HHsearch alignment for GI: 254780766 and conserved domain: pfam04310
>pfam04310 MukB MukB N-terminal. This family represents the N-terminal region of MukB, one of a group of bacterial proteins essential for the movement of nucleoids from mid-cell towards the cell quarters (i.e. chromosome partitioning). The structure of the N-terminal domain consists of an antiparallel six-stranded beta sheet surrounded by one helix on one side and by five helices on the other side. It contains an exposed Walker A loop in an unexpected helix-loop-helix motif (in other proteins, Walker A motifs generally adopt a P loop conformation as part of a strand-loop-helix motif embedded in a conserved topology of alternating helices and (parallel) beta strands).
Probab=97.58 E-value=9.8e-05 Score=50.10 Aligned_cols=51 Identities=24% Similarity=0.337 Sum_probs=46.7
Q ss_pred CCCCEEEEEEEEECCCCHHHEEEECCCCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 988518999999223254553673279879998689986444899999972
Q gi|254780766|r 1 MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51 (375)
Q Consensus 1 ~~~~M~i~~l~i~nFR~~~~~~i~f~~~~n~i~G~NG~GKT~iLEAI~~l~ 51 (375)
T Consensus 1 m~~r~k~rSLtlVNwNGffARTfdLd~lvttLsG~NGAGKsT~m~Af~tal 51 (227)
T pfam04310 1 MIERGKFQSLTLINWNGFFARTFDIDELVTTLSGGNGAGKSTTMAAFITAL 51 (227)
T ss_pred CCCCCCCCEEEEEEECCEEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 965555434789856367767740210268864478765487999999986