HHsearch alignment for GI: 254780766 and conserved domain: cd03293
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.53 E-value=8.9e-07 Score=63.42 Aligned_cols=79 Identities=25% Similarity=0.238 Sum_probs=64.0
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC----CCCEEEEECCHHHHHHHHC
Q ss_conf 312205899999999999999999870899789980122015989999999997417----9809998069678543212
Q gi|254780766|r 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTGTDKSVFDSLNE 360 (375)
Q Consensus 285 ~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~----~~Qv~iTt~~~~~~~~~~~ 360 (375)
T Consensus 130 ~~LSGGqkQRvaiARaL~---------~~P~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHdl~~a~~laD 200 (220)
T cd03293 130 HQLSGGMRQRVALARALA---------VDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLAD 200 (220)
T ss_pred HHCCHHHHHHHHHHHHHH---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCC
T ss_conf 129999999999999986---------69999998088765699999999999999998519999998888999999699
Q ss_pred CEEEEEECC--CEEEE
Q ss_conf 600799728--96895
Q gi|254780766|r 361 TAKFMRISN--HQALC 374 (375)
Q Consensus 361 ~~~~~~i~~--g~~~~ 374 (375)
T Consensus 201 r--i~vm~~r~GrIve 214 (220)
T cd03293 201 R--VVVLSARPGRIVA 214 (220)
T ss_pred E--EEEEECCCCEEEE
T ss_conf 9--9998589949999