HHsearch alignment for GI: 254780767 and conserved domain: cd03789
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.50 E-value=3.7e-05 Score=54.01 Aligned_cols=218 Identities=16% Similarity=0.155 Sum_probs=122.8
Q ss_pred EEEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5999976821478999-999999973899839999717899947880650444531101367466459999999999861
Q gi|254780767|r 5 KIAVIAGEISGDLLAG-DLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVEL 83 (383)
Q Consensus 5 ki~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~ 83 (383)
T Consensus 1 kILii~~~~iGD~i~~~p~i~~lk~~~P-~~~I~~l~~~~~~~l-~~~~p~id~vi---~~~~-~~~~~~~~~~~~~~~~ 74 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYP-DARITVLAPPWFAPL-LELMPEVDRVI---VLPK-KHGKLGLGARRRLARA 74 (279)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCC-CCEEEEEECHHHHHH-HHHCCCCCEEE---EECC-CCCCCCHHHHHHHHHH
T ss_conf 9899947850399999999999999887-998999989368999-96399857999---9535-4333478999999999
Q ss_pred CCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEE
Q ss_conf 00128886898511776579999866301346311110022110036635579999986401567742232002553147
Q gi|254780767|r 84 IVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQRLGGPPTT 163 (383)
Q Consensus 84 i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~~~~ 163 (383)
T Consensus 75 l~~~~~D~~i~~~~---~~~~~~~~~~--~~~~~~~g-------~~~-------------------~~~-~--------- 113 (279)
T cd03789 75 LRRRRYDLAIDLQG---SLRSALLPFL--AGAPRRIG-------FDG-------------------ERR-R--------- 113 (279)
T ss_pred HHHCCCCEEEECCC---CHHHHHHHHH--CCCCEEEE-------CCC-------------------HHH-C---------
T ss_conf 87649989998985---4589999998--49997996-------781-------------------342-0---------
Q ss_pred ECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCC--CHHHHHHHHHHCCCCCEEEECCCCCHHHHH
Q ss_conf 638821122100135588897618765565059985387430123051--118999876402735126201663368899
Q gi|254780767|r 164 FVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILP--FFESAVASLVKRNPFFRFSLVTVSSQENLV 241 (383)
Q Consensus 164 fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP--~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~ 241 (383)
T Consensus 114 ---------------------~~~~~~~~~~i~i~~ga~~~--~K~wp~~~~~~l~~~l~~~--~~~ivl~g~~~e~~~~ 168 (279)
T cd03789 114 ---------------------GLLTDVVKPVVVLPPGASGP--AKRWPAERFAALADRLLAR--GARVVLTGGPAERELA 168 (279)
T ss_pred ---------------------CCCCCCCCCEEEEECCCCCC--CCCCCHHHHHHHHHHHHHC--CCEEEEECCHHHHHHH
T ss_conf ---------------------33114799989995898973--4579899999999999858--9959993486689999
Q ss_pred HHHHHHCCCCCEEEE----ECCCCHHHHHHHHHHHCCC-HHHHHHHHHHCCCEEEECCC
Q ss_conf 999960488850552----0552035788763552331-15668887627530254057
Q gi|254780767|r 242 RCIVSKWDISPEIII----DKEQKKQVFMTCNAAMAAS-GTVILELALCGIPVVSIYKS 295 (383)
Q Consensus 242 ~~~~~~~~~~~~i~~----~~~~~~~~l~~sd~ai~~S-GTaTLE~al~g~P~IV~Yk~ 295 (383)
T Consensus 169 ~~i~~~~~~~~~~~l~g~~sl~el~~li~~a~l~I~~DTg~~H-lAaa~~~p~i~ifG~ 226 (279)
T cd03789 169 EEIAAALGGPRVVNLAGKTSLRELAALLARADLVVTNDSGPMH-LAAALGTPTVALFGP 226 (279)
T ss_pred HHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCEEEECCCHHHH-HHHHCCCCEEEEECC
T ss_conf 9999967999758368999999999999846833756877999-999849998999899