HHsearch alignment for GI: 254780767 and conserved domain: COG0859
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].
Probab=99.02 E-value=1.2e-07 Score=70.36 Aligned_cols=317 Identities=13% Similarity=0.051 Sum_probs=157.8
Q ss_pred CCEEEEEECCCCHHHH-HHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHH
Q ss_conf 7459999768214789-999999999738998399997178999478806504445311013674664599999999998
Q gi|254780767|r 3 SLKIAVIAGEISGDLL-AGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTV 81 (383)
Q Consensus 3 ~mki~i~aGE~SGD~~-~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~ 81 (383)
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P-~a~i~~~~~~~~~~i-~~~~p~I~~vi~~---~~~~~~-~~~~~~~~l~ 74 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYP-NAKIDVLVPKGFAPI-LKLNPEIDKVIII---DKKKKG-LGLKERLALL 74 (334)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCC-CCEEEEEECCCHHHH-HHCCCCHHEEEEC---CCCCCC-HHHHHHHHHH
T ss_conf 907999955740137769999999998789-977999955431467-7559524168511---211212-1389999999
Q ss_pred HHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCC
Q ss_conf 61001288868985117765799998663013463111100221100366355799999864015677422320025531
Q gi|254780767|r 82 ELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQRLGGPP 161 (383)
Q Consensus 82 ~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~~ 161 (383)
T Consensus 75 ~~lr~~~yD~vidl~---~~~ksa~l~~~--~~~~~r~--g~---~~~~~r~~~~~~~~~~--~~~~~~~~~~~~~~~-l 141 (334)
T COG0859 75 RTLRKERYDAVIDLQ---GLLKSALLALL--LGIPFRI--GF---DKKSARELLLNKFYPR--LDKPEGQHVVERYLA-L 141 (334)
T ss_pred HHHCCCCCCEEEECH---HHHHHHHHHHH--HCCCCEE--CC---CCHHHHHHHHHHCCCC--CCCCCHHHHHHHHHH-H
T ss_conf 983146867899740---25889999997--3898363--14---5077777777630244--565402459999999-9
Q ss_pred EEECCCCCCC--C--CCCCCCHHHHHHHCCCCCCCCEEEEEEC-CCCCCHHHHCC--CHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 4763882112--2--1001355888976187655650599853-87430123051--11899987640273512620166
Q gi|254780767|r 162 TTFVGHPLSS--S--PSILEVYSQRNKQRNTPSQWKKILLLPG-SRAQEIYKILP--FFESAVASLVKRNPFFRFSLVTV 234 (383)
Q Consensus 162 ~~fVGHPl~d--~--~~~~~~~~~~~~~~~~~~~~~~I~llPG-SR~~EI~~~lP--~~l~~~~~l~~~~~~~~~~i~~~ 234 (383)
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~pg~s~~~--~K~wp~e~~~~l~~~l~~~~--~~Vvl~g~ 216 (334)
T COG0859 142 LEDLGLYPPPEPQLDFPLPRPPIELAKNLAKFD-RPYIVINPGASRGS--AKRWPLEHYAELAELLIAKG--YQVVLFGG 216 (334)
T ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEEECCCCCCC--CCCCCHHHHHHHHHHHHHCC--CEEEEEEC
T ss_conf 876079876677555455547888986542037-98799964734667--78899999999999999769--98999408
Q ss_pred CCHHHHHHHHHHHCCCCCEE--EEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCEEE-----EEECCC
Q ss_conf 33688999999604888505--52055203578876355233115668887627530254057741000-----010246
Q gi|254780767|r 235 SSQENLVRCIVSKWDISPEI--IIDKEQKKQVFMTCNAAMAASGTVILELALCGIPVVSIYKSEWIVNF-----FIFYIK 307 (383)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~Yk~~~lt~~-----i~~lik 307 (383)
T Consensus 217 ~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~l~I~~DSg~~HlAaA~~~P~I~iyg~t~~~~~~p~~~~~~~~~ 296 (334)
T COG0859 217 PDEEERAEEIAKGLPNAVILAGKTSLEELAALIAGADLVIGNDSGPMHLAAALGTPTIALYGPTSPAFTPPPDPKLPGIS 296 (334)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCEEECCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 78999999999736766121799999999999966989991488799999873998899988987555788665443443
Q ss_pred CCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCC
Q ss_conf 761023024407842612420548989999999998449
Q gi|254780767|r 308 TWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQD 346 (383)
Q Consensus 308 ~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d 346 (383)
T Consensus 297 ~~~~~~~~~~~~---~~~~~~~~i~~~~v~~~~~~~~~~ 332 (334)
T COG0859 297 GNLDCSPCKPSG---GHHECLKDIEPEKVLEAAEALLAT 332 (334)
T ss_pred CCCCCCCCCCCC---CCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 555555256678---755564559989999999987641