HHsearch alignment for GI: 254780767 and conserved domain: PRK11083
>PRK11083 DNA-binding response regulator CreB; Provisional.
Probab=94.16 E-value=0.5 Score=26.76 Aligned_cols=81 Identities=20% Similarity=0.372 Sum_probs=55.2
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH
Q ss_conf 98745999976821478999999999973899839999717899947880650444531101367466459999999999
Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383)
Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383)
T Consensus 1 M~~~kILiVEDd~~---l~~~l~~~L~~~---g~~v~~~~~~-----------------------------------~~a 39 (229)
T PRK11083 1 MQQPTILLVEDEQA---IADTLVYALQSE---GFTVEWFERG-----------------------------------LPA 39 (229)
T ss_pred CCCCEEEEEECCHH---HHHHHHHHHHHC---CCEEEEECCH-----------------------------------HHH
T ss_conf 99999999969999---999999999988---9999998999-----------------------------------999
Q ss_pred HHHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEEC
Q ss_conf 86100128886898-5117765-799998663013463111100
Q gi|254780767|r 81 VELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYVC 122 (383)
Q Consensus 81 ~~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv~ 122 (383)
T Consensus 40 l~~~~~~~~DlvilDi~LP~~~G~~l~~~iR~~~~~~pII~lta 83 (229)
T PRK11083 40 LDKLRQQPPDLVILDVGLPDISGFELCRQLRAFHPALPVIFLTA 83 (229)
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99997189989997388999876889999997089972999836