HHsearch alignment for GI: 254780766 and conserved domain: cd03301

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.38  E-value=3.6e-06  Score=59.49  Aligned_cols=79  Identities=16%  Similarity=0.213  Sum_probs=63.6

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHC
Q ss_conf             31220589999999999999999987089978998012201598999999999741----79809998069678543212
Q gi|254780766|r  285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD----IGSQIFMTGTDKSVFDSLNE  360 (375)
Q Consensus       285 ~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~----~~~Qv~iTt~~~~~~~~~~~  360 (375)
T Consensus       129 ~~LSGGqkQRVaiARAl~---------~~P~lLLlDEP~saLD~~~r~~i~~~l~~~~~~~~~T~i~vTHd~~ea~~l~d  199 (213)
T cd03301         129 KQLSGGQRQRVALGRAIV---------REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMAD  199 (213)
T ss_pred             HHCCHHHHHHHHHHHHHH---------CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCC
T ss_conf             569999999999999987---------59998998388764298999999999999999749989999999899999699


Q ss_pred             CEEEEEECCCEEEE
Q ss_conf             60079972896895
Q gi|254780766|r  361 TAKFMRISNHQALC  374 (375)
Q Consensus       361 ~~~~~~i~~g~~~~  374 (375)
T Consensus       200 r--i~vm~~G~I~q  211 (213)
T cd03301         200 R--IAVMNDGQIQQ  211 (213)
T ss_pred             E--EEEEECCEEEE
T ss_conf             8--99998989999