>pfam02463 SMC_N RecF/RecN/SMC N terminal domain. This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.

Probab=99.88 E-value=6.6e-22 Score=162.20 Aligned_cols=141 Identities=23% Similarity=0.330 Sum_probs=95.9 Q ss_pred EEEEEEEECCCCHH-HEEEECCCCEEEEECCCCCCHHHHHHHHHHHCC---CCCCCCCCHHHHHHCCCCCE----EEEEE Q ss_conf 89999992232545-536732798799986899864448999999728---86666787368874898320----58988 Q gi|254780766|r 6 KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRASYADVTRIGSPSF----FSTFA 77 (375) Q Consensus 6 ~i~~l~i~nFR~~~-~~~i~f~~~~n~i~G~NG~GKT~iLEAI~~l~~---gksfR~~~~~~li~~~~~~~----~~~~~ 77 (375) T Consensus 1 yIk~i~i~gFKSy~~~~~i~f~~gft~IVGpNGSGKSNi~DAI~fVLG~~s~k~lR~~~~~dLI~~g~~~~~~~~A~V~l 80 (1162) T pfam02463 1 YLKRIEIEGFKSYAKTVILPFSPGFTAIVGPNGSGKSNILDAILFVLGERSAKSLRSERLSDLIHYSKSGAFVNSAEVTI 80 (1162) T ss_pred CCCEEEEECCCCCCCCEECCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHCCCCHHHHEECCCCCCCCCEEEEEE T ss_conf 97479970830899996458999917888999987788999999985997542316015888702899999986689999 Q ss_pred EECCCC-----CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC---------HHHCCCCCCHHHHHH Q ss_conf 862853-----200266753002466333211257743332101233345202100---------110012687234121 Q gi|254780766|r 78 RVEGME-----GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS---------MDRIFSGLSMERRRF 143 (375) Q Consensus 78 ~~~~~~-----~~~~~~~~~~~~~~~~~k~~~~n~~~~~~~~~l~~~l~~v~~~p~---------~~~li~~~p~~RR~f 143 (375) T Consensus 81 ~fdn~~~~~~~~~~ev~i~R~i~~~g~-seY~iNg~~~~~-~dv~~ll~~~gi~~~~~~~ivqqg~i~~i~~~~~~~r~~ 158 (1162) T pfam02463 81 TFDNEDKELPIDDPEVSIRRRVYRGGD-SEYYINGKDVTK-KDVAELLESAGISPEAYNFLVQGGKVEIIAMMKPERRLE 158 (1162) T ss_pred EEECCCCCCCCCCCEEEEEEEEEECCC-EEEEECCEECCH-HHHHHHHHHCCCCCCCCEEEECCCHHHHHHCCCHHHHHH T ss_conf 998799876899985999999998896-589889946379-999999997595999883897776858997799989998 Q ss_pred CCCCC Q ss_conf 01000 Q gi|254780766|r 144 LDRMV 148 (375) Q Consensus 144 lD~~i 148 (375) T Consensus 159 l~E~a 163 (1162) T pfam02463 159 IEEEA 163 (1162) T ss_pred HHHHH T ss_conf 89998

HHsearch alignment for GI: 254780766 and conserved domain: pfam02463