensus       285 ~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~---~~Qv~iTt~~~~~~~~~~~~  361 (375)
T Consensus       136 ~~LSGGq~QRv~iAraL~~-----~--~~~~lliLDEPTsgLD~~~~~~i~~~i~~l~~~G~Tvi~VsHd~~~~~-~aDr  207 (226)
T cd03270         136 PTLSGGEAQRIRLATQIGS-----G--LTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR-AADH  207 (226)
T ss_pred             CCCCHHHHHHHHHHHHHHH-----C--CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHH-HCCE
T ss_conf             8689999999999999973-----8--987168832873337989999999999999976998999972578998-4899


Q ss_pred             EEEEEE------CCCEEEE
Q ss_conf             007997------2896895
Q gi|254780766|r  362 AKFMRI------SNHQALC  374 (375)
Q Consensus       362 ~~~~~i------~~g~~~~  374 (375)
T Consensus       208 --iivm~~G~~~~~G~iv~  224 (226)
T cd03270         208 --VIDIGPGAGVHGGEIVA  224 (226)
T ss_pred             --EEEECCCCCCCCCEEEE
T ss_conf             --99944997556968987