HHsearch alignment for GI: 254780767 and conserved domain: cd03791
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.06 E-value=0.00024 Score=48.59 Aligned_cols=163 Identities=12% Similarity=0.122 Sum_probs=99.2
Q ss_pred HHHHHHHCCCCCCCCE-EEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCC--CHHHHHHHHHHHCCCCCEEE
Q ss_conf 5888976187655650-59985387430123051118999876402735126201663--36889999996048885055
Q gi|254780767|r 179 YSQRNKQRNTPSQWKK-ILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVS--SQENLVRCIVSKWDISPEII 255 (383)
Q Consensus 179 ~~~~~~~~~~~~~~~~-I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~i~ 255 (383)
T Consensus 281 k~~l~~~~gl~~d~~~pl~~~v-gRl~~-qKG~dll~~a~~~~~~~--~~~~vi~G~G~~~~e~~~~~l~~~~~~~~~~~ 356 (476)
T cd03791 281 KAALQEELGLPVDPDAPLFGFV-GRLTE-QKGIDLLLEALPELLEL--GGQLVILGSGDPEYEEALRELAARYPGRVAVL 356 (476)
T ss_pred HHHHHHHHCCCCCCCCCEEEEE-ECCCC-CCCHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9999999598978998689994-23520-24899999999999963--98899994697789999999997689959999
Q ss_pred EECCC--CHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHC
Q ss_conf 20552--035788763552331-----15668887627530254057741000010246761023024407842612420
Q gi|254780767|r 256 IDKEQ--KKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFN 328 (383)
Q Consensus 256 ~~~~~--~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ 328 (383)
T Consensus 357 ~~~~e~l~~~lya~aD~~l~PS~~EP~Gl~qleAm~~GtppIa-~~tGGL~dtV~d~~~~~-----------~~~tGf~f 424 (476)
T cd03791 357 IGYDEALAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIV-RATGGLADTVIDYNEDT-----------GEGTGFVF 424 (476)
T ss_pred EECCHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHCCCCEEE-CCCCCCCCEEECCCCCC-----------CCCCEEEE
T ss_conf 8068788999998499974255457854899999866997598-06999865100366677-----------77745886
Q ss_pred CCCCHHHHHHHHHH---HHCCHHHHHHHHHHH
Q ss_conf 54898999999999---844989999999999
Q gi|254780767|r 329 SMIRSEALVRWIER---LSQDTLQRRAMLHGF 357 (383)
Q Consensus 329 ~~~~~~~i~~~~~~---ll~d~~~r~~~~~~~ 357 (383)
T Consensus 425 ~~~~~~~l~~ai~~al~~~~~~~~~~~l~~~a 456 (476)
T cd03791 425 EGYNADALLAALRRALALYRDPEAWRKLQRNA 456 (476)
T ss_pred CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 79999999999999999857999999999988