HHsearch alignment for GI: 254780767 and conserved domain: cd03789

>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.50  E-value=3.7e-05  Score=54.01  Aligned_cols=218  Identities=16%  Similarity=0.155  Sum_probs=122.8

Q ss_pred             EEEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5999976821478999-999999973899839999717899947880650444531101367466459999999999861
Q gi|254780767|r    5 KIAVIAGEISGDLLAG-DLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVEL   83 (383)
Q Consensus         5 ki~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~   83 (383)
T Consensus         1 kILii~~~~iGD~i~~~p~i~~lk~~~P-~~~I~~l~~~~~~~l-~~~~p~id~vi---~~~~-~~~~~~~~~~~~~~~~   74 (279)
T cd03789           1 RILVIRLSWIGDVVLATPLLRALKARYP-DARITVLAPPWFAPL-LELMPEVDRVI---VLPK-KHGKLGLGARRRLARA   74 (279)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHCC-CCEEEEEECHHHHHH-HHHCCCCCEEE---EECC-CCCCCCHHHHHHHHHH
T ss_conf             9899947850399999999999999887-998999989368999-96399857999---9535-4333478999999999


Q ss_pred             CCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEE
Q ss_conf             00128886898511776579999866301346311110022110036635579999986401567742232002553147
Q gi|254780767|r   84 IVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQRLGGPPTT  163 (383)
Q Consensus        84 i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~~~~  163 (383)
T Consensus        75 l~~~~~D~~i~~~~---~~~~~~~~~~--~~~~~~~g-------~~~-------------------~~~-~---------  113 (279)
T cd03789          75 LRRRRYDLAIDLQG---SLRSALLPFL--AGAPRRIG-------FDG-------------------ERR-R---------  113 (279)
T ss_pred             HHHCCCCEEEECCC---CHHHHHHHHH--CCCCEEEE-------CCC-------------------HHH-C---------
T ss_conf             87649989998985---4589999998--49997996-------781-------------------342-0---------


Q ss_pred             ECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCC--CHHHHHHHHHHCCCCCEEEECCCCCHHHHH
Q ss_conf             638821122100135588897618765565059985387430123051--118999876402735126201663368899
Q gi|254780767|r  164 FVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILP--FFESAVASLVKRNPFFRFSLVTVSSQENLV  241 (383)
Q Consensus       164 fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP--~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~  241 (383)
T Consensus       114 ---------------------~~~~~~~~~~i~i~~ga~~~--~K~wp~~~~~~l~~~l~~~--~~~ivl~g~~~e~~~~  168 (279)
T cd03789         114 ---------------------GLLTDVVKPVVVLPPGASGP--AKRWPAERFAALADRLLAR--GARVVLTGGPAERELA  168 (279)
T ss_pred             ---------------------CCCCCCCCCEEEEECCCCCC--CCCCCHHHHHHHHHHHHHC--CCEEEEECCHHHHHHH
T ss_conf             ---------------------33114799989995898973--4579899999999999858--9959993486689999


Q ss_pred             HHHHHHCCCCCEEEE----ECCCCHHHHHHHHHHHCCC-HHHHHHHHHHCCCEEEECCC
Q ss_conf             999960488850552----0552035788763552331-15668887627530254057
Q gi|254780767|r  242 RCIVSKWDISPEIII----DKEQKKQVFMTCNAAMAAS-GTVILELALCGIPVVSIYKS  295 (383)
Q Consensus       242 ~~~~~~~~~~~~i~~----~~~~~~~~l~~sd~ai~~S-GTaTLE~al~g~P~IV~Yk~  295 (383)
T Consensus       169 ~~i~~~~~~~~~~~l~g~~sl~el~~li~~a~l~I~~DTg~~H-lAaa~~~p~i~ifG~  226 (279)
T cd03789         169 EEIAAALGGPRVVNLAGKTSLRELAALLARADLVVTNDSGPMH-LAAALGTPTVALFGP  226 (279)
T ss_pred             HHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCEEEECCCHHHH-HHHHCCCCEEEEECC
T ss_conf             9999967999758368999999999999846833756877999-999849998999899