HHsearch alignment for GI: 254780767 and conserved domain: PRK10422
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional.
Probab=98.89 E-value=3.6e-06 Score=60.69 Aligned_cols=312 Identities=13% Similarity=0.172 Sum_probs=151.7
Q ss_pred CCEEEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEEEECCHHHHHC-----CCEEEECHHHCCEEEHHHHHHHHHHHHHH
Q ss_conf 745999976821478999-999999973899839999717899947-----88065044453110136746645999999
Q gi|254780767|r 3 SLKIAVIAGEISGDLLAG-DLIKSLKEMVSYPINLVGVGGPSLQKE-----GLVSLFDFSELSVIGIMQVVRHLPQFIFR 76 (383)
Q Consensus 3 ~mki~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~giGG~~m~~~-----G~~~~~~~~~l~v~G~~evl~~~~~~~~~ 76 (383)
T Consensus 5 ~kkILIir~~~iGD~il~tP~i~~Lk~~~P-~a~I~~l~~~~~~~ll~~~P~id~i~~~~~-k~~~~~~~~~~------- 75 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYP-DAKIDVLLYQDTIPILSENPEINALYGIKN-KKAGASEKIKN------- 75 (352)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHCC-CCEEEEEECCCHHHHHHCCCCCCEEEEECC-CCCCHHHHHHH-------
T ss_conf 977999758860499999999999999889-988999978047999833999627988667-55445677999-------
Q ss_pred HHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCC-CCHHH--
Q ss_conf 999986100128886898511776579999866301346311110022110036635579999986401567-74223--
Q gi|254780767|r 77 INQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILP-FEKEV-- 153 (383)
Q Consensus 77 ~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifp-FE~~~-- 153 (383)
T Consensus 76 ~~~l~~~Lr~~~yD~vi~l~~~~~~~~l~~~~-----~~~~~ig-----~~~~~~~~~~~~~~~~~~~~~~~~h~v~~~l 145 (352)
T PRK10422 76 FFSLIKVLRANKYDLIVNLTDQWMVALLVRLL-----NARVKIS-----QDYHHRQSAFWRKSFTHLVPLQGGHVVESNL 145 (352)
T ss_pred HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH-----CCCEEEC-----CCCCCCHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 99999998554887788667664999999983-----8985865-----6665210145565531468875415999999
Q ss_pred --HHCCCCCCEEECCCCCCCCCCCCCCHHHHHHH-CCCCCCCCEEEEEECCCCCCHHHHCCC--HHHHHHHHHHCCCCCE
Q ss_conf --20025531476388211221001355888976-187655650599853874301230511--1899987640273512
Q gi|254780767|r 154 --MQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQ-RNTPSQWKKILLLPGSRAQEIYKILPF--FESAVASLVKRNPFFR 228 (383)
Q Consensus 154 --f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~-~~~~~~~~~I~llPGSR~~EI~~~lP~--~l~~~~~l~~~~~~~~ 228 (383)
T Consensus 146 ~ll~~l-~~~~~-~~~~~l~~~--~~~~~~~~~~l~~~~~~~~~ivi~pga~~~--~K~Wp~e~~a~l~~~L~~~--g~~ 217 (352)
T PRK10422 146 SVLTPL-GLSSL-VKETTMSYR--PESWKRMRRQLDHLGVTQNYVVIQPTARQI--FKCWDNDKFSAVIDALQAR--GYE 217 (352)
T ss_pred HHHHHC-CCCCC-CCCCCCCCC--HHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCCCCHHHHHHHHHHHHHC--CCE
T ss_conf 998646-99866-755566788--789999998767448889879996789985--6779999999999999847--991
Q ss_pred EEECCCCCHHHH--HHHHHHHCCCCCEEEEEC-----CCCHHHHHHHHHHHCC-CHHHHHHHHHHCCCEEEECCCC----
Q ss_conf 620166336889--999996048885055205-----5203578876355233-1156688876275302540577----
Q gi|254780767|r 229 FSLVTVSSQENL--VRCIVSKWDISPEIIIDK-----EQKKQVFMTCNAAMAA-SGTVILELALCGIPVVSIYKSE---- 296 (383)
Q Consensus 229 ~~i~~~~~~~~~--~~~~~~~~~~~~~i~~~~-----~~~~~~l~~sd~ai~~-SGTaTLE~al~g~P~IV~Yk~~---- 296 (383)
T Consensus 218 vvl~ggp~~~e~~~~~~i~~~~~~~-~v~~l~G~tsL~el~ali~~a~l~I~nDSGpmHl-AaAlg~P~ValFGpT~p~~ 295 (352)
T PRK10422 218 VVLTSGPAKDDLACVNEIAQGCQTP-PVTALAGKTTFPELGALIDHAQLFIGVDSAPAHI-AAAVNTPLICLFGATDHIF 295 (352)
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCC-CCEECCCCCCHHHHHHHHHHCCEEEECCCHHHHH-HHHCCCCEEEEECCCCCCC
T ss_conf 9997289889999999999746798-7042357888999999998178756059818999-9982999899989999200
Q ss_pred --CCEEEEEECCCCCCEEEEHHHCCCC--CCCHHHCCCCCHHHHHHHHHHHHCCH
Q ss_conf --4100001024676102302440784--26124205489899999999984498
Q gi|254780767|r 297 --WIVNFFIFYIKTWTCALPNLIVDYP--LVPEYFNSMIRSEALVRWIERLSQDT 347 (383)
Q Consensus 297 --~lt~~i~~lik~~~i~LpNii~~~~--ivPEliQ~~~~~~~i~~~~~~ll~d~ 347 (383)
T Consensus 296 ~~P~~~~~~~~~~~~~~~~~---~~~~~~~~~~cl-~~I~~~~V~~a~~~lL~~s 346 (352)
T PRK10422 296 WRPWSDNMIQFWAGDYQPMP---TRDELDRNEKYL-SVIPAADVIAAVDKLLPSS 346 (352)
T ss_pred CCCCCCCEEEEECCCCCCCC---CCCCCCCCHHHH-CCCCHHHHHHHHHHHHHCC
T ss_conf 28999986888579877778---765668760545-3399999999999986357