HHsearch alignment for GI: 254780767 and conserved domain: COG3660
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane].
Probab=97.23 E-value=0.021 Score=35.83 Aligned_cols=256 Identities=16% Similarity=0.160 Sum_probs=133.7
Q ss_pred CEEEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEE-HHHHHHHHHHHHHHHHHHH
Q ss_conf 45999976821478999-999999973899839999717899947880650444531101-3674664599999999998
Q gi|254780767|r 4 LKIAVIAGEISGDLLAG-DLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIG-IMQVVRHLPQFIFRINQTV 81 (383)
Q Consensus 4 mki~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G-~~evl~~~~~~~~~~~~~~ 81 (383)
T Consensus 1 ~ki~aisD~RtGnt~QaiaLa~~l~r-~eyttk~l~~----------------~~l~~lP~~wl~~yp~~~~~~l~~~~~ 63 (329)
T COG3660 1 MKIWAISDGRTGNTHQAIALAEQLTR-SEYTTKLLEY----------------NNLAKLPNFWLAYYPIHILRELFGPRL 63 (329)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC-CCEEEEEEEC----------------CCCCCCCHHHHHCCCCHHHHHHHCCCC
T ss_conf 93489615877638999999998604-6437899512----------------200127446651276276787636700
Q ss_pred HHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHH----C
Q ss_conf 6100128886898511776-5799998663013463111100221100366355799999864015677422320----0
Q gi|254780767|r 82 ELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQ----R 156 (383)
Q Consensus 82 ~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~----k 156 (383)
T Consensus 64 ~r~p~~~Pdl~I~a---Grrta~l~~~lkk~~~~~~vVqI~~Prl----p~~------~fDlviv--p-~HD~~~~~s~~ 127 (329)
T COG3660 64 SRKPEQRPDLIITA---GRRTAPLAFYLKKKFGGIKVVQIQDPRL----PYN------HFDLVIV--P-YHDWREELSDQ 127 (329)
T ss_pred CCCCCCCCCEEEEC---CCCHHHHHHHHHHHCCCCEEEEEECCCC----CCC------CCEEEEC--C-CHHHHHHHHCC
T ss_conf 01755798558861---5210078999998618953899507999----853------0217842--6-02466653115
Q ss_pred CCCCCEEECC--CCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEC-CCCCCHHHHCCCHHHHHHHHHHCC--CCCEEEE
Q ss_conf 2553147638--8211221001355888976187655650599853-874301230511189998764027--3512620
Q gi|254780767|r 157 LGGPPTTFVG--HPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPG-SRAQEIYKILPFFESAVASLVKRN--PFFRFSL 231 (383)
Q Consensus 157 ~~~~~~~fVG--HPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPG-SR~~EI~~~lP~~l~~~~~l~~~~--~~~~~~i 231 (383)
T Consensus 128 ~~Ni-lpi~Gs~h~Vt~~~--lAa~~e~~~~~~-p~~rq~vAVlVGg~nk~-f~~~~d~a~q~~~~l~k~l~~~g~~~li 202 (329)
T COG3660 128 GPNI-LPINGSPHNVTSQR--LAALREAFKHLL-PLPRQRVAVLVGGNNKA-FVFQEDKAHQFASLLVKILENQGGSFLI 202 (329)
T ss_pred CCCE-EECCCCCCCCCHHH--HHHHHHHHHHHC-CCCCCEEEEEECCCCCC-CCCCHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 7845-54268877565777--564588878637-78774499996678877-7667789999999999998747851899
Q ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEEC------CCCHHHHHHHHHHHCCCHHHHH--HHHHHCCCEEEECCCCC
Q ss_conf 166336889999996048885055205------5203578876355233115668--88762753025405774
Q gi|254780767|r 232 VTVSSQENLVRCIVSKWDISPEIIIDK------EQKKQVFMTCNAAMAASGTVIL--ELALCGIPVVSIYKSEW 297 (383)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~~~l~~sd~ai~~SGTaTL--E~al~g~P~IV~Yk~~~ 297 (383)
T Consensus 203 sfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSinM~sEAasTgkPv~~~~~~~~ 276 (329)
T COG3660 203 SFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADSINMCSEAASTGKPVFILEPPNF 276 (329)
T ss_pred EEECCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHCCEEEEECCHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 96068917899999713566844573798789881688885213378704301245787604997599806986