HHsearch alignment for GI: 254780767 and conserved domain: COG3660

>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane].
Probab=97.23  E-value=0.021  Score=35.83  Aligned_cols=256  Identities=16%  Similarity=0.160  Sum_probs=133.7

Q ss_pred             CEEEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEE-HHHHHHHHHHHHHHHHHHH
Q ss_conf             45999976821478999-999999973899839999717899947880650444531101-3674664599999999998
Q gi|254780767|r    4 LKIAVIAGEISGDLLAG-DLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIG-IMQVVRHLPQFIFRINQTV   81 (383)
Q Consensus         4 mki~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G-~~evl~~~~~~~~~~~~~~   81 (383)
T Consensus         1 ~ki~aisD~RtGnt~QaiaLa~~l~r-~eyttk~l~~----------------~~l~~lP~~wl~~yp~~~~~~l~~~~~   63 (329)
T COG3660           1 MKIWAISDGRTGNTHQAIALAEQLTR-SEYTTKLLEY----------------NNLAKLPNFWLAYYPIHILRELFGPRL   63 (329)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHC-CCEEEEEEEC----------------CCCCCCCHHHHHCCCCHHHHHHHCCCC
T ss_conf             93489615877638999999998604-6437899512----------------200127446651276276787636700


Q ss_pred             HHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHH----C
Q ss_conf             6100128886898511776-5799998663013463111100221100366355799999864015677422320----0
Q gi|254780767|r   82 ELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQ----R  156 (383)
Q Consensus        82 ~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~----k  156 (383)
T Consensus        64 ~r~p~~~Pdl~I~a---Grrta~l~~~lkk~~~~~~vVqI~~Prl----p~~------~fDlviv--p-~HD~~~~~s~~  127 (329)
T COG3660          64 SRKPEQRPDLIITA---GRRTAPLAFYLKKKFGGIKVVQIQDPRL----PYN------HFDLVIV--P-YHDWREELSDQ  127 (329)
T ss_pred             CCCCCCCCCEEEEC---CCCHHHHHHHHHHHCCCCEEEEEECCCC----CCC------CCEEEEC--C-CHHHHHHHHCC
T ss_conf             01755798558861---5210078999998618953899507999----853------0217842--6-02466653115


Q ss_pred             CCCCCEEECC--CCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEC-CCCCCHHHHCCCHHHHHHHHHHCC--CCCEEEE
Q ss_conf             2553147638--8211221001355888976187655650599853-874301230511189998764027--3512620
Q gi|254780767|r  157 LGGPPTTFVG--HPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPG-SRAQEIYKILPFFESAVASLVKRN--PFFRFSL  231 (383)
Q Consensus       157 ~~~~~~~fVG--HPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPG-SR~~EI~~~lP~~l~~~~~l~~~~--~~~~~~i  231 (383)
T Consensus       128 ~~Ni-lpi~Gs~h~Vt~~~--lAa~~e~~~~~~-p~~rq~vAVlVGg~nk~-f~~~~d~a~q~~~~l~k~l~~~g~~~li  202 (329)
T COG3660         128 GPNI-LPINGSPHNVTSQR--LAALREAFKHLL-PLPRQRVAVLVGGNNKA-FVFQEDKAHQFASLLVKILENQGGSFLI  202 (329)
T ss_pred             CCCE-EECCCCCCCCCHHH--HHHHHHHHHHHC-CCCCCEEEEEECCCCCC-CCCCHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             7845-54268877565777--564588878637-78774499996678877-7667789999999999998747851899


Q ss_pred             CCCCCHHHHHHHHHHHCCCCCEEEEEC------CCCHHHHHHHHHHHCCCHHHHH--HHHHHCCCEEEECCCCC
Q ss_conf             166336889999996048885055205------5203578876355233115668--88762753025405774
Q gi|254780767|r  232 VTVSSQENLVRCIVSKWDISPEIIIDK------EQKKQVFMTCNAAMAASGTVIL--ELALCGIPVVSIYKSEW  297 (383)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~~~l~~sd~ai~~SGTaTL--E~al~g~P~IV~Yk~~~  297 (383)
T Consensus       203 sfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSinM~sEAasTgkPv~~~~~~~~  276 (329)
T COG3660         203 SFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADSINMCSEAASTGKPVFILEPPNF  276 (329)
T ss_pred             EEECCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHCCEEEEECCHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             96068917899999713566844573798789881688885213378704301245787604997599806986