Query gi|254780767|ref|YP_003065180.1| lipid-A-disaccharide synthase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 383
No_of_seqs 189 out of 1971
Neff 6.9
Searched_HMMs 39220
Date Sun May 29 18:53:14 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780767.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00025 lpxB lipid-A-disaccha 100.0 0 0 878.3 32.3 376 3-382 1-378 (382)
2 pfam02684 LpxB Lipid-A-disacch 100.0 0 0 852.9 30.2 369 6-377 1-372 (373)
3 COG0763 LpxB Lipid A disacchar 100.0 0 0 815.0 31.1 377 3-382 1-379 (381)
4 PRK01021 lpxB lipid-A-disaccha 100.0 0 0 805.2 29.1 372 5-381 228-605 (607)
5 TIGR00215 lpxB lipid-A-disacch 100.0 0 0 390.7 18.6 375 3-380 6-392 (393)
6 TIGR03492 conserved hypothetic 100.0 0 0 338.8 24.4 339 7-382 2-396 (396)
7 PRK00726 murG N-acetylglucosam 100.0 2.2E-26 5.6E-31 194.1 24.0 340 5-382 3-357 (359)
8 cd03785 GT1_MurG MurG is an N- 99.9 9E-25 2.3E-29 183.4 22.5 333 5-374 1-348 (350)
9 PRK12446 N-acetylglucosaminyl 99.9 1.9E-24 4.9E-29 181.3 23.2 333 5-380 3-351 (352)
10 COG0707 MurG UDP-N-acetylgluco 99.9 5.3E-23 1.4E-27 171.7 23.4 335 4-381 1-354 (357)
11 TIGR01133 murG undecaprenyldip 99.9 1.8E-21 4.7E-26 161.6 21.6 337 1-372 2-363 (368)
12 PRK13609 diacylglycerol glucos 99.9 1.4E-19 3.5E-24 149.3 23.5 338 3-381 4-369 (388)
13 PRK13608 diacylglycerol glucos 99.9 9E-19 2.3E-23 143.8 25.5 334 3-383 5-370 (391)
14 COG4370 Uncharacterized protei 99.7 2.4E-16 6.2E-21 127.8 15.4 345 3-380 6-409 (412)
15 cd03817 GT1_UGDG_like This fam 99.7 1.6E-14 4.2E-19 115.7 22.5 329 5-367 1-364 (374)
16 cd03799 GT1_amsK_like This is 99.7 7E-14 1.8E-18 111.5 23.0 321 5-365 1-347 (355)
17 cd04962 GT1_like_5 This family 99.7 6.9E-14 1.8E-18 111.6 22.8 333 4-367 1-358 (371)
18 cd03801 GT1_YqgM_like This fam 99.7 1.5E-13 3.7E-18 109.4 24.2 329 5-366 1-362 (374)
19 cd03821 GT1_Bme6_like This fam 99.7 5.1E-13 1.3E-17 105.9 25.1 332 5-365 1-365 (375)
20 cd03812 GT1_CapH_like This fam 99.6 4.6E-12 1.2E-16 99.6 28.2 300 15-354 14-338 (358)
21 cd03811 GT1_WabH_like This fam 99.6 5.1E-13 1.3E-17 105.9 22.8 317 5-358 1-344 (353)
22 cd03820 GT1_amsD_like This fam 99.6 1E-13 2.6E-18 110.5 19.1 318 5-365 1-338 (348)
23 cd03808 GT1_cap1E_like This fa 99.6 4.2E-12 1.1E-16 99.8 26.9 320 5-365 1-349 (359)
24 cd04951 GT1_WbdM_like This fam 99.6 6.5E-12 1.7E-16 98.6 26.2 322 15-377 14-354 (360)
25 TIGR03088 stp2 sugar transfera 99.6 1.9E-12 4.9E-17 102.0 23.2 313 16-366 17-359 (374)
26 cd03807 GT1_WbnK_like This fam 99.6 3.1E-12 8E-17 100.7 24.1 323 5-365 1-352 (365)
27 cd03796 GT1_PIG-A_like This fa 99.6 1.4E-12 3.6E-17 103.0 21.4 313 16-367 17-355 (398)
28 cd03819 GT1_WavL_like This fam 99.6 6.2E-12 1.6E-16 98.7 23.1 305 16-360 13-345 (355)
29 cd03800 GT1_Sucrose_synthase T 99.6 1.6E-11 4.2E-16 95.9 25.2 319 16-365 24-388 (398)
30 cd03814 GT1_like_2 This family 99.6 4.5E-13 1.1E-17 106.3 17.2 322 5-366 1-352 (364)
31 cd03798 GT1_wlbH_like This fam 99.6 2E-12 5.2E-17 101.9 20.4 324 16-365 17-362 (377)
32 cd03794 GT1_wbuB_like This fam 99.6 6.7E-12 1.7E-16 98.5 21.4 333 5-365 1-385 (394)
33 cd03823 GT1_ExpE7_like This fa 99.5 5E-12 1.3E-16 99.3 19.5 325 5-377 1-353 (359)
34 cd03822 GT1_ecORF704_like This 99.5 1.3E-11 3.3E-16 96.6 21.3 323 16-381 16-364 (366)
35 TIGR03449 mycothiol_MshA UDP-N 99.5 7.9E-11 2E-15 91.4 23.7 332 11-370 17-392 (405)
36 PRK10307 predicted glycosyl tr 99.5 1.3E-09 3.4E-14 83.3 27.7 340 4-367 1-401 (415)
37 cd03809 GT1_mtfB_like This fam 99.5 1.8E-11 4.5E-16 95.7 17.9 316 13-365 14-355 (365)
38 cd03805 GT1_ALG2_like This fam 99.5 1.9E-10 4.8E-15 88.9 23.0 330 4-366 1-385 (392)
39 cd03795 GT1_like_4 This family 99.5 1.6E-11 4.1E-16 96.0 17.4 324 5-364 1-351 (357)
40 PRK05749 3-deoxy-D-manno-octul 99.5 4.5E-11 1.1E-15 93.1 19.3 328 6-382 52-419 (423)
41 TIGR03590 PseG pseudaminic aci 99.5 4.1E-12 1E-16 99.9 14.0 252 4-294 1-269 (280)
42 TIGR03568 NeuC_NnaA UDP-N-acet 99.5 9.3E-11 2.4E-15 91.0 20.7 308 4-351 1-343 (365)
43 cd03825 GT1_wcfI_like This fam 99.4 7.1E-11 1.8E-15 91.7 19.1 323 4-377 1-358 (365)
44 cd03784 GT1_Gtf_like This fami 99.4 1.7E-09 4.3E-14 82.7 24.0 335 4-381 1-401 (401)
45 COG0381 WecB UDP-N-acetylgluco 99.4 8.9E-10 2.3E-14 84.5 21.5 337 1-382 1-372 (383)
46 cd05844 GT1_like_7 Glycosyltra 99.4 2.5E-10 6.4E-15 88.1 17.5 260 77-376 71-363 (367)
47 pfam04007 DUF354 Protein of un 99.3 9.8E-11 2.5E-15 90.8 15.0 300 4-345 1-309 (335)
48 cd04955 GT1_like_6 This family 99.3 1.1E-09 2.8E-14 83.9 19.8 313 15-367 17-352 (363)
49 PRK09922 UDP-D-galactose:(gluc 99.3 1.1E-09 2.8E-14 83.8 18.2 308 2-352 1-332 (361)
50 pfam04101 Glyco_tran_28_C Glyc 99.3 4.2E-11 1.1E-15 93.2 10.8 158 194-370 1-164 (167)
51 COG1817 Uncharacterized protei 99.2 8.4E-09 2.1E-13 78.0 17.4 305 4-348 1-316 (346)
52 cd03786 GT1_UDP-GlcNAc_2-Epime 99.1 2.3E-08 5.8E-13 75.2 17.6 339 5-378 1-362 (363)
53 cd03792 GT1_Trehalose_phosphor 99.1 5.1E-08 1.3E-12 72.9 19.0 320 10-367 8-359 (372)
54 cd03818 GT1_ExpC_like This fam 99.1 1.8E-07 4.5E-12 69.3 21.0 315 21-365 15-385 (396)
55 COG0859 RfaF ADP-heptose:LPS h 99.0 1.2E-07 3.1E-12 70.4 18.1 317 3-346 1-332 (334)
56 COG3980 spsG Spore coat polysa 99.0 1.3E-07 3.3E-12 70.2 17.1 291 4-356 1-303 (318)
57 pfam00534 Glycos_transf_1 Glyc 98.9 6.3E-08 1.6E-12 72.3 13.9 160 178-358 1-170 (172)
58 PRK00654 glgA glycogen synthas 98.9 4.8E-06 1.2E-10 59.9 23.0 187 179-383 278-476 (476)
59 cd03802 GT1_AviGT4_like This f 98.9 1.2E-06 3.1E-11 63.8 19.9 287 4-347 1-309 (335)
60 PRK10422 lipopolysaccharide co 98.9 3.6E-06 9.1E-11 60.7 21.4 312 3-347 5-346 (352)
61 TIGR03087 stp1 sugar transfera 98.9 8E-07 2E-11 65.0 17.7 319 14-367 14-384 (397)
62 pfam02350 Epimerase_2 UDP-N-ac 98.8 1.5E-07 3.8E-12 69.8 13.0 276 74-378 53-345 (346)
63 cd03804 GT1_wbaZ_like This fam 98.8 2.1E-07 5.5E-12 68.8 13.3 284 19-353 15-333 (351)
64 COG1519 KdtA 3-deoxy-D-manno-o 98.8 4.9E-06 1.2E-10 59.8 19.8 320 18-381 64-418 (419)
65 cd04949 GT1_gtfA_like This fam 98.8 9.9E-08 2.5E-12 71.0 10.8 148 198-366 208-365 (372)
66 PRK10916 ADP-heptose:LPS hepto 98.8 9E-07 2.3E-11 64.7 15.7 314 4-346 1-345 (348)
67 cd04946 GT1_AmsK_like This fam 98.8 5.4E-06 1.4E-10 59.5 19.3 225 104-363 142-394 (407)
68 COG1819 Glycosyl transferases, 98.8 5.3E-06 1.4E-10 59.6 19.0 345 3-382 1-399 (406)
69 PRK10964 ADP-heptose:LPS hepto 98.6 7.4E-06 1.9E-10 58.6 16.6 306 4-345 1-321 (322)
70 TIGR01426 MGT glycosyltransfer 98.6 1.3E-06 3.3E-11 63.6 12.1 328 15-382 7-427 (429)
71 COG4671 Predicted glycosyl tra 98.6 1.4E-06 3.7E-11 63.3 12.1 322 3-348 9-367 (400)
72 cd03813 GT1_like_3 This family 98.6 5.1E-06 1.3E-10 59.7 13.9 153 193-362 294-458 (475)
73 TIGR02149 glgA_Coryne glycogen 98.5 2.6E-06 6.7E-11 61.6 11.4 332 17-380 20-414 (416)
74 cd03789 GT1_LPS_heptosyltransf 98.5 3.7E-05 9.4E-10 54.0 16.8 218 5-295 1-226 (279)
75 PRK10125 predicted glycosyl tr 98.4 0.00023 5.9E-09 48.8 18.3 183 160-378 212-399 (405)
76 cd01635 Glycosyltransferase_GT 98.3 6.1E-05 1.6E-09 52.6 14.8 90 208-298 117-216 (229)
77 cd03791 GT1_Glycogen_synthase_ 98.1 0.00024 6.2E-09 48.6 13.0 163 179-357 281-456 (476)
78 cd03806 GT1_ALG11_like This fa 98.0 0.0015 3.7E-08 43.4 17.0 255 77-365 96-412 (419)
79 pfam01075 Glyco_transf_9 Glyco 97.7 0.00051 1.3E-08 46.5 9.8 103 189-296 104-214 (249)
80 pfam00201 UDPGT UDP-glucoronos 97.7 0.0052 1.3E-07 39.8 18.3 105 259-378 331-438 (501)
81 pfam04464 Glyphos_transf CDP-G 97.6 0.0016 4E-08 43.3 10.9 179 183-380 2-186 (186)
82 pfam03033 Glyco_transf_28 Glyc 97.4 0.00089 2.3E-08 44.9 7.6 106 6-119 1-114 (136)
83 pfam06258 DUF1022 Protein of u 97.3 0.0071 1.8E-07 38.9 11.1 224 53-297 18-256 (308)
84 COG3660 Predicted nucleoside-d 97.2 0.021 5.3E-07 35.8 15.7 256 4-297 1-276 (329)
85 TIGR02095 glgA glycogen/starch 96.9 0.041 1E-06 33.9 13.1 304 33-354 87-493 (517)
86 KOG1111 consensus 96.8 0.0063 1.6E-07 39.3 6.9 106 190-297 191-305 (426)
87 COG1887 TagB Putative glycosyl 96.7 0.04 1E-06 34.0 10.8 224 140-379 149-385 (388)
88 TIGR02195 heptsyl_trn_II lipop 96.5 0.017 4.4E-07 36.3 7.7 313 5-344 1-360 (361)
89 cd03816 GT1_ALG1_like This fam 96.3 0.046 1.2E-06 33.6 8.8 126 209-357 246-395 (415)
90 TIGR03609 S_layer_CsaB polysac 95.9 0.17 4.2E-06 29.9 14.3 195 88-292 64-275 (298)
91 TIGR00236 wecB UDP-N-acetylglu 95.7 0.19 4.8E-06 29.5 16.3 347 4-378 1-376 (380)
92 KOG0853 consensus 95.4 0.25 6.3E-06 28.7 11.5 154 210-380 288-467 (495)
93 cd04950 GT1_like_1 Glycosyltra 95.3 0.1 2.6E-06 31.2 7.3 184 89-292 102-307 (373)
94 COG2327 WcaK Polysaccharide py 94.5 0.42 1.1E-05 27.3 13.5 269 4-293 1-311 (385)
95 PRK10017 putative pyruvyl tran 94.4 0.45 1.1E-05 27.0 20.4 324 4-353 1-399 (426)
96 PRK11083 DNA-binding response 94.2 0.5 1.3E-05 26.8 8.5 81 1-122 1-83 (229)
97 PHA01630 putative group 1 glyc 94.0 0.52 1.3E-05 26.6 8.4 147 138-302 95-251 (333)
98 PHA01633 putative glycosyl tra 93.7 0.36 9.2E-06 27.7 7.0 148 190-352 146-315 (335)
99 COG1165 MenD 2-succinyl-6-hydr 93.0 0.49 1.3E-05 26.8 6.7 15 34-48 109-124 (566)
100 COG0438 RfaG Glycosyltransfera 92.1 0.99 2.5E-05 24.8 10.8 151 194-364 200-361 (381)
101 pfam05159 Capsule_synth Capsul 92.0 0.27 7E-06 28.5 4.4 98 195-292 119-224 (268)
102 COG0297 GlgA Glycogen synthase 91.7 1.1 2.9E-05 24.4 9.5 153 177-343 277-439 (487)
103 PRK11337 DNA-binding transcrip 90.4 0.68 1.7E-05 25.9 5.1 44 50-94 3-47 (293)
104 pfam08660 Alg14 Oligosaccharid 89.8 1.6 4.2E-05 23.3 8.1 146 7-167 2-165 (166)
105 PRK10840 transcriptional regul 89.7 1.7 4.3E-05 23.3 7.7 81 1-120 1-86 (216)
106 PRK13114 consensus 89.5 1.7 4.4E-05 23.2 7.7 122 6-141 17-167 (266)
107 PRK13134 consensus 87.7 1.6 4E-05 23.5 5.4 122 6-141 23-172 (257)
108 TIGR02193 heptsyl_trn_I lipopo 87.7 2.3 5.8E-05 22.4 16.0 270 5-296 1-313 (359)
109 PRK10046 dpiA two-component re 87.6 2.3 5.8E-05 22.4 7.8 80 2-120 3-84 (225)
110 PRK11302 DNA-binding transcrip 87.5 1.1 2.7E-05 24.5 4.5 30 63-92 3-33 (284)
111 pfam04413 Glycos_transf_N 3-De 86.8 2.5 6.5E-05 22.1 7.5 146 6-171 24-183 (186)
112 COG4641 Uncharacterized protei 86.4 2.6 6.8E-05 22.0 11.3 284 21-363 22-345 (373)
113 PRK13112 consensus 85.9 1.8 4.7E-05 23.0 4.9 121 6-140 22-171 (279)
114 TIGR02472 sucr_P_syn_N sucrose 85.5 2.3 5.8E-05 22.4 5.3 251 71-353 95-419 (445)
115 PRK13122 consensus 85.5 1.8 4.6E-05 23.0 4.7 124 1-141 1-152 (242)
116 PRK09987 dTDP-4-dehydrorhamnos 85.4 3 7.6E-05 21.6 7.5 90 4-126 1-108 (299)
117 cd01425 RPS2 Ribosomal protein 85.3 3 7.7E-05 21.6 5.9 20 277-296 141-160 (193)
118 PRK04607 consensus 85.3 3 7.7E-05 21.6 6.5 90 1-94 2-119 (330)
119 pfam00290 Trp_syntA Tryptophan 85.1 1.8 4.6E-05 23.1 4.6 122 6-141 13-163 (258)
120 PRK13132 consensus 84.3 1.9 4.8E-05 22.9 4.4 123 6-141 15-161 (246)
121 pfam00072 Response_reg Respons 84.1 1.1 2.8E-05 24.4 3.1 42 79-120 33-76 (111)
122 PRK13140 consensus 84.0 2.9 7.3E-05 21.7 5.2 124 6-141 18-168 (257)
123 PRK13120 consensus 83.7 3.3 8.4E-05 21.3 5.4 122 6-141 25-175 (285)
124 PRK13113 consensus 83.6 3.4 8.8E-05 21.2 5.5 121 6-140 21-170 (263)
125 PRK13124 consensus 83.5 3.3 8.3E-05 21.4 5.3 121 6-141 13-161 (257)
126 cd04724 Tryptophan_synthase_al 83.2 2.1 5.3E-05 22.6 4.3 121 6-140 4-152 (242)
127 PRK13118 consensus 82.9 2.9 7.3E-05 21.7 4.8 58 77-139 111-169 (269)
128 CHL00200 trpA tryptophan synth 82.2 2.8 7E-05 21.8 4.6 124 6-141 19-168 (263)
129 PRK13121 consensus 82.2 3.4 8.6E-05 21.3 5.0 124 6-141 21-171 (265)
130 pfam00318 Ribosomal_S2 Ribosom 82.0 3.1 7.9E-05 21.5 4.8 19 278-296 152-170 (205)
131 PRK13111 trpA tryptophan synth 82.0 2.6 6.6E-05 22.0 4.3 122 6-141 13-162 (256)
132 PRK03367 consensus 81.7 4.2 0.00011 20.7 7.4 105 1-108 2-144 (329)
133 cd00156 REC Signal receiver do 81.6 1.6 4E-05 23.4 3.1 41 80-120 33-75 (113)
134 PRK11557 putative DNA-binding 81.3 3.6 9.1E-05 21.1 4.9 27 66-92 7-33 (282)
135 PRK06180 short chain dehydroge 81.3 4.3 0.00011 20.5 6.6 35 1-40 1-35 (277)
136 PRK13127 consensus 81.2 3.5 9E-05 21.1 4.8 120 6-139 15-162 (262)
137 PRK13123 consensus 81.2 2.7 6.9E-05 21.9 4.2 124 6-141 19-166 (256)
138 PRK13138 consensus 81.2 2.5 6.3E-05 22.1 4.0 121 6-140 17-168 (264)
139 PRK02304 adenine phosphoribosy 80.8 3.5 8.8E-05 21.2 4.7 54 64-120 26-79 (174)
140 PRK13135 consensus 80.8 4.4 0.00011 20.5 5.2 122 6-141 21-170 (267)
141 PRK13119 consensus 80.8 4.5 0.00011 20.4 5.5 122 6-139 19-167 (261)
142 PRK09390 fixJ response regulat 80.8 1.9 4.8E-05 23.0 3.3 35 85-119 44-80 (202)
143 PRK06555 pyrophosphate--fructo 80.2 4.7 0.00012 20.3 9.5 118 1-119 1-146 (403)
144 TIGR01182 eda 2-dehydro-3-deox 80.0 1.4 3.6E-05 23.7 2.4 26 200-225 33-58 (205)
145 cd07020 Clp_protease_NfeD_1 No 79.9 4.8 0.00012 20.2 5.2 60 73-132 14-77 (187)
146 cd03793 GT1_Glycogen_synthase_ 79.9 3.2 8.1E-05 21.4 4.2 101 260-367 467-574 (590)
147 PRK09739 hypothetical protein; 79.8 4.8 0.00012 20.2 7.1 37 1-38 1-41 (201)
148 TIGR02015 BchY chlorophyllide 79.8 0.98 2.5E-05 24.8 1.6 225 84-356 163-421 (426)
149 pfam00551 Formyl_trans_N Formy 79.0 2.9 7.3E-05 21.7 3.7 95 4-108 1-96 (181)
150 PRK07454 short chain dehydroge 78.9 5.2 0.00013 20.0 5.8 35 1-40 3-37 (241)
151 cd01143 YvrC Periplasmic bindi 78.4 1.9 4.8E-05 22.9 2.7 60 80-150 52-111 (195)
152 PRK13125 trpA tryptophan synth 77.7 5.6 0.00014 19.8 5.7 119 6-140 9-155 (247)
153 cd05013 SIS_RpiR RpiR-like pro 77.7 5.6 0.00014 19.8 5.4 108 21-151 5-116 (139)
154 PRK09468 ompR osmolarity respo 77.5 2.5 6.4E-05 22.1 3.1 42 81-122 42-85 (239)
155 PRK09958 DNA-binding transcrip 77.5 2.5 6.3E-05 22.1 3.0 46 330-382 158-203 (204)
156 COG1030 NfeD Membrane-bound se 77.0 5.8 0.00015 19.7 5.1 63 72-136 40-108 (436)
157 PRK13137 consensus 76.9 5.9 0.00015 19.7 5.1 123 6-141 29-177 (266)
158 PRK13129 consensus 76.5 6 0.00015 19.6 7.3 120 6-139 23-170 (267)
159 PRK09836 DNA-binding transcrip 76.4 2.4 6.1E-05 22.2 2.8 77 4-121 1-79 (226)
160 PRK10693 response regulator of 76.1 3 7.6E-05 21.6 3.2 42 79-120 42-85 (337)
161 COG4753 Response regulator con 76.0 3 7.7E-05 21.6 3.1 72 37-118 5-80 (475)
162 PRK02947 hypothetical protein; 75.8 6.3 0.00016 19.5 5.5 193 19-248 30-239 (247)
163 PRK10643 DNA-binding transcrip 75.5 3.5 8.9E-05 21.2 3.4 78 4-122 1-80 (222)
164 KOG1465 consensus 75.0 6.6 0.00017 19.4 6.5 97 195-299 165-280 (353)
165 PRK09935 transcriptional regul 75.0 3 7.6E-05 21.6 2.9 22 215-236 66-87 (210)
166 PRK10124 putative UDP-glucose 74.8 4.6 0.00012 20.3 3.9 26 18-43 155-180 (464)
167 pfam07355 GRDB Glycine/sarcosi 73.7 4.4 0.00011 20.5 3.5 70 74-146 66-154 (349)
168 PRK10499 N,N'-diacetylchitobio 73.7 7.1 0.00018 19.1 9.1 83 1-100 1-84 (106)
169 cd07015 Clp_protease_NfeD Nodu 73.6 7.1 0.00018 19.1 5.1 56 74-131 15-76 (172)
170 PRK13117 consensus 72.8 6.6 0.00017 19.3 4.3 58 77-139 111-169 (268)
171 PRK13139 consensus 72.4 7.6 0.00019 18.9 4.8 57 78-139 110-167 (254)
172 pfam06925 MGDG_synth Monogalac 72.3 7.6 0.00019 18.9 5.3 83 76-192 77-161 (169)
173 PRK10923 glnG nitrogen regulat 72.3 4.8 0.00012 20.2 3.4 36 84-119 43-80 (469)
174 PRK13115 consensus 72.1 7.6 0.00019 18.9 4.4 124 6-141 28-176 (269)
175 PRK09483 response regulator; P 71.8 4.2 0.00011 20.7 3.0 20 215-234 64-83 (216)
176 cd01139 TroA_f Periplasmic bin 71.7 7.9 0.0002 18.8 4.6 90 18-120 26-124 (342)
177 PRK10403 transcriptional regul 71.6 3.2 8.2E-05 21.4 2.4 31 331-367 169-199 (215)
178 cd01147 HemV-2 Metal binding p 71.2 4.6 0.00012 20.4 3.2 42 81-124 67-108 (262)
179 PRK10336 DNA-binding transcrip 70.7 2.8 7E-05 21.8 1.9 39 82-120 38-78 (219)
180 pfam02601 Exonuc_VII_L Exonucl 70.3 8.4 0.00021 18.6 8.3 92 3-120 14-113 (295)
181 PRK01909 pdxA 4-hydroxythreoni 69.8 8.6 0.00022 18.6 7.7 90 2-94 4-113 (329)
182 pfam05693 Glycogen_syn Glycoge 69.7 7.8 0.0002 18.9 4.0 98 260-367 462-569 (633)
183 PRK10161 transcriptional regul 69.6 5.9 0.00015 19.7 3.4 80 1-122 1-84 (229)
184 PRK00742 chemotaxis-specific m 69.5 5 0.00013 20.1 3.0 76 4-119 3-80 (345)
185 cd00529 RuvC_resolvase Hollida 69.4 8.8 0.00022 18.5 6.1 80 67-146 38-131 (154)
186 pfam04392 ABC_sub_bind ABC tra 69.3 8.8 0.00022 18.5 4.4 166 77-293 48-217 (292)
187 PRK10651 transcriptional regul 69.2 2.1 5.3E-05 22.7 1.0 34 329-368 169-202 (216)
188 TIGR01818 ntrC nitrogen regula 68.8 7.7 0.0002 18.9 3.9 146 75-249 29-182 (471)
189 COG0039 Mdh Malate/lactate deh 68.8 9 0.00023 18.4 4.6 61 268-334 226-288 (313)
190 cd06334 PBP1_ABC_ligand_bindin 68.6 9.1 0.00023 18.4 4.2 156 79-255 58-225 (351)
191 PRK12555 chemotaxis-specific m 68.6 5.3 0.00014 19.9 3.0 78 3-120 1-80 (340)
192 PRK10816 DNA-binding transcrip 68.4 3.2 8.1E-05 21.4 1.8 44 79-122 35-80 (223)
193 cd05005 SIS_PHI Hexulose-6-pho 67.9 6.4 0.00016 19.4 3.3 49 88-146 75-126 (179)
194 PRK13116 consensus 67.8 9.4 0.00024 18.3 4.1 17 102-118 82-98 (278)
195 PRK13133 consensus 67.4 9.1 0.00023 18.4 4.0 124 6-141 19-173 (267)
196 pfam10906 DUF2697 Protein of u 67.3 3.7 9.6E-05 21.0 2.0 45 94-139 8-56 (68)
197 PRK13435 response regulator; P 67.2 6.7 0.00017 19.3 3.3 77 3-120 1-80 (141)
198 PRK10365 transcriptional regul 66.8 6.5 0.00017 19.4 3.2 13 2-14 4-16 (441)
199 PRK09423 gldA glycerol dehydro 66.7 9.9 0.00025 18.2 7.6 89 5-127 31-119 (366)
200 pfam04230 PS_pyruv_trans Polys 66.6 10 0.00025 18.2 10.4 35 259-293 221-255 (258)
201 PRK11173 two-component respons 66.3 6.3 0.00016 19.5 3.0 79 1-121 1-81 (237)
202 cd07021 Clp_protease_NfeD_like 66.2 10 0.00026 18.1 4.8 48 75-124 16-68 (178)
203 PRK05299 rpsB 30S ribosomal pr 66.1 10 0.00026 18.1 4.4 20 277-296 171-190 (255)
204 PRK03379 vitamin B12-transport 66.1 10 0.00026 18.1 4.7 71 66-147 55-125 (265)
205 PRK13131 consensus 65.7 10 0.00026 18.0 6.3 56 78-138 105-161 (257)
206 pfam00056 Ldh_1_N lactate/mala 65.4 9 0.00023 18.4 3.7 36 200-235 85-120 (142)
207 pfam07454 SpoIIP Stage II spor 65.2 11 0.00027 18.0 4.5 37 195-231 179-215 (258)
208 cd01140 FatB Siderophore bindi 65.1 5.3 0.00013 20.0 2.4 37 81-123 65-101 (270)
209 KOG2941 consensus 65.0 11 0.00027 18.0 8.6 132 207-360 267-423 (444)
210 PRK11361 acetoacetate metaboli 64.8 7.5 0.00019 19.0 3.1 18 19-37 63-80 (457)
211 cd01980 Chlide_reductase_Y Chl 64.7 2.2 5.6E-05 22.5 0.4 155 82-252 85-255 (416)
212 PRK10481 hypothetical protein; 64.6 8.1 0.00021 18.7 3.3 30 71-100 72-101 (224)
213 pfam07302 AroM AroM protein. T 64.2 8.2 0.00021 18.7 3.3 31 71-101 70-100 (221)
214 pfam01408 GFO_IDH_MocA Oxidore 63.9 11 0.00029 17.8 5.2 90 4-118 1-90 (120)
215 cd02068 radical_SAM_B12_BD B12 63.8 9.7 0.00025 18.2 3.6 35 85-119 36-73 (127)
216 TIGR00661 MJ1255 conserved hyp 63.3 11 0.00029 17.7 13.1 271 6-296 3-308 (353)
217 KOG1387 consensus 63.2 11 0.00029 17.7 3.9 255 77-367 139-446 (465)
218 PRK09534 btuF corrinoid ABC tr 62.6 7.7 0.0002 18.9 2.9 61 80-151 111-171 (364)
219 TIGR00993 3a0901s04IAP86 chlor 62.2 3.8 9.8E-05 20.9 1.3 66 71-150 190-259 (772)
220 PRK10610 chemotaxis regulatory 62.0 8.8 0.00022 18.5 3.1 35 85-119 47-85 (129)
221 PRK03877 consensus 61.9 12 0.00031 17.6 8.1 120 1-127 1-161 (328)
222 cd06346 PBP1_ABC_ligand_bindin 61.7 12 0.00031 17.6 4.2 44 75-119 54-97 (312)
223 PRK13358 protocatechuate 4,5-d 61.7 10 0.00027 18.0 3.4 32 71-102 25-56 (269)
224 PRK03946 pdxA 4-hydroxythreoni 61.3 12 0.00032 17.5 7.6 117 2-126 1-141 (304)
225 cd01339 LDH-like_MDH L-lactate 61.3 12 0.00032 17.5 4.6 33 201-233 83-115 (300)
226 cd01141 TroA_d Periplasmic bin 61.2 9.2 0.00023 18.4 3.1 37 81-120 62-98 (186)
227 PRK09581 pleD response regulat 61.1 10 0.00026 18.1 3.3 39 82-120 40-82 (457)
228 KOG0680 consensus 60.6 12 0.00031 17.6 3.6 55 289-343 241-309 (400)
229 PRK06223 malate dehydrogenase; 60.0 13 0.00033 17.4 4.1 60 269-334 227-288 (312)
230 cd06325 PBP1_ABC_uncharacteriz 59.9 13 0.00034 17.4 4.3 166 78-293 50-218 (281)
231 PRK05654 acetyl-CoA carboxylas 59.7 3.9 1E-04 20.8 1.0 81 281-365 192-284 (288)
232 TIGR02918 TIGR02918 conserved 58.4 11 0.00027 18.0 3.0 145 190-348 325-480 (511)
233 PRK10710 DNA-binding transcrip 58.2 5.7 0.00015 19.7 1.6 39 81-120 47-87 (240)
234 PRK00994 F420-dependent methyl 57.8 11 0.00029 17.8 3.1 61 5-95 4-66 (276)
235 pfam01761 DHQ_synthase 3-dehyd 57.8 14 0.00036 17.1 10.0 87 4-120 20-112 (310)
236 PRK10430 DNA-binding transcrip 57.1 13 0.00034 17.3 3.3 78 4-120 2-83 (239)
237 PRK10766 DNA-binding transcrip 56.8 9.3 0.00024 18.4 2.5 79 1-122 1-81 (224)
238 cd01148 TroA_a Metal binding p 56.6 15 0.00038 17.0 4.2 67 81-149 72-141 (284)
239 PRK05920 aromatic acid decarbo 56.4 15 0.00038 17.0 11.8 37 1-40 1-38 (205)
240 pfam04396 consensus 56.2 15 0.00039 17.0 4.2 113 13-130 18-148 (149)
241 TIGR01771 L-LDH-NAD L-lactate 56.1 15 0.00038 17.0 3.5 59 201-260 82-140 (302)
242 cd06333 PBP1_ABC-type_HAAT_lik 55.5 16 0.0004 16.9 4.0 43 76-120 54-96 (312)
243 cd07368 PhnC_Bs_like PhnC is a 55.5 13 0.00033 17.4 3.0 31 71-101 29-59 (277)
244 PRK01966 ddl D-alanyl-alanine 55.4 16 0.0004 16.9 5.1 39 1-40 1-44 (344)
245 TIGR01973 NuoG NADH-quinone ox 55.3 16 0.0004 16.9 3.8 46 79-128 390-441 (715)
246 KOG4626 consensus 55.2 16 0.0004 16.8 5.8 160 183-361 750-919 (966)
247 TIGR01212 TIGR01212 radical SA 55.1 12 0.00031 17.5 2.9 108 64-224 95-208 (307)
248 PRK13126 consensus 54.9 16 0.0004 16.8 5.5 119 6-140 10-146 (237)
249 pfam02310 B12-binding B12 bind 54.9 16 0.0004 16.8 7.7 42 78-119 41-86 (121)
250 cd02070 corrinoid_protein_B12- 54.8 16 0.00041 16.8 4.1 69 152-235 104-174 (201)
251 TIGR02154 PhoB phosphate regul 54.0 12 0.00031 17.6 2.7 42 77-119 35-81 (226)
252 cd06289 PBP1_MalI_like Ligand- 53.8 16 0.00042 16.7 12.7 43 76-120 43-85 (268)
253 cd00650 LDH_MDH_like NAD-depen 53.8 17 0.00042 16.7 5.5 35 201-235 87-121 (263)
254 pfam01497 Peripla_BP_2 Peripla 53.8 17 0.00042 16.7 4.8 83 19-121 8-90 (236)
255 PRK11475 DNA-binding transcrip 53.0 5 0.00013 20.1 0.6 157 188-381 36-195 (205)
256 TIGR03659 IsdE heme ABC transp 52.9 17 0.00043 16.6 4.7 38 81-122 84-121 (289)
257 CHL00148 orf27 Ycf27; Reviewed 52.9 5.3 0.00013 20.0 0.7 39 83-122 45-85 (240)
258 PRK00066 ldh L-lactate dehydro 52.7 17 0.00044 16.6 4.8 60 269-334 233-294 (315)
259 PRK09554 feoB ferrous iron tra 52.5 17 0.00044 16.6 3.4 104 1-110 1-110 (772)
260 COG1995 PdxA Pyridoxal phospha 52.2 17 0.00045 16.5 7.3 135 1-141 1-175 (332)
261 TIGR03127 RuMP_HxlB 6-phospho 52.2 17 0.00045 16.5 3.4 49 88-146 72-123 (179)
262 PRK11517 transcriptional regul 51.8 18 0.00045 16.5 3.7 76 4-121 1-78 (223)
263 COG3563 KpsC Capsule polysacch 51.8 18 0.00045 16.5 4.0 197 124-330 365-625 (671)
264 cd07367 CarBb CarBb is the B s 51.5 18 0.00046 16.5 3.3 30 71-100 25-54 (268)
265 TIGR01090 apt adenine phosphor 51.3 10 0.00025 18.1 1.9 57 52-108 5-72 (175)
266 COG3947 Response regulator con 51.3 18 0.00046 16.4 3.5 45 78-122 34-80 (361)
267 cd06564 GH20_DspB_LnbB-like Gl 51.2 18 0.00046 16.4 4.1 86 73-159 80-165 (326)
268 cd06337 PBP1_ABC_ligand_bindin 51.0 18 0.00047 16.4 4.0 45 77-123 58-102 (357)
269 COG0614 FepB ABC-type Fe3+-hyd 50.4 19 0.00047 16.4 4.1 39 81-123 108-146 (319)
270 CHL00174 accD acetyl-CoA carbo 50.4 5 0.00013 20.2 0.2 79 283-364 214-303 (305)
271 PRK06924 short chain dehydroge 50.0 19 0.00048 16.3 5.3 33 4-41 1-33 (251)
272 cd06326 PBP1_STKc_like Type I 49.9 19 0.00048 16.3 4.2 153 76-255 56-221 (336)
273 cd06340 PBP1_ABC_ligand_bindin 49.8 19 0.00049 16.3 4.4 42 78-121 60-101 (347)
274 cd01337 MDH_glyoxysomal_mitoch 49.3 10 0.00026 18.1 1.7 16 307-322 260-275 (310)
275 cd00762 NAD_bind_malic_enz NAD 49.0 14 0.00036 17.2 2.4 107 78-223 96-221 (254)
276 PRK13365 protocatechuate 4,5-d 48.8 20 0.0005 16.2 3.2 30 71-100 31-60 (279)
277 COG1737 RpiR Transcriptional r 48.7 15 0.00038 17.0 2.5 32 62-93 4-36 (281)
278 cd01144 BtuF Cobalamin binding 48.5 20 0.00051 16.2 4.7 73 67-151 36-109 (245)
279 TIGR01902 dapE-lys-deAc N-acet 48.3 9.5 0.00024 18.3 1.4 20 12-31 11-31 (352)
280 PRK10701 DNA-binding transcrip 48.2 6 0.00015 19.6 0.4 40 82-122 39-80 (240)
281 PRK13856 two-component respons 48.2 19 0.00049 16.3 3.0 42 80-122 37-80 (241)
282 TIGR03288 CoB_CoM_SS_B CoB--Co 47.5 21 0.00053 16.1 3.4 20 87-106 69-88 (290)
283 PRK00843 egsA NAD(P)-dependent 47.4 21 0.00053 16.1 8.2 86 5-125 36-121 (351)
284 PRK13136 consensus 47.1 21 0.00053 16.0 4.7 120 6-140 16-163 (253)
285 TIGR00504 pyro_pdase pyrrolido 46.9 16 0.00041 16.8 2.4 87 207-295 38-140 (220)
286 COG0163 UbiX 3-polyprenyl-4-hy 46.8 21 0.00054 16.0 4.6 152 3-159 2-188 (191)
287 COG4741 Predicted secreted end 46.7 12 0.0003 17.7 1.7 35 130-169 82-116 (175)
288 cd07949 PCA_45_Doxase_B_like_1 46.7 21 0.00054 16.0 3.2 31 71-101 31-61 (276)
289 PTZ00325 malate dehydrogenase; 46.6 12 0.0003 17.7 1.7 27 307-334 259-286 (313)
290 PRK04507 consensus 46.6 21 0.00054 16.0 10.3 104 1-107 1-139 (323)
291 cd06335 PBP1_ABC_ligand_bindin 46.4 21 0.00055 16.0 4.5 42 77-120 56-97 (347)
292 PRK13364 protocatechuate 4,5-d 46.4 21 0.00055 16.0 3.2 30 71-100 31-60 (279)
293 TIGR02875 spore_0_A sporulatio 46.3 14 0.00035 17.3 2.0 34 236-275 155-188 (270)
294 cd03788 GT1_TPS Trehalose-6-Ph 46.2 22 0.00055 15.9 17.7 263 85-380 127-457 (460)
295 cd07950 Gallate_Doxase_N The N 46.2 22 0.00055 15.9 3.2 31 71-101 31-61 (277)
296 cd06348 PBP1_ABC_ligand_bindin 46.0 22 0.00055 15.9 4.1 50 77-128 56-107 (344)
297 PRK07114 keto-hydroxyglutarate 46.0 13 0.00032 17.5 1.8 41 78-120 7-47 (223)
298 cd06341 PBP1_ABC_ligand_bindin 45.9 22 0.00056 15.9 4.1 153 79-256 58-219 (341)
299 KOG1192 consensus 45.8 22 0.00056 15.9 5.4 39 3-42 6-44 (496)
300 COG1179 Dinucleotide-utilizing 45.8 22 0.00056 15.9 8.2 71 18-94 20-103 (263)
301 PRK13931 stationary phase surv 45.8 13 0.00033 17.4 1.8 35 85-119 84-126 (261)
302 cd04795 SIS SIS domain. SIS (S 45.7 21 0.00053 16.1 2.8 32 87-120 46-80 (87)
303 CHL00067 rps2 ribosomal protei 45.7 22 0.00056 15.9 4.8 18 279-296 173-190 (227)
304 pfam03959 FSH1 Serine hydrolas 45.7 22 0.00056 15.9 5.4 44 2-46 3-47 (210)
305 pfam06838 Alum_res Aluminium r 45.3 19 0.00049 16.2 2.6 24 74-97 175-198 (405)
306 cd07364 PCA_45_Dioxygenase_B S 45.3 22 0.00057 15.8 3.2 30 71-100 31-60 (277)
307 PRK03659 glutathione-regulated 45.2 22 0.00057 15.8 3.2 95 91-231 402-496 (602)
308 cd01823 SEST_like SEST_like. A 45.2 22 0.00057 15.8 4.7 31 13-44 29-59 (259)
309 cd06329 PBP1_SBP_like_3 Peripl 45.1 22 0.00057 15.8 4.0 40 86-125 64-110 (342)
310 PRK00421 murC UDP-N-acetylmura 44.9 20 0.0005 16.2 2.6 36 87-128 66-103 (459)
311 pfam07014 Hs1pro-1_C Hs1pro-1 44.7 23 0.00058 15.8 2.9 11 33-43 20-30 (261)
312 KOG3349 consensus 44.7 23 0.00058 15.8 3.9 35 259-293 72-107 (170)
313 COG1091 RfbD dTDP-4-dehydrorha 44.6 23 0.00058 15.8 6.4 80 4-120 1-98 (281)
314 PRK13366 protocatechuate 4,5-d 44.5 23 0.00058 15.8 3.1 30 71-100 31-60 (284)
315 PRK11752 putative glutathione 44.5 6.2 0.00016 19.5 -0.0 22 118-139 4-25 (264)
316 TIGR00421 ubiX_pad polyprenyl 44.1 23 0.00059 15.7 4.2 141 5-156 1-180 (181)
317 TIGR00863 P2X cation transport 44.1 3.5 8.8E-05 21.2 -1.4 18 241-258 313-330 (377)
318 PRK13933 stationary phase surv 43.4 16 0.0004 16.8 1.9 36 83-118 82-125 (253)
319 COG0052 RpsB Ribosomal protein 43.2 24 0.00061 15.6 4.8 38 249-298 154-191 (252)
320 PRK09590 celB cellobiose phosp 42.9 24 0.00062 15.6 5.3 77 5-93 4-81 (104)
321 PRK05693 short chain dehydroge 42.8 24 0.00062 15.6 7.3 32 4-40 1-32 (274)
322 PRK13935 stationary phase surv 42.8 14 0.00037 17.1 1.6 39 82-120 80-126 (255)
323 pfam02670 DXP_reductoisom 1-de 42.6 23 0.00059 15.7 2.7 44 241-284 62-108 (129)
324 PRK13529 malate dehydrogenase; 42.5 23 0.00057 15.8 2.6 26 123-148 208-239 (563)
325 PRK10949 protease 4; Provision 42.5 25 0.00063 15.6 4.6 20 19-39 97-116 (618)
326 TIGR03190 benz_CoA_bzdN benzoy 42.3 25 0.00063 15.6 4.3 38 88-125 88-126 (377)
327 COG0777 AccD Acetyl-CoA carbox 41.9 25 0.00064 15.5 2.8 93 265-366 171-283 (294)
328 cd06355 PBP1_FmdD_like Peripla 41.8 25 0.00064 15.5 4.2 22 212-233 176-197 (348)
329 PRK10529 DNA-binding transcrip 41.7 12 0.0003 17.7 1.1 38 82-120 39-78 (225)
330 cd01844 SGNH_hydrolase_like_6 41.5 25 0.00065 15.5 4.0 24 15-42 19-42 (177)
331 pfam11633 Nsp3 Replicase polyp 41.3 26 0.00065 15.4 3.5 32 77-112 25-56 (142)
332 TIGR00087 surE 5'/3'-nucleotid 41.2 16 0.0004 16.9 1.6 93 195-292 72-174 (326)
333 pfam04227 Indigoidine_A Indigo 40.7 22 0.00057 15.8 2.3 48 262-310 136-193 (293)
334 PRK09814 hypothetical protein; 40.6 26 0.00067 15.4 2.9 109 82-202 57-178 (337)
335 PRK06182 short chain dehydroge 40.5 26 0.00067 15.4 5.6 34 1-40 1-34 (273)
336 PRK13934 stationary phase surv 40.3 18 0.00047 16.4 1.9 34 86-119 82-124 (266)
337 KOG3946 consensus 40.3 13 0.00033 17.4 1.1 12 134-145 150-161 (338)
338 TIGR02469 CbiT precorrin-6Y C5 40.2 13 0.00034 17.3 1.1 69 273-342 29-102 (135)
339 cd07369 PydA_Rs_like PydA is a 40.1 27 0.00068 15.3 3.3 31 71-101 29-59 (329)
340 COG2910 Putative NADH-flavin r 40.1 27 0.00068 15.3 6.0 48 4-57 1-55 (211)
341 COG2197 CitB Response regulato 39.7 27 0.00069 15.3 3.6 33 214-246 62-94 (211)
342 PRK06395 phosphoribosylamine-- 39.7 27 0.00069 15.3 7.6 88 3-118 2-93 (435)
343 pfam02075 RuvC Crossover junct 39.6 27 0.00069 15.3 5.8 75 71-146 40-129 (148)
344 cd01979 Pchlide_reductase_N Pc 39.5 27 0.0007 15.3 9.1 152 78-250 76-251 (396)
345 cd01149 HutB Hemin binding pro 38.7 26 0.00066 15.4 2.4 40 81-123 51-90 (235)
346 TIGR01465 cobM_cbiF precorrin- 38.6 17 0.00044 16.5 1.5 164 103-304 17-201 (252)
347 PRK00346 surE stationary phase 38.5 19 0.00049 16.3 1.7 10 85-94 79-88 (246)
348 TIGR02468 sucrsPsyn_pln sucros 38.3 28 0.00073 15.1 4.9 239 87-368 381-663 (1072)
349 COG0746 MobA Molybdopterin-gua 38.2 29 0.00073 15.1 5.7 113 1-133 2-128 (192)
350 cd06295 PBP1_CelR Ligand bindi 37.9 29 0.00074 15.1 12.0 134 79-234 55-194 (275)
351 KOG2892 consensus 37.7 29 0.00074 15.1 2.7 76 3-94 4-82 (320)
352 PTZ00117 malate dehydrogenase; 37.7 29 0.00074 15.1 4.2 59 270-335 230-290 (313)
353 COG4245 TerY Uncharacterized p 37.6 29 0.00074 15.1 3.5 13 191-203 107-119 (207)
354 PRK05086 malate dehydrogenase; 37.5 20 0.00051 16.2 1.7 33 4-39 1-35 (312)
355 PRK00286 xseA exodeoxyribonucl 37.5 29 0.00075 15.1 8.1 34 193-233 136-169 (443)
356 PRK13367 protocatechuate 4,5-d 37.5 22 0.00056 15.9 1.9 79 71-157 31-121 (418)
357 PRK13373 putative dioxygenase; 37.4 29 0.00075 15.1 3.4 34 71-104 29-62 (344)
358 cd07373 2A5CPDO_A The alpha su 37.2 30 0.00075 15.0 3.1 31 68-98 22-52 (271)
359 COG2204 AtoC Response regulato 37.0 30 0.00076 15.0 3.3 31 88-118 48-80 (464)
360 cd01853 Toc34_like Toc34-like 36.9 30 0.00076 15.0 2.6 77 19-96 17-122 (249)
361 cd06338 PBP1_ABC_ligand_bindin 36.7 30 0.00077 15.0 4.0 49 78-128 61-111 (345)
362 PRK13370 mhpB 3-(2,3-dihydroxy 36.7 30 0.00077 15.0 3.3 49 56-104 9-58 (313)
363 cd03360 LbH_AT_putative Putati 36.6 8.6 0.00022 18.6 -0.3 46 85-132 53-98 (197)
364 TIGR03407 urea_ABC_UrtA urea A 36.6 30 0.00077 15.0 4.2 54 235-288 255-311 (359)
365 PRK06179 short chain dehydroge 36.4 30 0.00078 15.0 7.7 36 1-41 1-36 (270)
366 TIGR03669 urea_ABC_arch urea A 36.2 31 0.00078 14.9 3.6 42 236-277 254-295 (374)
367 TIGR03570 NeuD_NnaD sugar O-ac 36.1 31 0.00078 14.9 6.7 101 5-132 1-101 (201)
368 TIGR01284 alt_nitrog_alph nitr 36.0 15 0.00038 17.0 0.8 39 63-101 127-180 (468)
369 COG3914 Spy Predicted O-linked 36.0 31 0.00079 14.9 11.1 305 11-363 263-594 (620)
370 cd01825 SGNH_hydrolase_peri1 S 36.0 31 0.00079 14.9 5.9 23 73-95 79-101 (189)
371 PRK07735 NADH dehydrogenase su 35.9 21 0.00053 16.0 1.6 33 138-172 380-412 (420)
372 pfam01973 MAF_flag10 Protein o 35.3 32 0.00081 14.8 3.6 82 23-119 15-98 (169)
373 pfam01993 MTD methylene-5,6,7, 35.2 32 0.00081 14.8 3.6 62 5-95 3-66 (276)
374 pfam09861 DUF2088 Uncharacteri 35.1 32 0.00081 14.8 3.4 57 190-246 53-113 (203)
375 PRK11544 hycI hydrogenase 3 ma 34.9 26 0.00066 15.4 1.9 23 81-103 47-69 (156)
376 cd02876 GH18_SI-CLP Stabilin-1 34.9 32 0.00082 14.8 10.0 117 7-146 44-185 (318)
377 cd06268 PBP1_ABC_transporter_L 34.8 32 0.00082 14.8 4.0 38 83-122 61-98 (298)
378 cd06570 GH20_chitobiase-like_1 34.7 32 0.00082 14.8 4.4 84 73-161 66-157 (311)
379 pfam01975 SurE Survival protei 34.6 25 0.00063 15.5 1.8 21 272-292 103-125 (190)
380 cd02067 B12-binding B12 bindin 34.4 33 0.00083 14.8 3.5 89 8-102 2-93 (119)
381 PRK00232 pdxA 4-hydroxythreoni 34.4 33 0.00083 14.7 7.7 121 1-127 2-165 (334)
382 TIGR00603 rad25 DNA repair hel 34.0 13 0.00032 17.5 0.2 99 78-214 502-603 (756)
383 pfam02603 Hpr_kinase_N HPr Ser 34.0 33 0.00085 14.7 5.0 79 34-119 27-110 (127)
384 KOG1602 consensus 33.9 33 0.00085 14.7 5.5 61 104-167 72-134 (271)
385 COG0496 SurE Predicted acid ph 33.9 23 0.00059 15.7 1.6 33 86-118 81-121 (252)
386 cd01829 SGNH_hydrolase_peri2 S 33.6 34 0.00086 14.7 6.2 115 8-172 3-121 (200)
387 COG0159 TrpA Tryptophan syntha 33.4 34 0.00086 14.6 4.2 44 80-125 114-158 (265)
388 smart00732 YqgFc Likely ribonu 33.2 34 0.00087 14.6 4.7 44 75-119 38-89 (99)
389 COG0800 Eda 2-keto-3-deoxy-6-p 33.1 34 0.00087 14.6 2.4 36 82-119 8-43 (211)
390 cd07365 MhpB_like Subunit B of 32.9 34 0.00088 14.6 3.3 47 56-102 9-56 (310)
391 COG0417 PolB DNA polymerase el 32.8 35 0.00088 14.6 3.8 43 74-118 212-255 (792)
392 cd06315 PBP1_ABC_sugar_binding 32.4 35 0.0009 14.5 4.3 39 78-119 46-86 (280)
393 COG2086 FixA Electron transfer 32.4 35 0.0009 14.5 7.7 93 16-121 39-145 (260)
394 cd06347 PBP1_ABC_ligand_bindin 32.4 35 0.0009 14.5 4.1 43 78-122 57-99 (334)
395 COG2984 ABC-type uncharacteriz 32.1 36 0.00091 14.5 4.6 125 75-237 75-199 (322)
396 PRK12767 carbamoyl phosphate s 31.9 36 0.00091 14.5 9.6 96 4-118 2-99 (325)
397 COG3911 Predicted ATPase [Gene 31.8 29 0.00073 15.1 1.7 27 1-29 6-32 (183)
398 pfam04414 tRNA_deacylase D-ami 31.8 36 0.00092 14.5 3.3 23 202-224 47-70 (214)
399 PRK03562 glutathione-regulated 31.7 36 0.00092 14.5 3.3 96 90-231 400-495 (615)
400 cd01146 FhuD Fe3+-siderophore 31.4 36 0.00093 14.4 2.3 38 81-123 58-95 (256)
401 PRK08621 galactose-6-phosphate 31.4 37 0.00093 14.4 3.4 16 95-110 38-53 (142)
402 PRK11658 UDP-4-amino-4-deoxy-L 31.1 13 0.00033 17.4 -0.1 58 85-149 118-178 (379)
403 PRK10360 DNA-binding transcrip 30.9 37 0.00095 14.4 3.4 13 355-367 171-183 (196)
404 TIGR02360 pbenz_hydroxyl 4-hyd 30.7 38 0.00096 14.3 2.6 23 1-24 1-23 (393)
405 pfam03310 Cauli_DNA-bind Cauli 30.6 38 0.00096 14.3 5.8 27 64-90 9-35 (121)
406 TIGR03446 mycothiol_Mca mycoth 30.5 38 0.00096 14.3 3.9 27 74-100 107-133 (283)
407 TIGR03025 EPS_sugtrans exopoly 30.4 38 0.00097 14.3 6.6 34 5-42 127-160 (445)
408 COG0673 MviM Predicted dehydro 30.3 38 0.00097 14.3 6.7 93 1-118 1-95 (342)
409 cd05785 DNA_polB_like2_exo A s 30.3 38 0.00097 14.3 3.6 42 74-117 59-101 (207)
410 cd06349 PBP1_ABC_ligand_bindin 30.2 38 0.00097 14.3 3.9 40 78-119 57-96 (340)
411 COG4378 Uncharacterized protei 30.1 38 0.00098 14.3 2.3 32 86-119 43-76 (103)
412 cd01833 XynB_like SGNH_hydrola 30.1 38 0.00098 14.3 6.5 21 75-95 64-84 (157)
413 cd06358 PBP1_NHase Type I peri 30.0 38 0.00098 14.3 4.0 155 77-256 56-218 (333)
414 cd06331 PBP1_AmiC_like Type I 29.9 39 0.00099 14.3 4.5 41 77-119 56-96 (333)
415 PRK13372 pcmA protocatechuate 29.7 26 0.00066 15.4 1.2 25 71-95 178-202 (444)
416 PRK05872 short chain dehydroge 29.7 39 0.00099 14.2 6.0 39 5-46 10-48 (296)
417 cd07023 S49_Sppa_N_C Signal pe 29.6 39 0.001 14.2 4.9 76 85-165 31-125 (208)
418 PRK09219 xanthine phosphoribos 29.6 39 0.001 14.2 4.6 45 73-120 35-79 (189)
419 pfam09293 RNaseH_C T4 RNase H, 29.4 39 0.001 14.2 3.8 69 311-381 18-92 (122)
420 PRK09191 two-component respons 29.1 40 0.001 14.2 3.2 94 251-344 137-252 (261)
421 PRK02472 murD UDP-N-acetylmura 29.0 15 0.00038 17.0 -0.1 33 86-122 70-104 (450)
422 COG4607 CeuA ABC-type enteroch 28.8 40 0.001 14.1 2.5 141 66-232 84-258 (320)
423 pfam04223 CitF Citrate lyase, 28.5 37 0.00094 14.4 1.8 61 55-118 40-100 (466)
424 PRK05647 purN phosphoribosylgl 28.5 41 0.001 14.1 3.2 129 1-166 1-141 (200)
425 cd07371 2A5CPDO_AB The alpha a 28.5 41 0.001 14.1 3.2 30 71-100 22-51 (268)
426 PRK11706 TDP-4-oxo-6-deoxy-D-g 28.5 16 0.0004 16.8 -0.1 58 86-149 117-177 (375)
427 COG1184 GCD2 Translation initi 28.4 41 0.001 14.1 6.6 58 240-298 161-236 (301)
428 PRK12827 short chain dehydroge 28.4 41 0.001 14.1 5.1 38 1-41 1-40 (251)
429 COG2039 Pcp Pyrrolidone-carbox 28.4 41 0.001 14.1 2.8 13 281-293 123-135 (207)
430 pfam10566 Glyco_hydro_97 Glyco 28.3 41 0.001 14.1 2.8 173 5-214 251-444 (643)
431 cd01544 PBP1_GalR Ligand-bindi 27.9 42 0.0011 14.0 5.2 28 88-119 52-79 (270)
432 cd00636 TroA-like Helical back 27.9 42 0.0011 14.0 5.0 35 82-120 55-89 (148)
433 PRK00300 gmk guanylate kinase; 27.8 42 0.0011 14.0 4.7 27 214-240 107-133 (208)
434 pfam04084 ORC2 Origin recognit 27.5 42 0.0011 14.0 6.1 95 31-126 54-181 (316)
435 PRK12384 sorbitol-6-phosphate 27.5 42 0.0011 14.0 5.3 39 5-46 3-41 (259)
436 PRK07660 consensus 27.4 29 0.00074 15.1 1.1 35 1-40 1-35 (283)
437 cd01822 Lysophospholipase_L1_l 27.3 43 0.0011 14.0 8.3 53 13-95 17-71 (177)
438 PRK10084 dTDP-glucose 4,6 dehy 27.2 43 0.0011 14.0 4.3 32 4-40 1-32 (352)
439 PRK13896 cobyrinic acid a,c-di 27.1 43 0.0011 14.0 3.4 26 4-29 1-29 (432)
440 PTZ00215 ribose 5-phosphate is 27.1 43 0.0011 13.9 4.1 16 95-110 44-59 (156)
441 pfam09370 TIM-br_sig_trns TIM- 27.0 43 0.0011 13.9 4.1 18 46-63 33-52 (268)
442 PRK13726 conjugal transfer pil 26.8 44 0.0011 13.9 4.8 55 317-371 60-126 (187)
443 cd06359 PBP1_Nba_like Type I p 26.8 44 0.0011 13.9 4.4 43 77-121 54-96 (333)
444 TIGR00515 accD acetyl-CoA carb 26.6 44 0.0011 13.9 3.0 39 323-368 250-290 (292)
445 TIGR02262 benz_CoA_lig benzoat 26.4 44 0.0011 13.9 2.7 12 116-127 262-273 (520)
446 PRK12556 tryptophanyl-tRNA syn 26.2 45 0.0011 13.8 2.5 27 1-28 1-27 (328)
447 cd04509 PBP1_ABC_transporter_G 26.1 45 0.0011 13.8 4.4 45 76-122 55-99 (299)
448 PRK12311 rpsB 30S ribosomal pr 26.1 45 0.0011 13.8 4.7 52 63-118 42-94 (332)
449 TIGR01290 nifB nitrogenase cof 26.1 24 0.00062 15.6 0.6 65 54-124 75-147 (461)
450 TIGR00683 nanA N-acetylneurami 26.1 45 0.0011 13.8 2.2 15 101-115 85-99 (294)
451 cd02065 B12-binding_like B12 b 26.0 45 0.0011 13.8 3.0 19 8-26 2-22 (125)
452 PRK01372 ddl D-alanine--D-alan 26.0 45 0.0012 13.8 8.7 32 3-35 4-40 (304)
453 COG2240 PdxK Pyridoxal/pyridox 26.0 45 0.0012 13.8 3.3 19 213-231 91-109 (281)
454 cd07359 PCA_45_Doxase_B_like S 25.9 45 0.0012 13.8 3.7 33 69-101 25-57 (271)
455 KOG2056 consensus 25.9 45 0.0012 13.8 4.5 97 33-151 31-140 (336)
456 pfam02056 Glyco_hydro_4 Family 25.8 45 0.0012 13.8 7.3 30 207-236 118-147 (183)
457 cd01750 GATase1_CobQ Type 1 gl 25.7 46 0.0012 13.8 2.9 48 156-222 20-70 (194)
458 pfam01041 DegT_DnrJ_EryC1 DegT 25.7 19 0.00048 16.3 -0.1 58 86-149 111-171 (363)
459 pfam08915 tRNA-Thr_ED Archaea- 25.7 25 0.00063 15.5 0.5 67 74-172 56-133 (137)
460 pfam02900 LigB Catalytic LigB 25.4 46 0.0012 13.8 3.2 31 71-101 24-54 (265)
461 PRK12921 2-dehydropantoate 2-r 25.4 46 0.0012 13.8 5.1 52 4-60 1-54 (306)
462 PRK07530 3-hydroxybutyryl-CoA 25.3 35 0.0009 14.5 1.2 33 5-42 6-38 (292)
463 LOAD_surE consensus 25.1 44 0.0011 13.9 1.7 23 271-293 103-127 (192)
464 cd06317 PBP1_ABC_sugar_binding 25.0 47 0.0012 13.7 4.3 84 6-120 2-87 (275)
465 cd06320 PBP1_allose_binding Pe 24.9 47 0.0012 13.7 11.4 40 78-120 47-88 (275)
466 KOG0136 consensus 24.9 47 0.0012 13.7 2.7 60 312-376 458-520 (670)
467 cd06345 PBP1_ABC_ligand_bindin 24.9 47 0.0012 13.7 4.5 44 76-121 55-98 (344)
468 TIGR00689 rpiB_lacA_lacB sugar 24.7 48 0.0012 13.7 3.8 18 94-111 38-55 (146)
469 TIGR01743 purR_Bsub pur operon 24.6 48 0.0012 13.7 3.9 51 65-118 105-155 (269)
470 cd07022 S49_Sppa_36K_type Sign 24.6 48 0.0012 13.7 4.5 79 81-164 35-131 (214)
471 TIGR01513 NAPRTase_put putativ 24.6 48 0.0012 13.7 3.2 27 262-288 163-192 (523)
472 TIGR03588 PseC UDP-4-keto-6-de 24.6 20 0.00052 16.1 -0.1 45 86-132 119-166 (380)
473 cd06336 PBP1_ABC_ligand_bindin 24.5 48 0.0012 13.6 4.1 30 80-110 63-92 (347)
474 PRK11697 putative two-componen 24.5 48 0.0012 13.6 7.8 75 4-119 2-79 (239)
475 PRK13557 histidine kinase; Pro 24.5 48 0.0012 13.6 3.1 95 252-347 414-534 (538)
476 COG3641 PfoR Predicted membran 24.4 20 0.00051 16.2 -0.2 51 274-324 209-261 (348)
477 KOG4184 consensus 24.2 49 0.0012 13.6 3.9 43 74-116 224-273 (478)
478 cd05781 DNA_polB_B3_exo The 3' 24.2 49 0.0012 13.6 3.7 41 74-116 49-90 (188)
479 cd06281 PBP1_LacI_like_5 Ligan 24.2 49 0.0012 13.6 3.3 41 78-120 45-85 (269)
480 cd01967 Nitrogenase_MoFe_alpha 24.1 49 0.0012 13.6 10.8 161 74-250 73-258 (406)
481 TIGR01815 TrpE-clade3 anthrani 24.1 42 0.0011 14.0 1.5 48 50-99 134-190 (726)
482 COG1121 ZnuC ABC-type Mn/Zn tr 24.0 49 0.0013 13.6 4.5 20 253-272 191-210 (254)
483 COG1922 WecG Teichoic acid bio 23.9 49 0.0013 13.6 5.1 61 163-233 81-141 (253)
484 cd01537 PBP1_Repressors_Sugar_ 23.7 50 0.0013 13.5 13.5 85 5-120 1-85 (264)
485 COG0167 PyrD Dihydroorotate de 23.6 50 0.0013 13.5 3.0 12 55-66 65-76 (310)
486 COG2129 Predicted phosphoester 23.5 50 0.0013 13.5 2.9 39 1-44 1-41 (226)
487 pfam01513 NAD_kinase ATP-NAD k 23.5 50 0.0013 13.5 4.8 53 66-120 13-65 (243)
488 TIGR02120 GspF general secreti 23.4 20 0.00052 16.1 -0.3 16 341-356 306-321 (414)
489 PRK08507 prephenate dehydrogen 23.2 51 0.0013 13.5 8.4 80 4-110 1-80 (275)
490 TIGR02477 PFKA_PPi diphosphate 23.0 51 0.0013 13.5 7.9 118 2-168 73-204 (566)
491 TIGR01399 hrcV type III secret 23.0 51 0.0013 13.5 2.8 34 321-354 534-570 (709)
492 pfam06050 HGD-D 2-hydroxygluta 23.0 51 0.0013 13.5 4.0 59 75-134 270-337 (345)
493 cd05312 NAD_bind_1_malic_enz N 22.9 51 0.0013 13.4 6.5 118 15-133 5-161 (279)
494 cd06305 PBP1_methylthioribose_ 22.9 52 0.0013 13.4 4.6 42 76-120 43-86 (273)
495 PRK05703 flhF flagellar biosyn 22.9 38 0.00097 14.3 1.0 43 61-103 253-302 (412)
496 cd06356 PBP1_Amide_Urea_BP_lik 22.9 52 0.0013 13.4 3.3 75 77-153 176-250 (334)
497 KOG1532 consensus 22.9 52 0.0013 13.4 3.6 125 129-293 29-153 (366)
498 PRK00871 glutathione-regulated 22.8 33 0.00085 14.7 0.7 39 97-145 39-83 (176)
499 KOG2091 consensus 22.8 52 0.0013 13.4 7.8 105 23-143 133-256 (392)
500 cd07366 3MGA_Dioxygenase Subun 22.8 52 0.0013 13.4 3.4 28 68-95 66-93 (328)
No 1
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=100.00 E-value=0 Score=878.30 Aligned_cols=376 Identities=36% Similarity=0.639 Sum_probs=361.7
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74599997682147899999999997389983999971789994788065044453110136746645999999999986
Q gi|254780767|r 3 SLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVE 82 (383)
Q Consensus 3 ~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~ 82 (383)
+|||||+|||+|||+|||+||++||++ .++++|+|+||++|+++|+++++|+++++||||+||+++++++++.++++++
T Consensus 1 ~mkifi~aGE~SGD~~ga~li~~Lk~~-~~~~~~~GiGG~~M~~~G~~~l~d~~~l~vmG~~evl~~~~~~~~~~~~~~~ 79 (382)
T PRK00025 1 PLRIAIVAGEVSGDLLGAGLIRALKAQ-APNLEFVGIGGPRMEAAGFESLFDMEELAVMGLVEVLPRLPRLLKIRKELKR 79 (382)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHH-CCCCEEEEECCHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 948999906841889999999999831-9896799988299997699544775783130199999779999999999999
Q ss_pred HCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCE
Q ss_conf 10012888689851177657999986630134631111002211003663557999998640156774223200255314
Q gi|254780767|r 83 LIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQRLGGPPT 162 (383)
Q Consensus 83 ~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~~~ 162 (383)
.+++++||+||+|||||||+|+||++|+++++||++|||||||||||+||++++++++|+++||||||++||+++ |+++
T Consensus 80 ~i~~~~Pd~vi~ID~pgFnlrlak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~D~ll~ifPFE~~~f~~~-g~~~ 158 (382)
T PRK00025 80 LLLAEPPDVFILIDAPDFNLRLAKKLKKALPGIPIIHYVSPSVWAWRPGRAKKIAKATDHVLAILPFEAAFYDKL-GVPV 158 (382)
T ss_pred HHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHC-CCCC
T ss_conf 998649999999778306599999999716999889994715654064189999999987610876568999865-9981
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCH-HHHH
Q ss_conf 763882112210013558889761876556505998538743012305111899987640273512620166336-8899
Q gi|254780767|r 163 TFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQ-ENLV 241 (383)
Q Consensus 163 ~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~-~~~~ 241 (383)
+|||||++|.+....++...++++++++++++|++|||||+|||++++|+|+++++.+.+++|+++|++|.+++. ++.+
T Consensus 159 ~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~i~lLPGSR~~EI~~~lPi~l~a~~~l~~~~p~~~fvip~~~~~~~~~i 238 (382)
T PRK00025 159 TYVGHPLADEIPLEPDRAAARAELGLDPDARVLALLPGSRGSEIKRLLPTFLEAAQLLQQRYPDLRFVVPLANPKRREQF 238 (382)
T ss_pred EECCCCHHHHCCCCCCHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH
T ss_conf 35698156432235687999987399855661787058858999997899999999999878993999955887789999
Q ss_pred HHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCEEEE-EECCCCCCEEEEHHHCCC
Q ss_conf 9999604888505520552035788763552331156688876275302540577410000-102467610230244078
Q gi|254780767|r 242 RCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAASGTVILELALCGIPVVSIYKSEWIVNFF-IFYIKTWTCALPNLIVDY 320 (383)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~Yk~~~lt~~i-~~lik~~~i~LpNii~~~ 320 (383)
+..+..++.+..+.+..++++++|++||+|++||||||||+|++|+||||+||+||+||++ +++++++|+||||||+|+
T Consensus 239 ~~~~~~~~~~~~i~~~~~~~~~~l~~sd~ai~~SGTaTLE~al~~~P~Vv~Yk~~~lt~~i~k~lvkv~~isL~Nii~~k 318 (382)
T PRK00025 239 EQLLAEYAPDLSVTLLDGQAREAMAAADAALAASGTVTLEAALLGVPMVVGYKVKPLTFWIAKRLVKVPYISLPNLLAGE 318 (382)
T ss_pred HHHHHHCCCCCCEEEECCCCHHHHHHCCEEEECCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEHHHHHCCC
T ss_conf 99998479998389826841778873888765377799999997198589980789999999996569976524875499
Q ss_pred CCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 42612420548989999999998449899999999999999983899998999999999861
Q gi|254780767|r 321 PLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAEIVLQVL 382 (383)
Q Consensus 321 ~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~~L 382 (383)
+++|||+|++|||++|++++.++++|+++|++|+++++++++.|+ +| ++++||+.|+++|
T Consensus 319 ~ivPEllQ~~~~~~~i~~~~~~ll~d~~~~~~~~~~~~~lr~~L~-~g-as~raA~~Il~~l 378 (382)
T PRK00025 319 ELVPELLQEEATPEKLARALLELLADGARRQALLEGFTELHQYLR-CG-AAERAAQAVLELL 378 (382)
T ss_pred CCCHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC-CC-HHHHHHHHHHHHH
T ss_conf 766134056699999999999996699999999999999999857-89-9999999999999
No 2
>pfam02684 LpxB Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyse the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <= UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyse the fist disaccharide step in the synthesis of lipid-A-disaccharide.
Probab=100.00 E-value=0 Score=852.94 Aligned_cols=369 Identities=31% Similarity=0.512 Sum_probs=344.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99997682147899999999997389983999971789994788065044453110136746645999999999986100
Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELIV 85 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i~ 85 (383)
|||+|||+|||+|||+||++||++ .++++|+|+||++|+++|+++++|+++++||||+||+++++++++.++++++.++
T Consensus 1 Ifi~aGE~SGD~~ga~Li~~Lk~~-~p~i~~~GvGG~~M~~~G~~~l~d~~~lsvmG~~evl~~l~~l~~~~~~~~~~i~ 79 (373)
T pfam02684 1 IFLSAGEASGDILGGELIQNLKEH-YPNLRFIGVGGPKMEAEGFESLANMEEISVMGFIEVLGRLFKLLKIYQKVVKNIL 79 (373)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHC-CCCCEEEEECCHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 989935851899999999999830-9894899988089997799534772784140199999899999999999999874
Q ss_pred CCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEEC
Q ss_conf 12888689851177657999986630134631111002211003663557999998640156774223200255314763
Q gi|254780767|r 86 SSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQRLGGPPTTFV 165 (383)
Q Consensus 86 ~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~~~~fV 165 (383)
+++||++|+|||||||+|+||++|+++.++|++|||||||||||+||++++++++|+|+||||||++||++. |++++||
T Consensus 80 ~~~PD~vIlID~pgFNlrlak~lkk~g~~ipvi~yV~PqvWAWr~~R~k~i~~~~D~ll~IfPFE~~~y~~~-gv~~~fV 158 (373)
T pfam02684 80 KKKPDTLILIDAPDFNLRLAKKLRKLGPKLKIIHYVSPSVWAWRPKRAKIIAKYTDLLLAILPFEKGFFQKF-GLDCRYV 158 (373)
T ss_pred HCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCEEEECHHHHHHHHHHHHHHCCCCCCCHHHHHHH-CCCEEEC
T ss_conf 269988999717615599999999719998789996884221271589999999987312898878999860-9971575
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCH-HHHHHHH
Q ss_conf 882112210013558889761876556505998538743012305111899987640273512620166336-8899999
Q gi|254780767|r 166 GHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQ-ENLVRCI 244 (383)
Q Consensus 166 GHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~-~~~~~~~ 244 (383)
|||++|.+....+....++ ....+++++|++|||||+|||++++|+|+++++++.+++|+++|++|.+++. ++.++..
T Consensus 159 GHPl~d~~~~~~~~~~~~~-~~~~~~~~~i~lLPGSR~~EI~~~lPi~l~aa~~l~~~~~~~~~~ip~~~~~~~~~~~~~ 237 (373)
T pfam02684 159 GHPLLDEIKLYKKRASAKE-LLIDHDEPILALLPGSRKGEIRRLLPPIQVAAQQLSSQFPNLKLLVPLVNKKYEEQIEDT 237 (373)
T ss_pred CCCHHHHHCCCCCHHHHHH-HCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
T ss_conf 9811654013776589997-468987755776788869999999999999999999768991899965887899999999
Q ss_pred HHHCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCEEEE-EECCCCCCEEEEHHHCCCCCC
Q ss_conf 9604888505520552035788763552331156688876275302540577410000-102467610230244078426
Q gi|254780767|r 245 VSKWDISPEIIIDKEQKKQVFMTCNAAMAASGTVILELALCGIPVVSIYKSEWIVNFF-IFYIKTWTCALPNLIVDYPLV 323 (383)
Q Consensus 245 ~~~~~~~~~i~~~~~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~Yk~~~lt~~i-~~lik~~~i~LpNii~~~~iv 323 (383)
...+..+..+....++++++|++||+|++||||||||+|++|+||||+||+||+||++ +++++++|+||||||+|++++
T Consensus 238 ~~~~~~~~~i~~~~~~~~~~~~~sd~al~~SGTaTLE~al~~~P~vV~Yk~~~lty~i~k~lvkv~~isL~Nii~~k~iv 317 (373)
T pfam02684 238 LALENCDVSLLEISGERYEAMFAADAALAKSGTATLEAALAGTPMVVAYRVKPLTFFLAKRLVKIDYISLPNIILNREIV 317 (373)
T ss_pred HHHCCCCCCEEECCCCHHHHHHHCCEEEECCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCEEEHHHHHCCCCCC
T ss_conf 98649998789805724999984865012167699999981999899995778999999999838954434886699867
Q ss_pred CHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHH
Q ss_conf 12420548989999999998449899999999999999983899-9989999999
Q gi|254780767|r 324 PEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTK-KPAGHMAAEI 377 (383)
Q Consensus 324 PEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~-~~a~~~AA~~ 377 (383)
|||+|++|||++|+.++.++|+|+++|++|++++++++++||.+ ++++++||.+
T Consensus 318 PEllQ~~~t~~~ia~~~~~lL~d~~~~~~~~~~~~~~~~~l~~g~~~~~~~aa~~ 372 (373)
T pfam02684 318 PEFIQGECDAHLEAIALLLLLLNGLKAKKQKDRCRKFKQLLRFGQCNSDEQAALI 372 (373)
T ss_pred HHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 3564751789999999999967999999999999999999856899988977753
No 3
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=815.01 Aligned_cols=377 Identities=40% Similarity=0.652 Sum_probs=360.6
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74599997682147899999999997389983999971789994788065044453110136746645999999999986
Q gi|254780767|r 3 SLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVE 82 (383)
Q Consensus 3 ~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~ 82 (383)
.||||+||||+|||+||+.|+++||++++ +++|.|+||++|+++|++++||++++++|||+|||+++|++++.++++++
T Consensus 1 ~~ki~i~AGE~SGDllGa~LikaLk~~~~-~~efvGvgG~~m~aeG~~sl~~~~elsvmGf~EVL~~lp~llk~~~~~~~ 79 (381)
T COG0763 1 MLKIALSAGEASGDLLGAGLIKALKARYP-DVEFVGVGGEKMEAEGLESLFDMEELSVMGFVEVLGRLPRLLKIRRELVR 79 (381)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHCC-CEEEEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 94599990444311468999999986389-83899817678886557655588998782299999988999999999999
Q ss_pred HCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCE
Q ss_conf 10012888689851177657999986630134631111002211003663557999998640156774223200255314
Q gi|254780767|r 83 LIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQRLGGPPT 162 (383)
Q Consensus 83 ~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~~~ 162 (383)
.+..++||++|+|||||||+++||++|+.++++|+||||||||||||++|+.++.+++|+++||||||++||++. |++|
T Consensus 80 ~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~PsVWAWr~~Ra~~i~~~~D~lLailPFE~~~y~k~-g~~~ 158 (381)
T COG0763 80 YILANKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVSPSVWAWRPKRAVKIAKYVDHLLAILPFEPAFYDKF-GLPC 158 (381)
T ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEEECCCEEEECHHHHHHHHHHHHHEEEECCCCHHHHHHC-CCCE
T ss_conf 998559988999678988649999999708999869997853056552168999997617214367788999855-9970
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHH
Q ss_conf 76388211221001355888976187655650599853874301230511189998764027351262016633688999
Q gi|254780767|r 163 TFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVR 242 (383)
Q Consensus 163 ~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~ 242 (383)
+|||||++|.+....+++..+++++++.+.+++++|||||+|||++++|+|.++++.+++++|+++|++|+++...+.+.
T Consensus 159 ~yVGHpl~d~i~~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~~~~~ 238 (381)
T COG0763 159 TYVGHPLADEIPLLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKYRRII 238 (381)
T ss_pred EEECCHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
T ss_conf 89678056423443457899998289977876998168858899987789999999998658996599956847889999
Q ss_pred HHHHHCCC-CCEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCEEEE-EECCCCCCEEEEHHHCCC
Q ss_conf 99960488-8505520552035788763552331156688876275302540577410000-102467610230244078
Q gi|254780767|r 243 CIVSKWDI-SPEIIIDKEQKKQVFMTCNAAMAASGTVILELALCGIPVVSIYKSEWIVNFF-IFYIKTWTCALPNLIVDY 320 (383)
Q Consensus 243 ~~~~~~~~-~~~i~~~~~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~Yk~~~lt~~i-~~lik~~~i~LpNii~~~ 320 (383)
....++.. ..++++.+++++++|.+||+|++||||||||+|++|+||||.||++|+||++ ++++|++|+|||||++|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~a~~~aD~al~aSGT~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~ 318 (381)
T COG0763 239 EEALKWEVAGLSLILIDGEKRKAFAAADAALAASGTATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGR 318 (381)
T ss_pred HHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCHHHHCCC
T ss_conf 99862334576078407457899998418998446799999982999799994458899999986167724436886187
Q ss_pred CCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 42612420548989999999998449899999999999999983899998999999999861
Q gi|254780767|r 321 PLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAEIVLQVL 382 (383)
Q Consensus 321 ~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~~L 382 (383)
+++|||+|++|+|++|++++..++.|+..|+++.+.++++++.++.. +++++||+++++++
T Consensus 319 ~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~~~-~~~e~aA~~vl~~~ 379 (381)
T COG0763 319 EIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLRED-PASEIAAQAVLELL 379 (381)
T ss_pred CCCHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
T ss_conf 30467775316999999999998348676999999999999997589-68899999999874
No 4
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=100.00 E-value=0 Score=805.15 Aligned_cols=372 Identities=26% Similarity=0.462 Sum_probs=336.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 59999768214789999999999738998399997178999478806504445311013674664599999999998610
Q gi|254780767|r 5 KIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELI 84 (383)
Q Consensus 5 ki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i 84 (383)
..||+|||+|||+|||+||++||++. ||++|.|+||++|+++|+++++||++++||||+||++|+|++++.++++++.+
T Consensus 228 ~~FI~AGE~SGD~lGa~Li~~Lk~~~-P~i~F~GVGGp~M~~eGl~slf~me~lsVMG~~EVL~~lp~L~~~~~~l~~~i 306 (607)
T PRK01021 228 SCFLSAGEASGDTLGGNLLKEIKALY-PDIRCFGVGGPQMRQEGLEPLFNMEEFQVSGFWEVLLSLFKLYYRYRKLYKTI 306 (607)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHC-CCCEEEECCHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 75799268625577999999998549-89889963779998768861244677101148999988999999999999999
Q ss_pred CCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEE
Q ss_conf 01288868985117765799998663013463111100221100366355799999864015677422320025531476
Q gi|254780767|r 85 VSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQRLGGPPTTF 164 (383)
Q Consensus 85 ~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~~~~f 164 (383)
.+++||++|+|||||||+|+||++|+++.++|++|||||||||||++|+|++++++|+++||||||++||++ +|++++|
T Consensus 307 ~~~~PD~~I~ID~PdFNlrlak~lkk~gi~ik~vhYVsPsVWAWr~~R~k~i~~~vD~~l~lfPFE~~~~~~-~g~~~~y 385 (607)
T PRK01021 307 LKENPETVICIDFPDFHFLLIKKLRKCGYKGKIIHYVCPSIWAWRPKRKTILEKYLDLLLLILPFEQGLFKN-SPLRTVY 385 (607)
T ss_pred HHCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCEEEECCCHHHHHHHHHHHHEECCCCCHHHHHC-CCCCCEE
T ss_conf 861999999958998788999999972899986899788368866217999999886730526778899950-7998379
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCC-CCHHHHHHH
Q ss_conf 3882112210013558889761876556505998538743012305111899987640273512620166-336889999
Q gi|254780767|r 165 VGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTV-SSQENLVRC 243 (383)
Q Consensus 165 VGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~-~~~~~~~~~ 243 (383)
||||++|.+....+....++++ .++++++|++|||||+|||++++|+|.+++....... ..+++++.+ +...+.+.+
T Consensus 386 VGHPl~e~i~~~~~~~~~r~~l-~~~~k~IIALLPGSR~SEI~RlLPI~~~ai~~~~l~~-~~~~lV~~a~p~~~~~i~e 463 (607)
T PRK01021 386 LGHPLVETISNFQPCASWKEQL-LPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLAQ-THQLLVSSANPKYDHLILD 463 (607)
T ss_pred ECCCCHHHCCCCCCCHHHHHHC-CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCC-CCEEEEECCCHHHHHHHHH
T ss_conf 7896012022347745699861-7788988999089978999987499999999872446-7649995687668899999
Q ss_pred HHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCEEEEE-ECCCC--CCEEEEHHHCCC
Q ss_conf 996048885055205520357887635523311566888762753025405774100001-02467--610230244078
Q gi|254780767|r 244 IVSKWDISPEIIIDKEQKKQVFMTCNAAMAASGTVILELALCGIPVVSIYKSEWIVNFFI-FYIKT--WTCALPNLIVDY 320 (383)
Q Consensus 244 ~~~~~~~~~~i~~~~~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~Yk~~~lt~~i~-~lik~--~~i~LpNii~~~ 320 (383)
..+.++.....++..+.++++|++||+|+++|||||||+|++++||||+||++++||+++ +++|+ +|+||||||+|+
T Consensus 464 ~l~~~~~~~~~II~~~~kyeam~aSDaALaASGTATLE~ALagvPmVVaYKlnpLTyfIAK~LvKI~lp~vsLPNILagr 543 (607)
T PRK01021 464 VLQQEGCLHSKIVPSQFRYELMRECDCALAKCGTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKILLPAYSLPNIILGS 543 (607)
T ss_pred HHHHCCCCCCEECCCHHHHHHHHHCCEEEECCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCHHHCCC
T ss_conf 99864898845717325899998588998887789999998388989999678279999999997257512113011699
Q ss_pred CCCCHHH--CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 4261242--054898999999999844989999999999999998389999899999999986
Q gi|254780767|r 321 PLVPEYF--NSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAEIVLQV 381 (383)
Q Consensus 321 ~ivPEli--Q~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~~ 381 (383)
+|||||| |+|||||+|+.++ .+|+|++.|++|+++|+++.+-+.++..+++-.-+.|.+.
T Consensus 544 ~VVPElI~gQ~D~~PE~iAaAl-~lL~~p~~~ekq~~~c~~~~~~~~~~~~~~~e~~~~~~~~ 605 (607)
T PRK01021 544 VIFPEFIGGKKDFHPEEVAAAL-DILKTSQSKEKQKEACRDLYKAMTTSAITSKECLKRIFET 605 (607)
T ss_pred CCCCCCCCCCCCCCHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 8666636776658989999999-9871915679999999999999871788789999999863
No 5
>TIGR00215 lpxB lipid-A-disaccharide synthase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described . This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site . The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process.
Probab=100.00 E-value=0 Score=390.71 Aligned_cols=375 Identities=31% Similarity=0.494 Sum_probs=341.4
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74599997682147899999999997389983999971789994788065044453110136746645999999999986
Q gi|254780767|r 3 SLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVE 82 (383)
Q Consensus 3 ~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~ 82 (383)
+..+.+++||.|||++++.+.+.+++.. ++.++.|++|++|.++|++.+++..+++++|+.|++.+++.+.+...++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~g~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 84 (393)
T TIGR00215 6 PLTIALVAGELSGDLLGGGLRRQLPEHY-PNARFVGLGGPRLAAEGCELLYDPEELGVLGLTEVLGRLGPLLKIRKELVQ 84 (393)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0123221200001467889988645321-220100023313454124555203566554378888777888888889998
Q ss_pred HCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC--CCCHHHHHHHHHHHCCCCCCCHHHHHCCCCC
Q ss_conf 10012888689851177657999986630134631111002211003--6635579999986401567742232002553
Q gi|254780767|r 83 LIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWR--EGRARKMCAYINQVISILPFEKEVMQRLGGP 160 (383)
Q Consensus 83 ~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr--~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~ 160 (383)
.....+||+.+.+|+|+||+.++..+++..+++|++||++|++|+|+ +||++++.+++|.++.++|||..||++. +.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~w~w~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~ 163 (393)
T TIGR00215 85 LLKQAPPDLLVGIDAPDFNLTLANELKKKDPGLKTLYYVSPSVWAWRPTKWRAKKLGKATDLLLAFLPFEKGFYDKK-GL 163 (393)
T ss_pred HHHHCCCEEEEECCCCCCCCHHHHHHHHCCCCCCEEEEECCCHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH-CC
T ss_conf 75304630255403467650123232200477514444333001025026788888887767765401034454420-67
Q ss_pred CEEECCCCCCCCCCCC-CCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHH
Q ss_conf 1476388211221001-355888976187655650599853874301230511189998764027351262016633688
Q gi|254780767|r 161 PTTFVGHPLSSSPSIL-EVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQEN 239 (383)
Q Consensus 161 ~~~fVGHPl~d~~~~~-~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~ 239 (383)
++.|+|||+.|.+... .+....++..+++.+...+.++||||.+|+....|.++.++..+.+..|+.+++++.......
T Consensus 164 ~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (393)
T TIGR00215 164 PCRFVGHPLLDAIPLEKPDRGSAREKLGIDHNGETLALLPGSRGSELEYLLPLFLKAAQLLEEQLPDLKLLLPLPNKKRG 243 (393)
T ss_pred CEEECCCHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHH
T ss_conf 50220422454432103312334565168866636888306412578887688766888876414752122220001221
Q ss_pred -HHHHHHHHCCCCCEEEEECCCCHH-HHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCEEEEE-ECCCCC--CEEEE
Q ss_conf -999999604888505520552035-7887635523311566888762753025405774100001-024676--10230
Q gi|254780767|r 240 -LVRCIVSKWDISPEIIIDKEQKKQ-VFMTCNAAMAASGTVILELALCGIPVVSIYKSEWIVNFFI-FYIKTW--TCALP 314 (383)
Q Consensus 240 -~~~~~~~~~~~~~~i~~~~~~~~~-~l~~sd~ai~~SGTaTLE~al~g~P~IV~Yk~~~lt~~i~-~lik~~--~i~Lp 314 (383)
.+......+.-+..+....++... .+..+|+++.+|||+++|++++++|+++.|+..++++++. ++++.. |++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 323 (393)
T TIGR00215 244 LQFERLKAEFGPDLTLHLLDGDARLTALVAADLALLASGTAALEAALLGTPFVLGYRVKPLTFLLARRLVKLDLPYVSLP 323 (393)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 35788888634663135422420234565543455421224566766337411010111578999888875226633213
Q ss_pred HHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 244078426124205489899999999984498----999999999999999838999989999999998
Q gi|254780767|r 315 NLIVDYPLVPEYFNSMIRSEALVRWIERLSQDT----LQRRAMLHGFENLWDRMNTKKPAGHMAAEIVLQ 380 (383)
Q Consensus 315 Nii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~----~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~ 380 (383)
|++.++.+.||.+|++|+++.++.....++.+. +.+......+.+++..++.++...+. +..+++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 392 (393)
T TIGR00215 324 NLLANRGLVPELLQEECTPEPLAEALLLLLLNGLKAYKESHKLAQDFEELRERLGCPGDCERA-AQAVLE 392 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHC
T ss_conf 566532200123211223567888878876312556667788888888898875056303567-777632
No 6
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=100.00 E-value=0 Score=338.83 Aligned_cols=339 Identities=20% Similarity=0.216 Sum_probs=258.9
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEE----CCHHHHHCCCEEEECHHHCCEEEHH---------HHHHHHHHH
Q ss_conf 999768214789999999999738998399997----1789994788065044453110136---------746645999
Q gi|254780767|r 7 AVIAGEISGDLLAGDLIKSLKEMVSYPINLVGV----GGPSLQKEGLVSLFDFSELSVIGIM---------QVVRHLPQF 73 (383)
Q Consensus 7 ~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~gi----GG~~m~~~G~~~~~~~~~l~v~G~~---------evl~~~~~~ 73 (383)
|||-|.-. |+||++++++|++. .|+.++.++ +|..|+++|+..+.+.+++++.||+ |+..-+..+
T Consensus 2 ~lSNGhGE-Dl~a~~i~~~L~~~-~p~~~v~alPLVG~G~ay~~~gi~iig~~~~lpSGGf~~~~~~~l~~Dl~~Gl~~~ 79 (396)
T TIGR03492 2 FLSNGHGE-DLIAARIAKALLQL-SPDLNLEALPLVGEGRAYQNLGIPIIGPTKELPSGGFSYQSLRGLLRDLRAGLVGL 79 (396)
T ss_pred CCCCCCHH-HHHHHHHHHHHHHH-CCCCCEEEECCCCCCHHHHHCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 40676358-89999999999962-99996698513478499997899487466435774622436778999997036999
Q ss_pred -HHHHHHHHHHCCCCCCCEEEEE-CHHHHHHHHHHHHHHHCCCCCCEEEECC---CCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf -9999999861001288868985-1177657999986630134631111002---2110036635579999986401567
Q gi|254780767|r 74 -IFRINQTVELIVSSKPDVLLIV-DNPDFTHRVAKRVRKKMPNLPIINYVCP---SVWAWREGRARKMCAYINQVISILP 148 (383)
Q Consensus 74 -~~~~~~~~~~i~~~~Pd~vi~i-D~pgFnl~lak~lkk~~~~ipvi~yv~P---qvWAWr~~R~k~~~~~~d~~~~ifp 148 (383)
++....+.++ ..+.|.++.| |. +.+.+|... |.|.++|..| .+|+|+++|...........-+.+|
T Consensus 80 ~~~q~~~~~~~--~~~~~~ilavGD~--~pl~~A~~s-----g~p~~~~~~~~S~yy~~~~~~~~~~~~~~~~~g~~~~P 150 (396)
T TIGR03492 80 TLGQWRALRKW--AKKGDLIVAVGDI--VPLLFAWLS-----GKPYAFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLP 150 (396)
T ss_pred HHHHHHHHHHH--CCCCCEEEEECCH--HHHHHHHHC-----CCCCEEEEECCCCEEEECCCCCCCHHHHHCCCEEECCH
T ss_conf 99999999985--4458879996671--888999981-----89816997045323660687753012332155178167
Q ss_pred CCHH-------------------HHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHH
Q ss_conf 7422-------------------320025531476388211221001355888976187655650599853874301230
Q gi|254780767|r 149 FEKE-------------------VMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKI 209 (383)
Q Consensus 149 FE~~-------------------~f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~ 209 (383)
||.. .+++ +|++++|+|||++|...... ...+.++.+.|+||||||.+|+.+|
T Consensus 151 we~~lm~~~rc~~Vf~RD~lTA~~L~~-~gi~a~f~GnPmMD~l~~~~-------~~~~~~~~~~I~LLPGSR~pEa~~n 222 (396)
T TIGR03492 151 WERWLMRSRRCLAVFVRDRLTARDLRR-QGVRASYLGNPMMDGLEPPE-------RKPLLTGRFRIALLPGSRPPEAYRN 222 (396)
T ss_pred HHHHHHCCCCCCEEECCCHHHHHHHHH-CCCCEEEECCCHHCCCCCCC-------CCCCCCCCCEEEEECCCCHHHHHHH
T ss_conf 799974096652995055887999997-79964960873413788888-------7667887867999589885999987
Q ss_pred CCCHHHHHHHHHHCCCCCEEEECCCCCH-HHHHHHHHHHCC----------------CCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 5111899987640273512620166336-889999996048----------------88505520552035788763552
Q gi|254780767|r 210 LPFFESAVASLVKRNPFFRFSLVTVSSQ-ENLVRCIVSKWD----------------ISPEIIIDKEQKKQVFMTCNAAM 272 (383)
Q Consensus 210 lP~~l~~~~~l~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~----------------~~~~i~~~~~~~~~~l~~sd~ai 272 (383)
+|.|++++..+.+..| ++|.++.+++. ...+...+...+ .+..+.+..+..+++++.||++|
T Consensus 223 l~~~L~a~~~l~~~~~-~~f~~alap~l~~~~l~~~l~~~Gw~~~~~~~~~~~~~~~~~~~v~~~~~~f~~~l~~adl~i 301 (396)
T TIGR03492 223 LKLLLRALEALPDSQP-FVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADLGI 301 (396)
T ss_pred HHHHHHHHHHHCCCCC-EEEEEEECCCCCHHHHHHHHHHCCCEECCCCCCCCHHEECCCEEEEEECCCHHHHHHHCHHHH
T ss_conf 9999999996341488-699998689999899999999659700578654200010487689997384899998551144
Q ss_pred CCCHHHHHHHHHHCCCEEEECCCCC-CEEEEEE-CCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHH
Q ss_conf 3311566888762753025405774-1000010-2467610230244078426124205489899999999984498999
Q gi|254780767|r 273 AASGTVILELALCGIPVVSIYKSEW-IVNFFIF-YIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQR 350 (383)
Q Consensus 273 ~~SGTaTLE~al~g~P~IV~Yk~~~-lt~~i~~-lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r 350 (383)
++|||||+|++.+|+|+|++|..++ +|+.+++ -.+ ++|..+.+ .+.+|+++++.+..++.|++++
T Consensus 302 a~AGTAteQ~vgLG~Pvv~l~g~GPQfT~~fA~~Q~R---------LLG~sv~~----~~~~p~~ia~~~~~lL~d~~~~ 368 (396)
T TIGR03492 302 AMAGTATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSR---------LLGGSVFL----ASKNPEQAAQVVRQLLADPELL 368 (396)
T ss_pred HCCCCHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH---------HCCCEEEE----CCCCHHHHHHHHHHHHCCHHHH
T ss_conf 4377099999871898799727872777999999998---------62753352----6899999999999985499999
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 99999999999983899998999999999861
Q gi|254780767|r 351 RAMLHGFENLWDRMNTKKPAGHMAAEIVLQVL 382 (383)
Q Consensus 351 ~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~~L 382 (383)
+++. ++.+++||.+|++ +++|+.|++.|
T Consensus 369 ~~~~---~~gr~RlG~~Gas-~RiA~~il~~L 396 (396)
T TIGR03492 369 ERCR---RNGQERMGPPGAS-ARIAESILKQL 396 (396)
T ss_pred HHHH---HHHHHHCCCCCHH-HHHHHHHHHHC
T ss_conf 9999---9999855886588-99999999519
No 7
>PRK00726 murG N-acetylglucosaminyl transferase; Provisional
Probab=99.96 E-value=2.2e-26 Score=194.07 Aligned_cols=340 Identities=15% Similarity=0.205 Sum_probs=229.9
Q ss_pred EEEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEEEECCHH-HHHCCCE-EEECHHHCCEEEH-----HHHHHHHHHHHHH
Q ss_conf 5999976821478999-99999997389983999971789-9947880-6504445311013-----6746645999999
Q gi|254780767|r 5 KIAVIAGEISGDLLAG-DLIKSLKEMVSYPINLVGVGGPS-LQKEGLV-SLFDFSELSVIGI-----MQVVRHLPQFIFR 76 (383)
Q Consensus 5 ki~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~giGG~~-m~~~G~~-~~~~~~~l~v~G~-----~evl~~~~~~~~~ 76 (383)
||+|++|.+.|+++.| .+.++|+++ +.++..+|..+ |++.-+. .-+++..+.+.|+ +.-++...++.+.
T Consensus 3 kI~i~~GGTGGHi~Palala~~L~~~---g~ev~~ig~~~g~E~~~v~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~ 79 (359)
T PRK00726 3 KILLAGGGTGGHVFPALALAEELKKR---GWEVLWLGTKRGMEARLVPKAGIEFHFIPIGGLRRKGSLANLKAPFKLLKG 79 (359)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHC---CCEEEEEECCCHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 89999588689999999999999838---798999978826865404414983899777888987879999999999999
Q ss_pred HHHHHHHCCCCCCCEEEEE-CHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCCCCHHHH
Q ss_conf 9999861001288868985-11776579999866301346311110022110036635-579999986401567742232
Q gi|254780767|r 77 INQTVELIVSSKPDVLLIV-DNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRA-RKMCAYINQVISILPFEKEVM 154 (383)
Q Consensus 77 ~~~~~~~i~~~~Pd~vi~i-D~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~-k~~~~~~d~~~~ifpFE~~~f 154 (383)
+.+....+++++||+||+. .|+.|=.-+|.++. ++|++-.= ... -.||+ |.+.++.|.+++-||--..+|
T Consensus 80 ~~~~~~il~~~kPd~Vig~GGY~s~P~~laA~l~----~iP~iiHE-qN~---v~G~aNr~l~~~a~~i~~~f~~~~~~~ 151 (359)
T PRK00726 80 VLQARKILKRFKPDVVVGFGGYVSGPAGLAARLL----GIPLVIHE-QNA---VPGLANKLLARFAKKVATAFEETPKAF 151 (359)
T ss_pred HHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHC----CCCEEEEC-CCC---CCCCCHHHHHHHCCEEEECCHHHHHCC
T ss_conf 9999999997499999978974128999999982----99869974-542---356233788885097899775554037
Q ss_pred HCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 00255314763882112210013558889761876556505998538743012305111899987640273512620166
Q gi|254780767|r 155 QRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTV 234 (383)
Q Consensus 155 ~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~ 234 (383)
.+ .++.++|+|+..++....... . ....++.++|+++.||..++.-+ ..+.+++..+.++ .+++++..+.
T Consensus 152 ~~---~k~~~~G~PvR~~~~~~~~~~-~---~~~~~~~~~iLV~GGSqGa~~~N--~~v~~~l~~l~~~-~~~~i~~~~G 221 (359)
T PRK00726 152 PK---AKAVVTGNPVREEILALPAPA-F---RLAGRGPPTLLVVGGSQGARVLN--EAVPEALALLPEE-LRIQVIHQTG 221 (359)
T ss_pred CC---CCEEEECCCCCHHHHCCCHHH-H---HHCCCCCCEEEEECCCCHHHHHH--HHHHHHHHHHHHC-CCEEEEEECC
T ss_conf 62---455996784027766143333-3---21047885799976852047899--9999999987652-5908999828
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHH-HHHHHCCCEEEE-CCC--CCCEEEEEE-CCCCC
Q ss_conf 3368899999960488850552055203578876355233115668-887627530254-057--741000010-24676
Q gi|254780767|r 235 SSQENLVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAASGTVIL-ELALCGIPVVSI-YKS--EWIVNFFIF-YIKTW 309 (383)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd~ai~~SGTaTL-E~al~g~P~IV~-Yk~--~~lt~~i~~-lik~~ 309 (383)
+...+.++..+.+.+.+..+.-..++..++|+.||++|+.||..|+ |++.+|+|+|++ |.- .--.+.-++ +.+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~v~~f~~~m~~~~~~aDlvIsRaGa~Ti~E~~~~g~P~IlIP~p~a~~~HQ~~NA~~l~~~g 301 (359)
T PRK00726 222 KKDLEEVRAAYAELGVNAEVVPFIDDMAAAYAAADLVICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAG 301 (359)
T ss_pred CCHHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCEEEECCCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 40399999999865997697575231899874088999889832699999828986998368777538999999999789
Q ss_pred CEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 1023024407842612420548989999999998449899999999999999983899998999999999861
Q gi|254780767|r 310 TCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAEIVLQVL 382 (383)
Q Consensus 310 ~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~~L 382 (383)
. + .++ -|++++++.+.+.+.++++|++.+++|.++.+ .++.+.++.+ -++.|.++.
T Consensus 302 a-a--------~~i---~e~~~~~~~L~~~i~~ll~d~~~l~~m~~~~~----~~~~~~a~~~-i~~~i~~~~ 357 (359)
T PRK00726 302 A-A--------KLI---PQSDLTPERLAEALLELLSDRERLEAMAEAAR----ALGIPDAAER-LADLIEKLA 357 (359)
T ss_pred C-E--------EEE---ECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH----CCCCCCHHHH-HHHHHHHHH
T ss_conf 9-9--------995---31469999999999999869999999999997----2489789999-999999985
No 8
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.94 E-value=9e-25 Score=183.42 Aligned_cols=333 Identities=16% Similarity=0.213 Sum_probs=219.8
Q ss_pred EEEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEEEECCHH-HHHCCCEEE-ECHHHCCEEE-----HHHHHHHHHHHHHH
Q ss_conf 5999976821478999-99999997389983999971789-994788065-0444531101-----36746645999999
Q gi|254780767|r 5 KIAVIAGEISGDLLAG-DLIKSLKEMVSYPINLVGVGGPS-LQKEGLVSL-FDFSELSVIG-----IMQVVRHLPQFIFR 76 (383)
Q Consensus 5 ki~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~giGG~~-m~~~G~~~~-~~~~~l~v~G-----~~evl~~~~~~~~~ 76 (383)
||+|+||.+.|+++.+ .+.++|+++ +. ++..+|.++ |+..-+... +++..+...| .+.-+..+.++...
T Consensus 1 ki~i~~GGTGGHi~Palala~~L~~~-g~--~V~~i~~~~g~e~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRER-GA--EVLFLGTKRGLEARLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLLKG 77 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHC-CC--EEEEEECCCHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 98999478589999999999999978-79--8999987836864234413994899768887888739999999999999
Q ss_pred HHHHHHHCCCCCCCEEEEE-CHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCCCCHHHH
Q ss_conf 9999861001288868985-11776579999866301346311110022110036635-579999986401567742232
Q gi|254780767|r 77 INQTVELIVSSKPDVLLIV-DNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRA-RKMCAYINQVISILPFEKEVM 154 (383)
Q Consensus 77 ~~~~~~~i~~~~Pd~vi~i-D~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~-k~~~~~~d~~~~ifpFE~~~f 154 (383)
..+....+++++||+||+. -|+.|=.-+|.++. +||++-. -...+ .+|+ |.+.++.|.+++-||-..+++
T Consensus 78 ~~~~~~~l~~~kPd~vi~~GGY~s~P~~laA~~~----~iP~~ih-EqN~v---~G~anr~l~~~a~~i~~~f~~~~~~~ 149 (350)
T cd03785 78 VLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLL----GIPLVIH-EQNAV---PGLANRLLARFADRVALSFPETAKYF 149 (350)
T ss_pred HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHC----CCCCEEE-CCCCC---CCHHHHHHCCCCCEEEECCHHHHHCC
T ss_conf 9999999996499999988981038999999972----9985565-67722---57132332100398998575654124
Q ss_pred HCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 00255314763882112210013558889761876556505998538743012305111899987640273512620166
Q gi|254780767|r 155 QRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTV 234 (383)
Q Consensus 155 ~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~ 234 (383)
. +-++.|||+|+.+++.... ......+.+++.++|+++.||..+..-+ ..+.+++..+.+ .+++++..+.
T Consensus 150 ~---~~k~~~vG~PvR~~~~~~~---~~~~~~~~~~~~~~iLv~GGSqGa~~ln--~~v~~~~~~l~~--~~~~ii~~~G 219 (350)
T cd03785 150 P---KDKAVVTGNPVREEILALD---RERARLGLRPGKPTLLVFGGSQGARAIN--EAVPEALAELLR--KRLQVIHQTG 219 (350)
T ss_pred C---CCCEEEECCCCCHHHHCCC---HHHHHCCCCCCCEEEEEECCCCHHHHHH--HHHHHHHHHHHH--CCCEEEEECC
T ss_conf 6---6777996885226664143---4467527898973999984872047899--999999998764--4968999838
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHH-HHHHHCCCEEEE-CCCC--CCEEEEEE-CCCCC
Q ss_conf 3368899999960488850552055203578876355233115668-887627530254-0577--41000010-24676
Q gi|254780767|r 235 SSQENLVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAASGTVIL-ELALCGIPVVSI-YKSE--WIVNFFIF-YIKTW 309 (383)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd~ai~~SGTaTL-E~al~g~P~IV~-Yk~~--~lt~~i~~-lik~~ 309 (383)
+...+.++..+...+.+..+.-..++..++|+.||++|+.||..|+ |++.+|+|+|++ |..+ --.+.-+. +.+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~v~~f~~~m~~~l~~aDlvIsraGa~Ti~E~~~~g~P~IlIP~p~a~d~hQ~~NA~~l~~~g 299 (350)
T cd03785 220 KGDLEEVKKAYEELGVNYEVFPFIDDMAAAYAAADLVISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKAG 299 (350)
T ss_pred CCHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHCCEEEECCCCCHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 40089999999866998899251889999986198899779842599999819986998458777665999999999889
Q ss_pred CEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 10230244078426124205489899999999984498999999999999999838999989999
Q gi|254780767|r 310 TCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMA 374 (383)
Q Consensus 310 ~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~A 374 (383)
.. .++. |++++++.+.+.+.++++|++.+++|.++.++ ++.+.++.+++
T Consensus 300 ~a---------~~i~---e~~~~~~~L~~~i~~ll~d~~~l~~m~~~~~~----~~~~~a~~~i~ 348 (350)
T cd03785 300 AA---------VLIP---QEELTPERLAAALLELLSDPERLKAMAEAARS----LARPDAAERIA 348 (350)
T ss_pred CE---------EEEE---CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHC----CCCCCHHHHHH
T ss_conf 99---------9950---02499999999999998799999999999874----58979999984
No 9
>PRK12446 N-acetylglucosaminyl transferase; Reviewed
Probab=99.94 E-value=1.9e-24 Score=181.28 Aligned_cols=333 Identities=11% Similarity=0.123 Sum_probs=215.1
Q ss_pred EEEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEEEECCHH-HHHCCCE-EEECHHHCCEEEH-----HHHHHHHHHHHHH
Q ss_conf 5999976821478999-99999997389983999971789-9947880-6504445311013-----6746645999999
Q gi|254780767|r 5 KIAVIAGEISGDLLAG-DLIKSLKEMVSYPINLVGVGGPS-LQKEGLV-SLFDFSELSVIGI-----MQVVRHLPQFIFR 76 (383)
Q Consensus 5 ki~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~giGG~~-m~~~G~~-~~~~~~~l~v~G~-----~evl~~~~~~~~~ 76 (383)
||+++||.+.|+++.| .+.++|+++ +.++. .+|.++ |++.-+. .-+++..+...|+ +.-++...++.+.
T Consensus 3 kIii~~GGTGGHi~Palala~~L~~~-~~~v~--~ig~~~g~e~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~ 79 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPKLIED-NWDIS--YIGSHQGIEKTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKG 79 (352)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHC-CCEEE--EEECCCHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 79999587588899999999999848-99599--9988960543044504996899544772785529999999999999
Q ss_pred HHHHHHHCCCCCCCEEEEE-CHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCCCCHHHH
Q ss_conf 9999861001288868985-11776579999866301346311110022110036635-579999986401567742232
Q gi|254780767|r 77 INQTVELIVSSKPDVLLIV-DNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRA-RKMCAYINQVISILPFEKEVM 154 (383)
Q Consensus 77 ~~~~~~~i~~~~Pd~vi~i-D~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~-k~~~~~~d~~~~ifpFE~~~f 154 (383)
+-+....+++.+||+||+. -|+.|=.-+|.++. ++|++-+=. ... .||+ |.+.++.+.+++-||--.++|
T Consensus 80 ~~~s~~il~~~kPd~Vig~GGY~S~P~~lAA~ll----~iP~~ihEq-Nav---~G~aNr~l~~~a~~i~~~f~~~~~~~ 151 (352)
T PRK12446 80 VMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLN----RVPVLLHES-DMT---PGLANKIALRFASKIFVTFEEAAKHL 151 (352)
T ss_pred HHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHC----CCCEEEECC-CHH---HHHHHHHHHHHHCCEEECCHHHHHCC
T ss_conf 9999999996399999974987779999999985----999699887-467---77899999987071289962455208
Q ss_pred HCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 00255314763882112210013558889761876556505998538743012305111899987640273512620166
Q gi|254780767|r 155 QRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTV 234 (383)
Q Consensus 155 ~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~ 234 (383)
.+ -++.++|+|+.+++... +..+.+...++++++++|+++.||..++.-+ ..+.+++..+.+ +++++..+.
T Consensus 152 ~~---~k~~~tGnPvR~~i~~~-~~~~~~~~~~~~~~~~~iLV~GGSqGA~~iN--~~v~~~l~~l~~---~~~iih~~g 222 (352)
T PRK12446 152 PK---EKVIYTGSPVREEVLKG-NREKGLAFLGFSRKKPVITIMGGSLGAKKIN--ETVREALPELLL---KYQIVHLCG 222 (352)
T ss_pred CC---CCEEECCCCCCHHHHCC-CHHHHHHHCCCCCCCCEEEEECCCHHHHHHH--HHHHHHHHHHHH---CCEEEEECC
T ss_conf 86---73687488620765403-5566787548887785799973751179999--999999999851---977999928
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHH-HHHHHCCCEEEEC-CCCC---CEEEEEE-CCCC
Q ss_conf 3368899999960488850552055203578876355233115668-8876275302540-5774---1000010-2467
Q gi|254780767|r 235 SSQENLVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAASGTVIL-ELALCGIPVVSIY-KSEW---IVNFFIF-YIKT 308 (383)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd~ai~~SGTaTL-E~al~g~P~IV~Y-k~~~---lt~~i~~-lik~ 308 (383)
....+ ...........+....++..++|+.||++|+.||..|+ |++..|+|+|.+- ..+- -.+.-++ +.+.
T Consensus 223 ~~~~~---~~~~~~~~~~~~~~~~~~m~~~~~~aDlvIsRAGAsTiaEl~~~g~PsIlIP~p~~a~~nHQ~~NA~~l~~~ 299 (352)
T PRK12446 223 KGNLD---DSLQNKEGYRQFEYVHGELPDILAMTDFVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQ 299 (352)
T ss_pred CCCHH---HHHHCCCCCEECCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHC
T ss_conf 77156---898501360765724554999998498899778702899999829988996289877757599999999977
Q ss_pred CCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 610230244078426124205489899999999984498999999999999999838999989999999998
Q gi|254780767|r 309 WTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAEIVLQ 380 (383)
Q Consensus 309 ~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~ 380 (383)
... .+++ |+++|++.+.+.+.++++|++.. ++...+++.+.++.++ ++.|.|
T Consensus 300 gaa---------~vi~---e~~l~~~~L~~~i~~l~~n~~~~-------~~~~kk~~~p~aa~~I-~d~i~e 351 (352)
T PRK12446 300 GYA---------SVLY---EEDVTVNSLIKHVEELSHNNEKY-------KTALKKYNGKEAIQTI-IDHISE 351 (352)
T ss_pred CCE---------EEEE---CCCCCHHHHHHHHHHHHHCHHHH-------HHHHHHCCCCCHHHHH-HHHHHC
T ss_conf 988---------9964---14699999999999998499999-------9999850795599999-999851
No 10
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=5.3e-23 Score=171.73 Aligned_cols=335 Identities=16% Similarity=0.215 Sum_probs=230.9
Q ss_pred CEEEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEEEEC-CHHHHHCCCEEE------ECHHHCCEEEHHHHHHHHHHHHH
Q ss_conf 45999976821478999-99999997389983999971-789994788065------04445311013674664599999
Q gi|254780767|r 4 LKIAVIAGEISGDLLAG-DLIKSLKEMVSYPINLVGVG-GPSLQKEGLVSL------FDFSELSVIGIMQVVRHLPQFIF 75 (383)
Q Consensus 4 mki~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~giG-G~~m~~~G~~~~------~~~~~l~v~G~~evl~~~~~~~~ 75 (383)
|+|++.+|-+.|+++.| .+.++|+++ +.+ ++..+| +.+|+..=.... .+...+--.+.+..++...++++
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~-g~~-~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKR-GWE-QVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRRKGSLKLLKAPFKLLK 78 (357)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHC-CCC-EEEEECCCCHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 939999667766577999999999960-971-799944663444320545670799986465565650667886999999
Q ss_pred HHHHHHHHCCCCCCCEEEEE-CHHHHHHHHHHHHHHHCCCCCCE-E---EECCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 99999861001288868985-11776579999866301346311-1---1002211003663557999998640156774
Q gi|254780767|r 76 RINQTVELIVSSKPDVLLIV-DNPDFTHRVAKRVRKKMPNLPII-N---YVCPSVWAWREGRARKMCAYINQVISILPFE 150 (383)
Q Consensus 76 ~~~~~~~~i~~~~Pd~vi~i-D~pgFnl~lak~lkk~~~~ipvi-~---yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE 150 (383)
...+..+.+++.+||+|++. -||-+---+|... .+||++ | +++=..|- .+.++.+.+++-||-.
T Consensus 79 ~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~----~~iPv~ihEqn~~~G~ank-------~~~~~a~~V~~~f~~~ 147 (357)
T COG0707 79 GVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKL----LGIPVIIHEQNAVPGLANK-------ILSKFAKKVASAFPKL 147 (357)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHH----CCCCEEEEEECCCCCHHHH-------HHHHHEEEEEECCCHH
T ss_conf 9999999999709989995798634649999861----6998799973466426564-------5323012577125112
Q ss_pred HHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCC-CCEE
Q ss_conf 223200255314763882112210013558889761876556505998538743012305111899987640273-5126
Q gi|254780767|r 151 KEVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNP-FFRF 229 (383)
Q Consensus 151 ~~~f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~-~~~~ 229 (383)
..++.+ .++.++|+|+...+.. ......+...+. ++++|+++.||+.... +.+++......-. ++++
T Consensus 148 ~~~~~~---~~~~~tG~Pvr~~~~~-~~~~~~~~~~~~--~~~~ilV~GGS~Ga~~------ln~~v~~~~~~l~~~~~v 215 (357)
T COG0707 148 EAGVKP---ENVVVTGIPVRPEFEE-LPAAEVRKDGRL--DKKTILVTGGSQGAKA------LNDLVPEALAKLANRIQV 215 (357)
T ss_pred HCCCCC---CCEEEECCCCCHHHHC-CCHHHHHHHCCC--CCCEEEEECCCHHHHH------HHHHHHHHHHHHCCCEEE
T ss_conf 115786---6437857846366521-635544320378--9848999888242799------999999998721216699
Q ss_pred EECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHH-HHHHHCCCEEEECCCCCC---EEEEE-E
Q ss_conf 201663368899999960488850552055203578876355233115668-887627530254057741---00001-0
Q gi|254780767|r 230 SLVTVSSQENLVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAASGTVIL-ELALCGIPVVSIYKSEWI---VNFFI-F 304 (383)
Q Consensus 230 ~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd~ai~~SGTaTL-E~al~g~P~IV~Yk~~~l---t~~i~-~ 304 (383)
+..+.+...+..+..+.+... ..+.-..++...+|+.||++|+.||..|+ |++.+|+|+|.+.--+.. .+.-+ .
T Consensus 216 ~~~~G~~~~~~~~~~~~~~~~-~~v~~f~~dm~~~~~~ADLvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~ 294 (357)
T COG0707 216 IHQTGKNDLEELKSAYNELGV-VRVLPFIDDMAALLAAADLVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKF 294 (357)
T ss_pred EEECCCCHHHHHHHHHHCCCC-EEEEEHHHHHHHHHHHCCEEEECCCHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHH
T ss_conf 997697369999998720681-8997667539999986458986786649999999589889965898764418999999
Q ss_pred CCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 24676102302440784261242054898999999999844989999999999999998389999899999999986
Q gi|254780767|r 305 YIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAEIVLQV 381 (383)
Q Consensus 305 lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~~ 381 (383)
+.+....- + +-|++.|++++.+.+.+++++++..++|.++.++ ++.+.++.+.+ +.+...
T Consensus 295 l~~~gaa~---------~---i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~----~~~p~aa~~i~-~~~~~~ 354 (357)
T COG0707 295 LEKAGAAL---------V---IRQSELTPEKLAELILRLLSNPEKLKAMAENAKK----LGKPDAAERIA-DLLLAL 354 (357)
T ss_pred HHHCCCEE---------E---ECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH----HCCCCHHHHHH-HHHHHH
T ss_conf 99679769---------9---4255479999999999996598999999999987----17987899999-999998
No 11
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; InterPro: IPR006009 The murG gene of Escherichia coli encodes the N-acetylglucosaminyltransferase, UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, responsible for the final step in the formation of the lipid-linked disaccharide-pentapeptide subunit of peptidoglycan. The enzyme is peripherally associated with the inner face of the cytoplasmic membrane. Therefore, the peptidoglycan subunit is completely assembled before it traverses the cytoplasmic membrane .; GO: 0050511 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity, 0019277 UDP-N-acetylgalactosamine biosynthetic process, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=99.90 E-value=1.8e-21 Score=161.57 Aligned_cols=337 Identities=18% Similarity=0.241 Sum_probs=231.9
Q ss_pred CCC-CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEE-E--ECHHHCCEEEH-----HHHHHHHH
Q ss_conf 987-459999768214789999999999738998399997178999478806-5--04445311013-----67466459
Q gi|254780767|r 1 MNS-LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVS-L--FDFSELSVIGI-----MQVVRHLP 71 (383)
Q Consensus 1 m~~-mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~-~--~~~~~l~v~G~-----~evl~~~~ 71 (383)
|++ |||++.+|.+.|=.=|=.+.++|+++ ++++++.-+|..+-.+..+.. - ..+.++++-|+ ..-++...
T Consensus 2 ~~~~~~~~~~gGGTGG~fPAlA~a~~l~~~-~~~~~v~~lG~~~g~e~~lv~~~~~~~~~~i~~~gl~~~~~~~~~~~~~ 80 (368)
T TIGR01133 2 MNKMKKVALAGGGTGGIFPALAVAEELIKR-GPEVEVVWLGTKRGLEERLVPSKEGIEFLTIPVGGLRRKGSKKLLKLPL 80 (368)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHH
T ss_conf 988228999727830268999999999974-8936999850677500003432157417777401003655101467889
Q ss_pred -HHHHHHHHHHHHCCCCCCCEEEEECHHHHH-HH--HHHHHHHHCCC-CCCEEEECCCCCCCCCCCH-HHHHHHHHHHCC
Q ss_conf -999999999861001288868985117765-79--99986630134-6311110022110036635-579999986401
Q gi|254780767|r 72 -QFIFRINQTVELIVSSKPDVLLIVDNPDFT-HR--VAKRVRKKMPN-LPIINYVCPSVWAWREGRA-RKMCAYINQVIS 145 (383)
Q Consensus 72 -~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFn-l~--lak~lkk~~~~-ipvi~yv~PqvWAWr~~R~-k~~~~~~d~~~~ 145 (383)
++.+...+..+.|++++||+||+ +-||- ++ +|-.+ +| ||++.= | =-.+|-+ |.+.++.|++++
T Consensus 81 ~~~~~~~~~a~~~l~~~~p~~v~G--~GGY~s~P~~~AA~l----~g~iP~~~E---Q--N~~pG~~Nk~ls~~A~~V~~ 149 (368)
T TIGR01133 81 LKLLKAVLQARRILKKFKPDVVVG--FGGYVSGPAGLAAKL----LGRIPLILE---Q--NAVPGLTNKLLSRFAKRVLV 149 (368)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEE--CCCHHHHHHHHHHHH----CCCCCEEEE---E--CCHHHHHHHHHHHHHCEEEE
T ss_conf 999999999999986008747987--473678999999876----679948986---1--54125788887887443111
Q ss_pred CCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCH-HHHCCCHHHHHHHHHHCC
Q ss_conf 5677422320025531476388211221001355888976187655650599853874301-230511189998764027
Q gi|254780767|r 146 ILPFEKEVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEI-YKILPFFESAVASLVKRN 224 (383)
Q Consensus 146 ifpFE~~~f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI-~~~lP~~l~~~~~l~~~~ 224 (383)
-||-=.++|+. .-++.++|+|...++...+.. ..+.+....+++.+|+++.||..+++ ++.+| +++..|.++.
T Consensus 150 ~f~~~~~~~~~--~~~~~~~g~pvr~~~~~~~~~-~~~~~~~~~~~~~~ilv~GGSQGA~~lN~~vp---~~~~~L~~~~ 223 (368)
T TIGR01133 150 SFPGAKKFFPA--AEKVVVVGNPVREEIRSLPAA-RARKRFKLRPGKLRILVLGGSQGAKILNELVP---KALAKLAEKG 223 (368)
T ss_pred ECHHHHCCCCC--CCCEEEECCHHHHHHHCCCCH-HHHHHHCCCCCCCEEEEECCCHHHHHHHHHHH---HHHHHHHHCC
T ss_conf 05133226766--675687014134543037825-68886216899827999627376899999999---9998864016
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHCC-CCCEEEEECC--CCHHHHHHHHHHHCCCHHHHH-HHHHHCCCEEEE-CCCCC--
Q ss_conf 3512620166336889999996048-8850552055--203578876355233115668-887627530254-05774--
Q gi|254780767|r 225 PFFRFSLVTVSSQENLVRCIVSKWD-ISPEIIIDKE--QKKQVFMTCNAAMAASGTVIL-ELALCGIPVVSI-YKSEW-- 297 (383)
Q Consensus 225 ~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~i~~~~~--~~~~~l~~sd~ai~~SGTaTL-E~al~g~P~IV~-Yk~~~-- 297 (383)
. +..++.......+.....+.+.+ ....+....+ +.-++|+.||++|+.||+.|+ |++..|+|+|.+ |.-.-
T Consensus 224 ~-~~~~~~~g~~~~~~~~~~y~~~~l~~~~~~~f~~~~dm~~~y~~ADLvIsRAGA~T~~El~a~G~PaIliPyP~a~~r 302 (368)
T TIGR01133 224 L-ILVIIQGGKGDLEKVKNVYSELGLVAAKITPFIDNEDMAAAYAAADLVISRAGASTVAELAAAGVPAILIPYPYAAKR 302 (368)
T ss_pred C-EEEEEECCHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCH
T ss_conf 5-258887663779999998521371022210377875799999874040023337899999971777376258754681
Q ss_pred -CEEEEEE-CCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf -1000010-24676102302440784261242054898999999999844989999999999999998389999899
Q gi|254780767|r 298 -IVNFFIF-YIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGH 372 (383)
Q Consensus 298 -lt~~i~~-lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~ 372 (383)
=.+.-+. +.+... ..+ +-|++.++++|...+..++.|+..+++|.++ .++++.++++.+
T Consensus 303 ~~Q~~NA~~l~~~ga---------g~~---~~q~~~~~e~l~~~~~~l~~~~~~~~~~~~~----~~~~~~~~a~~~ 363 (368)
T TIGR01133 303 DDQYYNAKFLEDAGA---------GIV---IEQKELLTEKLVSALLKLLKDPARLEEMAEA----ARKLAKPDAAKR 363 (368)
T ss_pred HHHHHHHHHHHHCCC---------CEE---EHHHCCCHHHHHHHHHHHCCHHHHHHHHHHH----HHHHHCCCHHHH
T ss_conf 789999999973446---------546---4022047689999987416108999999999----998615727799
No 12
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.88 E-value=1.4e-19 Score=149.26 Aligned_cols=338 Identities=14% Similarity=0.189 Sum_probs=208.1
Q ss_pred CCEEEEEECCCC-HHHHHH-HHHHHHHHHCCCCEEE---EEECCHHHHHCCCEEEECHHHCCEE-EHHHH---------H
Q ss_conf 745999976821-478999-9999999738998399---9971789994788065044453110-13674---------6
Q gi|254780767|r 3 SLKIAVIAGEIS-GDLLAG-DLIKSLKEMVSYPINL---VGVGGPSLQKEGLVSLFDFSELSVI-GIMQV---------V 67 (383)
Q Consensus 3 ~mki~i~aGE~S-GD~~~a-~li~~Lk~~~~~~~~~---~giGG~~m~~~G~~~~~~~~~l~v~-G~~ev---------l 67 (383)
+.||+|.++... |+..+| .|.+++++....++.+ ++..++.+........ +..++.. .++.. -
T Consensus 4 ~kKVLILtas~G~GH~~AA~AL~e~l~~~~~~~v~v~D~~~~~~p~~~~~~~~~Y--l~~~~~~p~l~~~~Y~~~~~~~~ 81 (388)
T PRK13609 4 NPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITDITKYLY--LKSYTIGKELYRLFYYGVEKIYD 81 (388)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9979999788882789999999999983599819998514302704888998888--88855358899999964322221
Q ss_pred HHHHHH--HHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEE----CCCCCCCCCCCHHHHHHHHH
Q ss_conf 645999--999999986100128886898511776579999866301346311110----02211003663557999998
Q gi|254780767|r 68 RHLPQF--IFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYV----CPSVWAWREGRARKMCAYIN 141 (383)
Q Consensus 68 ~~~~~~--~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv----~PqvWAWr~~R~k~~~~~~d 141 (383)
+....+ ....+++.+.|.+++||+||.. +|-+.+... .++....+|++-.| +=+.|.+ ..+|
T Consensus 82 ~~~~~~~~~~~~~~l~~li~~~kPDvII~T-~P~~~l~~l--k~~~~~~iP~~tViTD~~~H~~Wi~---------~~~D 149 (388)
T PRK13609 82 KKIASWYANFGRKRLKLLLQAEKPDIVINT-FPIIAVPEL--KKQTGISIPVYNVLTDFCVHKIWIH---------REVD 149 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCHHHHHHH--HHHCCCCCCEEEEECCCCCHHHHCC---------CCCC
T ss_conf 567899999979999999998295999988-878999999--9845999988999478520464557---------8999
Q ss_pred HHCCCCCCCHHHHHCCCCC---CEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHH
Q ss_conf 6401567742232002553---1476388211221001355888976187655650599853874301230511189998
Q gi|254780767|r 142 QVISILPFEKEVMQRLGGP---PTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVA 218 (383)
Q Consensus 142 ~~~~ifpFE~~~f~k~~~~---~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~ 218 (383)
+.+|--+.-++...+. |+ ++...|-|+...+....++...++++|++++.++++++.||... +..+.+.+.
T Consensus 150 ~y~Vase~~k~~l~~~-Gv~~~kI~vtGiPVr~~F~~~~~k~~~r~~lgL~~d~~~vLimgGg~G~-----~g~i~~l~~ 223 (388)
T PRK13609 150 RYFVATDHVKEVMVDI-GVPAEQIVETGIPIRSSFELKINPDIIYNKYQLCKNKKILLIVAGAHGV-----LGNVKELCQ 223 (388)
T ss_pred EEEECCHHHHHHHHHH-CCCHHHEEEECCCCCHHHCCCCCHHHHHHHHCCCCCCCEEEEECCHHHH-----HHHHHHHHH
T ss_conf 7993989999999980-9988899988984387872758878999982899878479997660121-----147999999
Q ss_pred HHHHCCCCCEEEECCCCCH--HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHH-HHHHHCCCEEEECCC
Q ss_conf 7640273512620166336--8899999960488850552055203578876355233115668-887627530254057
Q gi|254780767|r 219 SLVKRNPFFRFSLVTVSSQ--ENLVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAASGTVIL-ELALCGIPVVSIYKS 295 (383)
Q Consensus 219 ~l~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd~ai~~SGTaTL-E~al~g~P~IV~Yk~ 295 (383)
.|.. .+++++++.+..+. .+.++......+....+.-..++..++|.+||+.|+.+|..|+ |+..+|+|+|+..-.
T Consensus 224 ~L~~-~~~~qiiVVcGrN~~L~~~L~~~~~~~~~~v~vlGf~~~~~~~~~~~d~~i~k~Gg~t~~E~~~~~~P~i~~~~~ 302 (388)
T PRK13609 224 SFMS-VPDLQVVVVCGKNEALKQDLVGLQETNPDALKVFGYVENIDELFRVTSCMITKPGGITLSEAAALQVPVILYKPV 302 (388)
T ss_pred HHHC-CCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHCCEEEECCCHHHHHHHHHHCCCEEECCCC
T ss_conf 9745-899249999089989999999887507994699504520999998575999578645899999948998970689
Q ss_pred CCCEEEEEE-CCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 741000010-2467610230244078426124205489899999999984498999999999999999838999989999
Q gi|254780767|r 296 EWIVNFFIF-YIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMA 374 (383)
Q Consensus 296 ~~lt~~i~~-lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~A 374 (383)
..-...-.+ +++.- . .++ + -+++++.+.+..+++|+++.++|.++. .+++.+.++.++|
T Consensus 303 pgqe~~N~~~~~~~g-~---------~~~---~---~~~~~~~~~~~~ll~~~~~l~~m~~~~----~~~~~p~aa~~I~ 362 (388)
T PRK13609 303 PGQENENAMYFERKG-A---------AVV---I---RDDSEVFAKTEALLQDDMKLLQMKEAM----KSIYLPEPADHIV 362 (388)
T ss_pred CCHHHHHHHHHHHCC-C---------EEE---E---CCHHHHHHHHHHHHCCHHHHHHHHHHH----HHCCCCCHHHHHH
T ss_conf 961677799999789-8---------799---7---999999999999976999999999999----8627985899999
Q ss_pred HHHHHHH
Q ss_conf 9999986
Q gi|254780767|r 375 AEIVLQV 381 (383)
Q Consensus 375 A~~I~~~ 381 (383)
..++-+.
T Consensus 363 ~~il~~~ 369 (388)
T PRK13609 363 DTILAEN 369 (388)
T ss_pred HHHHHHH
T ss_conf 9999863
No 13
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.87 E-value=9e-19 Score=143.84 Aligned_cols=334 Identities=13% Similarity=0.188 Sum_probs=213.3
Q ss_pred CCEEEEEECCCC-HHHHHH-HHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHH-----
Q ss_conf 745999976821-478999-9999999738998399997178999478806504445311013674664599999-----
Q gi|254780767|r 3 SLKIAVIAGEIS-GDLLAG-DLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIF----- 75 (383)
Q Consensus 3 ~mki~i~aGE~S-GD~~~a-~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~----- 75 (383)
+.||+|.++... |+..|| .|.+++++....+.++.-. +.+.... .. +..+..-+....+++.|.+++
T Consensus 5 ~KKVLILtas~G~GH~~AA~AL~~~l~~~~~~~~~v~~~--D~~~~~~-p~---~~~~~~~~Yl~~~k~~p~ly~~~Y~~ 78 (391)
T PRK13608 5 NKKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEH--DLFMEAH-PI---LTSICKKWYINSFKYFRNMYKGFYYS 78 (391)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE--CHHHHCC-CH---HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 887999968988379999999999998509996699991--3787648-41---88889999999999999999989854
Q ss_pred -------------HHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHH-CCCCCCEEEEC----CCCCCCCCCCHHHHH
Q ss_conf -------------999998610012888689851177657999986630-13463111100----221100366355799
Q gi|254780767|r 76 -------------RINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKK-MPNLPIINYVC----PSVWAWREGRARKMC 137 (383)
Q Consensus 76 -------------~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~-~~~ipvi~yv~----PqvWAWr~~R~k~~~ 137 (383)
..+++.+.+.+++||++|+. +|- .+.-.+|++ +.++|++-.+. =..|..
T Consensus 79 ~~~~~~~~~~~~~~~~kl~~~L~~~kPDvII~T-~P~---~~~s~lk~~~~~~iP~~tViTD~~~H~~W~~--------- 145 (391)
T PRK13608 79 RPDKLDKCFYKYYGLNKLINLLIKEKPDLILLT-FPT---PVMSVLTEQFNINIPVATVMTDYRLHKNWIT--------- 145 (391)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC-CHH---HHHHHHHHHCCCCCCEEEEECCHHHHHHHCC---------
T ss_conf 840677999999889999999998492999999-828---9999999824999988999587133230368---------
Q ss_pred HHHHHHCCCCCCCHHHHHCCCCCC---EEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHH
Q ss_conf 999864015677422320025531---47638821122100135588897618765565059985387430123051118
Q gi|254780767|r 138 AYINQVISILPFEKEVMQRLGGPP---TTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFE 214 (383)
Q Consensus 138 ~~~d~~~~ifpFE~~~f~k~~~~~---~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l 214 (383)
..+|+.+|--+.-.+.+.+. |++ +..+|=|+...+....++.+.++++++++++++|+++.||-.- .+.+.
T Consensus 146 ~~~D~y~Va~~~~~~~l~~~-Gi~~~kI~vtGIPV~~~F~~~~~~~~~~~~~~l~~~~~~iLv~gG~~G~-----~~~~~ 219 (391)
T PRK13608 146 PYSTRYYVATKETKQDFIDV-GIDPSTVKVTGIPIDNKFETPINQKQWLIDNNLDPDKQTILMSAGAFGV-----SKGFD 219 (391)
T ss_pred CCCCEEEECCHHHHHHHHHC-CCCHHHEEEEEEECCHHHCCCCCHHHHHHHCCCCCCCCEEEEECCCCCH-----HHHHH
T ss_conf 99997996999999999984-9997688998343586773755678999971899777689996886310-----24699
Q ss_pred HHHHHHHHCCCCCEEEECCCCCHH--HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHH-HHHHHCCCEEE
Q ss_conf 999876402735126201663368--899999960488850552055203578876355233115668-88762753025
Q gi|254780767|r 215 SAVASLVKRNPFFRFSLVTVSSQE--NLVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAASGTVIL-ELALCGIPVVS 291 (383)
Q Consensus 215 ~~~~~l~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd~ai~~SGTaTL-E~al~g~P~IV 291 (383)
.++..+....++.++++.+..+.+ ..++......+ +..+.=..++..++|.+||+.|+.+|-.|. |+...++||++
T Consensus 220 ~~i~~ll~~~~~~qivvvcGrN~~L~~~L~~~~~~~~-~v~vlG~t~~m~~lM~asDllITKpGGlT~sEAla~~lPmii 298 (391)
T PRK13608 220 TMITDILAKSANAQVVMICGKSKELKRSLTAKFKSNE-NVLILGYTKHMNEWMASSQLMITKPGGITITEGFARCIPMIF 298 (391)
T ss_pred HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCC-CEEEECCCCCHHHHHHHCCEEEECCCHHHHHHHHHHCCCEEE
T ss_conf 9999997159996599990899999999997624599-769970705199999865299967866799999995899897
Q ss_pred ECCCCCCEEEEEE-CCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 4057741000010-246761023024407842612420548989999999998449899999999999999983899998
Q gi|254780767|r 292 IYKSEWIVNFFIF-YIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPA 370 (383)
Q Consensus 292 ~Yk~~~lt~~i~~-lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a 370 (383)
.-....-...-.. +++.-..-. --+++++.+.+..+++|++..++|.+++++ ++.+.++
T Consensus 299 ~~piPGQEe~Na~~l~~~G~a~~----------------~~~~~~~~~~v~~l~~~~~~l~~m~~~~~~----~~~p~a~ 358 (391)
T PRK13608 299 LNPAPGQELENALYFEEKGFGKI----------------ADTPEEAIKIVASLTNGNEQLTNMISTMEQ----DKIKYAT 358 (391)
T ss_pred CCCCCCCHHHHHHHHHHCCCEEE----------------ECCHHHHHHHHHHHHCCHHHHHHHHHHHHH----HCCCCHH
T ss_conf 57999744667999996897688----------------599999999999985599999999999997----1799629
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999998619
Q gi|254780767|r 371 GHMAAEIVLQVLG 383 (383)
Q Consensus 371 ~~~AA~~I~~~Lg 383 (383)
.+++ +-+++++|
T Consensus 359 ~~I~-~~~~~l~~ 370 (391)
T PRK13608 359 QTIC-RDLLDLIG 370 (391)
T ss_pred HHHH-HHHHHHHH
T ss_conf 9999-99999872
No 14
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.73 E-value=2.4e-16 Score=127.78 Aligned_cols=345 Identities=17% Similarity=0.171 Sum_probs=197.5
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEE----EC-CHHHHHCCCEEEECHHHCCEEEHH-----H----HH-
Q ss_conf 745999976821478999999999973899839999----71-789994788065044453110136-----7----46-
Q gi|254780767|r 3 SLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVG----VG-GPSLQKEGLVSLFDFSELSVIGIM-----Q----VV- 67 (383)
Q Consensus 3 ~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~g----iG-G~~m~~~G~~~~~~~~~l~v~G~~-----e----vl- 67 (383)
.|||+++.-.+.-|+.|+.++++|+++.+|+ +++. || |..-+..++..+-+..++..-||. + +-
T Consensus 6 ~~kiLllSNGHgEDlia~~i~qal~rra~p~-eila~LPLVGeG~aYq~l~i~ligpv~~mPSGGf~y~~~~~l~rDvrg 84 (412)
T COG4370 6 APKILLLSNGHGEDLIAVAIAQALRRRAPPD-EILAALPLVGEGGAYQNLNIELIGPVLTMPSGGFIYMDLRNLWRDVRG 84 (412)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHCCCC-CEEECCCCCCCCHHHCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 3104786068527789999999999637986-604216422574121256850000354478888234559999999752
Q ss_pred ----HHHHHHHHHHHHHHHHCCC--CCCCEEEEECHHHHHHHHHHHH-HHH-CCCC---CCEEEECCCCCCCCCCCHH--
Q ss_conf ----6459999999999861001--2888689851177657999986-630-1346---3111100221100366355--
Q gi|254780767|r 68 ----RHLPQFIFRINQTVELIVS--SKPDVLLIVDNPDFTHRVAKRV-RKK-MPNL---PIINYVCPSVWAWREGRAR-- 134 (383)
Q Consensus 68 ----~~~~~~~~~~~~~~~~i~~--~~Pd~vi~iD~pgFnl~lak~l-kk~-~~~i---pvi~yv~PqvWAWr~~R~k-- 134 (383)
+.+..+.-..++.-. .++ .+-|++-.=|- ..+|... -.. ..-. +.-|||.--+-+|=+.-..
T Consensus 85 GLvqlT~~Qi~alrkq~~q-~~~~g~~~~ilAvGdi----vpla~a~lg~~~y~~v~~a~seyyvr~~~g~~l~~t~a~r 159 (412)
T COG4370 85 GLVQLTLGQILALRKQGPQ-LERVGVVGDILAVGDI----VPLAFAILGGLAYAFVGTAKSEYYVRVEYGLGLPLTGALR 159 (412)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHHCCCCCCEEEECCH----HHHHHHHHCCCCCCCEEECCCCEEEEECCCCCCCCCHHHH
T ss_conf 1788529999999874316-5533555535885112----5889986167764303321440566201234776400445
Q ss_pred ------------HHHHHHHHHCCCCC---CCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEE
Q ss_conf ------------79999986401567---742232002553147638821122100135588897618765565059985
Q gi|254780767|r 135 ------------KMCAYINQVISILP---FEKEVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLP 199 (383)
Q Consensus 135 ------------~~~~~~d~~~~ifp---FE~~~f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llP 199 (383)
.+-. -.+....|| +-.+-..+. |+++.|||+|++|-....+..... +-...++|+|||
T Consensus 160 wen~lg~~y~pwwlm~-~rrc~~vf~rD~~Taq~L~~r-gvna~~vGnpmmD~L~p~~~~~q~-----l~~g~~viaLLP 232 (412)
T COG4370 160 WENALGAVYMPWWLML-RRRCWAVFPRDALTAQHLANR-GVNAAYVGNPMMDGLPPPERDPQL-----LLTGVPVIALLP 232 (412)
T ss_pred HHHHCCCCHHHHHHHH-CCCCEEEECCCCCCHHHHHHC-CCCHHHCCCHHHCCCCCCCCCCHH-----HCCCCCEEEECC
T ss_conf 5430254010589871-552025505553157889746-976665067143069976678134-----226872588668
Q ss_pred CCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHH-HH--HHHC--------CCCCEEEEECCCCHHHHHHH
Q ss_conf 3874301230511189998764027351262016633688999-99--9604--------88850552055203578876
Q gi|254780767|r 200 GSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVR-CI--VSKW--------DISPEIIIDKEQKKQVFMTC 268 (383)
Q Consensus 200 GSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~-~~--~~~~--------~~~~~i~~~~~~~~~~l~~s 268 (383)
|||..|...++++++.++.-+......+.|.-..+++..-... .. -..| +.+..+........++++++
T Consensus 233 GsR~pea~~nl~~il~slcal~~~~a~vvfw~ai~~~lpl~~l~~l~e~~gWq~~ad~~~kdnc~l~lsqqsfadiLH~a 312 (412)
T COG4370 233 GSRVPEAQTNLAVILGSLCALPAMFALVVFWAAIAPELPLLLLWTLEERQGWQPLADRFGKDNCSLWLSQQSFADILHAA 312 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCEEEEEEHHHHHHHHHHH
T ss_conf 98881787639999999864277778889876037679878999999853862256664667638997588899999889
Q ss_pred HHHHCCCHHHHHHHHHHCCCEEEECCCCCC-EEEEE----ECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHH
Q ss_conf 355233115668887627530254057741-00001----0246761023024407842612420548989999999998
Q gi|254780767|r 269 NAAMAASGTVILELALCGIPVVSIYKSEWI-VNFFI----FYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERL 343 (383)
Q Consensus 269 d~ai~~SGTaTLE~al~g~P~IV~Yk~~~l-t~~i~----~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~l 343 (383)
|+||.+.||+|-+++-+|+|.|-+---.+- ++.|+ +++-. ||. +.+ + +++.=.....++
T Consensus 313 daalgmAGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~---slt--lv~---------~--~aq~a~~~~q~l 376 (412)
T COG4370 313 DAALGMAGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGA---SLT--LVR---------P--EAQAAAQAVQEL 376 (412)
T ss_pred HHHHHHCCCHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHCC---EEE--ECC---------C--CHHHHHHHHHHH
T ss_conf 999875441677763369862436898987581799999998525---345--417---------7--545689999998
Q ss_pred HCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 4498999999999999999838999989999999998
Q gi|254780767|r 344 SQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAEIVLQ 380 (383)
Q Consensus 344 l~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~ 380 (383)
+.|+++.+.++. +-.+++|++|++.++|+ ...+
T Consensus 377 l~dp~r~~air~---nGqrRiGqaGaa~rIAe-~l~e 409 (412)
T COG4370 377 LGDPQRLTAIRH---NGQRRIGQAGAARRIAE-ELGE 409 (412)
T ss_pred HCCHHHHHHHHH---CCHHHCCCCCHHHHHHH-HHHH
T ss_conf 448177788875---34433167623789999-9987
No 15
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.71 E-value=1.6e-14 Score=115.71 Aligned_cols=329 Identities=19% Similarity=0.235 Sum_probs=196.4
Q ss_pred EEEEEECC----CCH-HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHH-HHHHHHHHHHHHHH
Q ss_conf 59999768----214-7899999999997389983999971789994788065044453110136-74664599999999
Q gi|254780767|r 5 KIAVIAGE----ISG-DLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIM-QVVRHLPQFIFRIN 78 (383)
Q Consensus 5 ki~i~aGE----~SG-D~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~-evl~~~~~~~~~~~ 78 (383)
||.+++.+ .+| ..+..+|.++|.++ +.++.+..-.-+.-... .+.......... ..............
T Consensus 1 kIaivt~~y~P~~GG~~~~~~~La~~L~~~-GheV~Vit~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKR-GHEVYVVAPSYPGAPEE-----EEVVVVRPFRVPTFKYPDFRLPLPIPR 74 (374)
T ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCC-----CCCCEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 989995898999980999999999999977-99899997279887754-----357628984367776521345555799
Q ss_pred HHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEE---CCCCC----------CCC--CCCHHHHHHHHHHH
Q ss_conf 9986100128886898511776579999866301346311110---02211----------003--66355799999864
Q gi|254780767|r 79 QTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYV---CPSVW----------AWR--EGRARKMCAYINQV 143 (383)
Q Consensus 79 ~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv---~PqvW----------AWr--~~R~k~~~~~~d~~ 143 (383)
.+...+++.+||+|.. -+|-+--.++.++.++ .++|+++-. .++.+ .|. .+-.+.+-+.+|.+
T Consensus 75 ~~~~~~~~~~~DvIh~-~~~~~~~~~a~~~~~~-~~ip~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 152 (374)
T cd03817 75 ALIIILKELGPDIVHT-HTPFSLGLLGLRVARK-LGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAV 152 (374)
T ss_pred HHHHHHHHCCCCEEEE-CCHHHHHHHHHHHHHH-CCCCEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEE
T ss_conf 9999998669999998-7825889999999997-4995999955777998876311101356789999999999859999
Q ss_pred CCCCCCCHHHHHCCCCC--CEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHH
Q ss_conf 01567742232002553--1476388211221001355888976187655650599853874301230511189998764
Q gi|254780767|r 144 ISILPFEKEVMQRLGGP--PTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLV 221 (383)
Q Consensus 144 ~~ifpFE~~~f~k~~~~--~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~ 221 (383)
+|.-++..+++.++ +. ++..+-|++-...-........+++.+..+++.+ .++.| |-.+ .+.+..+++++.++.
T Consensus 153 i~~S~~~~~~l~~~-~~~~~i~vI~ngvd~~~f~~~~~~~~~~~~~~~~~~~~-i~~~G-rl~~-~Kg~~~li~a~~~l~ 228 (374)
T cd03817 153 IAPSEKIADLLREY-GVKRPIEVIPTGIDLDRFEPVDGDDERRKLGIPEDEPV-LLYVG-RLAK-EKNIDFLIRAFARLL 228 (374)
T ss_pred EECHHHHHHHHHHC-CCCCCEEEECCCCCHHHCCCCCHHHHHHHHCCCCCCEE-EEEEE-CCCC-CCHHHHHHHHHHHHH
T ss_conf 97809999999970-89998899869606664398641789998189999849-99970-5754-210789999999887
Q ss_pred HCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEE----CCCCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEE
Q ss_conf 027351262016633688999999604888505520----552035788763552331-----15668887627530254
Q gi|254780767|r 222 KRNPFFRFSLVTVSSQENLVRCIVSKWDISPEIIID----KEQKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSI 292 (383)
Q Consensus 222 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~ 292 (383)
++.+++++++......++.++......++..+|... .++..++++.||+.+..| |.+.+|++++|+|.|+
T Consensus 229 ~~~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~f~G~v~~~~~~~~l~~adi~v~pS~~E~fg~~~~EAma~G~PvI~- 307 (374)
T cd03817 229 KEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVA- 307 (374)
T ss_pred HCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEE-
T ss_conf 4189848999877447655678888742466244358875667787644247544777665775999999981998999-
Q ss_pred CCCCCCEEEEEECCCCCCEEEEHHHCCC---CCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 0577410000102467610230244078---42612420548989999999998449899999999999999983899
Q gi|254780767|r 293 YKSEWIVNFFIFYIKTWTCALPNLIVDY---PLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTK 367 (383)
Q Consensus 293 Yk~~~lt~~i~~lik~~~i~LpNii~~~---~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~ 367 (383)
...+ +++.++-+. -++|+ +.+.+++++..+++|++.|++|-++.++..++...+
T Consensus 308 s~~g---------------g~~e~i~~g~~G~l~~~------~~~~l~~~i~~l~~~~~~~~~~~~~a~~~a~~f~~~ 364 (374)
T cd03817 308 VDAP---------------GLPDLVADGENGFLFPP------GDEALAEALLRLLQDPELRRRLSKNAEESAEKFSFA 364 (374)
T ss_pred ECCC---------------CHHHHHHCCCEEEEECC------CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHH
T ss_conf 1799---------------75999647985999697------869999999999759999999999999999978999
No 16
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.69 E-value=7e-14 Score=111.55 Aligned_cols=321 Identities=18% Similarity=0.184 Sum_probs=189.0
Q ss_pred EEEEEECCCC--HHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5999976821--47899999999997389983999971789994788065044453110136746645999999999986
Q gi|254780767|r 5 KIAVIAGEIS--GDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVE 82 (383)
Q Consensus 5 ki~i~aGE~S--GD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~ 82 (383)
||.+++..-. |+.+--+++++|.++ +.++.++...++.- ...+..+-....-......-.........+.+
T Consensus 1 ki~~v~~~~P~~~etfv~~la~~L~~~-GHeV~v~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 73 (355)
T cd03799 1 KIAYLVKEFPRLSETFILREILALEAA-GHEVEIFSLRPPED------TLVHPEDRAELARTRYLARSLALLAQALVLAR 73 (355)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHC-CCEEEEEECCCCCC------CCCCCCCCCEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 989998989899617999999999967-98499995348877------73064302121552154777999999999999
Q ss_pred HCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEE-CCCCCCCCC-CCHHHHHHHHHHHCCCCCCCHHHHHCCCCC
Q ss_conf 100128886898511776579999866301346311110-022110036-635579999986401567742232002553
Q gi|254780767|r 83 LIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYV-CPSVWAWRE-GRARKMCAYINQVISILPFEKEVMQRLGGP 160 (383)
Q Consensus 83 ~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv-~PqvWAWr~-~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~ 160 (383)
.+++++||+|-.= ++-....++..+++ ..++|+++-+ .+.+|--.. ++.+..-+..|++++.=.+..+...+..++
T Consensus 74 ~i~~~~~DiIH~H-~~~~~~~~~~~~~~-~~~ip~v~t~Hg~d~~~~~~~~~l~~~~~~ad~ii~vS~~~~~~l~~~~~~ 151 (355)
T cd03799 74 ELRRLGIDHIHAH-FGTTPATVAMLASR-LGGIPYSFTAHGKDIFRSPDAIDLDEKLARADFVVAISEYNRQQLIRLLGC 151 (355)
T ss_pred HHHHCCCCEEEEC-CCCHHHHHHHHHHH-HCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHHHCCC
T ss_conf 9977799899976-88337999999999-749999999816765567368999999983999999899999999986099
Q ss_pred ---CEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCH
Q ss_conf ---14763882112210013558889761876556505998538743012305111899987640273512620166336
Q gi|254780767|r 161 ---PTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQ 237 (383)
Q Consensus 161 ---~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~ 237 (383)
++..+.|.+ |. ..+........+++...++.| |-.+ .+.++.+++++.++.++.|++++++......
T Consensus 152 ~~~ki~vi~ngv-d~-------~~f~~~~~~~~~~~~~il~vG-rl~~-~Kg~~~li~A~~~l~~~~~~~~l~ivG~G~~ 221 (355)
T cd03799 152 DPDKIHVVHCGV-DL-------ERFPPRPPPPPGEPLRILSVG-RLVE-KKGLDYLLEALALLKDRGIDFRLDIVGDGPL 221 (355)
T ss_pred CHHHEEEECCCC-CH-------HHCCCCCCCCCCCCEEEEEEE-CCCH-HCCCHHHHHHHHHHHHHCCCEEEEEECCCHH
T ss_conf 914689989964-88-------887998755778986999981-5802-1190999999999986499979999667604
Q ss_pred HHHHHHHHHHCCCCCEEEEE----CCCCHHHHHHHHHHHCCC-----------HHHHHHHHHHCCCEEEECCCCCCEEEE
Q ss_conf 88999999604888505520----552035788763552331-----------156688876275302540577410000
Q gi|254780767|r 238 ENLVRCIVSKWDISPEIIID----KEQKKQVFMTCNAAMAAS-----------GTVILELALCGIPVVSIYKSEWIVNFF 302 (383)
Q Consensus 238 ~~~~~~~~~~~~~~~~i~~~----~~~~~~~l~~sd~ai~~S-----------GTaTLE~al~g~P~IV~Yk~~~lt~~i 302 (383)
.+.++...++.++...|... .++..+.++.||+.+.+| |.+.||++.+|+|. |+.+.+.+
T Consensus 222 ~~~l~~~~~~l~l~~~V~f~G~v~~~~l~~~~~~adv~v~pS~~~~~~~~Eg~p~~~lEAma~G~Pv-Vas~~~g~---- 296 (355)
T cd03799 222 RDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPV-ISTDVSGI---- 296 (355)
T ss_pred HHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHHHCCCCE-EECCCCCC----
T ss_conf 8899999997499855076444464767999974989998452335677668777999999669989-99179985----
Q ss_pred EECCCCCCEEEEHHHCCCC---CCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHC
Q ss_conf 1024676102302440784---26124205489899999999984498999999999999-999838
Q gi|254780767|r 303 IFYIKTWTCALPNLIVDYP---LVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFEN-LWDRMN 365 (383)
Q Consensus 303 ~~lik~~~i~LpNii~~~~---ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~-~~~~Lg 365 (383)
+-++.+.+ ++| .-+++.+++++..+++|++.|++|-++.++ +.++..
T Consensus 297 -----------~e~v~~g~~G~l~~-----~~d~~~la~~i~~ll~d~~~~~~~~~~ar~~v~~~fs 347 (355)
T cd03799 297 -----------PELVEDGETGLLVP-----PGDPEALADAIERLLDDPELRREMGEAGRARVEEEFD 347 (355)
T ss_pred -----------HHHHCCCCCEEEEC-----CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_conf -----------76622898589979-----9999999999999987999999999999999998699
No 17
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.69 E-value=6.9e-14 Score=111.61 Aligned_cols=333 Identities=15% Similarity=0.178 Sum_probs=196.4
Q ss_pred CEEEEEECCC---CHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHH
Q ss_conf 4599997682---147899999999997389983999971789-994788065044453110136746645999999999
Q gi|254780767|r 4 LKIAVIAGEI---SGDLLAGDLIKSLKEMVSYPINLVGVGGPS-LQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQ 79 (383)
Q Consensus 4 mki~i~aGE~---SGD~~~a~li~~Lk~~~~~~~~~~giGG~~-m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~ 79 (383)
|||.++| .+ ....+...|.++|.++ +.++.+...+.+. +....-...++--......+ .+.-+.......+
T Consensus 1 MkI~i~~-~P~~GG~e~~v~~La~~L~~~-GHeV~vit~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~ 75 (371)
T cd04962 1 MKIGIVC-YPTYGGSGVVATELGKALARR-GHEVHFITSSRPFRLDEYSPNIFFHEVEVPQYPL---FQYPPYDLALASK 75 (371)
T ss_pred CEEEEEC-CCCCCCHHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCC---CCCCCCHHHHHHH
T ss_conf 9799989-999986999999999999975-9999999568987655568973799846877653---4467213789999
Q ss_pred HHHHCCCCCCCEEEEE-CHH-HHHHHHHHHHHHHCCCCCCEEEEC-CCCCCCCCCCH-----HHHHHHHHHHCCCCCCCH
Q ss_conf 9861001288868985-117-765799998663013463111100-22110036635-----579999986401567742
Q gi|254780767|r 80 TVELIVSSKPDVLLIV-DNP-DFTHRVAKRVRKKMPNLPIINYVC-PSVWAWREGRA-----RKMCAYINQVISILPFEK 151 (383)
Q Consensus 80 ~~~~i~~~~Pd~vi~i-D~p-gFnl~lak~lkk~~~~ipvi~yv~-PqvWAWr~~R~-----k~~~~~~d~~~~ifpFE~ 151 (383)
+.+.++.++||+|-.= ..| .+..-++..+.+ ..++|+++.+- ..+|.++..+. +...+..|.+.++-++..
T Consensus 76 l~~~~~~~~~DvvH~h~~~p~~~~~~l~~~~~~-~~~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~a~~vi~~S~~~~ 154 (371)
T cd04962 76 IAEVAKRYKLDLLHVHYAVPHAVAAYLAREILG-KKDLPVVTTLHGTDITLVGQDPSFQPATRFSIEKSDGVTAVSESLR 154 (371)
T ss_pred HHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHCCCHHHHHHHHHHHHHCCEEEECCHHHH
T ss_conf 999999739988997255426799999999864-4799789993798556421474566899999975898998999999
Q ss_pred HHHHCCCC--CCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEE
Q ss_conf 23200255--3147638821122100135588897618765565059985387430123051118999876402735126
Q gi|254780767|r 152 EVMQRLGG--PPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRF 229 (383)
Q Consensus 152 ~~f~k~~~--~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~ 229 (383)
+...+..+ -+...+.|++-...-........+...+...+.++|+.+ | |-.. .+.++.+++++..+.+..+ .++
T Consensus 155 ~~~~~~~~~~~~i~vI~Ngvd~~~f~~~~~~~~~~~~~~~~~~~~i~~v-g-rl~~-~Kg~~~ll~a~~~l~~~~~-~~l 230 (371)
T cd04962 155 QETYELFDITKEIEVIPNFVDEDRFRPKPDEALKRRLGAPEGEKVLIHI-S-NFRP-VKRIDDVIRIFAKVRKEVP-ARL 230 (371)
T ss_pred HHHHHHCCCCCCEEEECCCCCHHHCCCCCCHHHHHHHCCCCCCEEEEEE-C-CCCH-HCCHHHHHHHHHHHHHCCC-EEE
T ss_conf 9999960999888998797573214888507899970999898599994-2-6502-1496999999998630576-599
Q ss_pred EECCCCCHHHHHHHHHHHCCCCCEEEEEC--CCCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEE
Q ss_conf 20166336889999996048885055205--52035788763552331-----156688876275302540577410000
Q gi|254780767|r 230 SLVTVSSQENLVRCIVSKWDISPEIIIDK--EQKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNFF 302 (383)
Q Consensus 230 ~i~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i 302 (383)
++..........+...++.+....+.... ++..+.++.||+.+..| |.+.+|++.+|+|.| +...+.+
T Consensus 231 ~ivG~G~~~~~~~~~~~~~~l~~~V~f~G~~~~~~~~~~~adi~v~pS~~E~fg~vilEAma~G~PvI-at~~gg~---- 305 (371)
T cd04962 231 LLVGDGPERSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSEKESFGLAALEAMACGVPVV-ASNAGGI---- 305 (371)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEE-ECCCCCH----
T ss_conf 99826403778888887621031366327365599999855111387324432025999995699499-8689983----
Q ss_pred EECCCCCCEEEEHHHCCCC---CCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHCCC
Q ss_conf 1024676102302440784---2612420548989999999998449899999999999-999983899
Q gi|254780767|r 303 IFYIKTWTCALPNLIVDYP---LVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFE-NLWDRMNTK 367 (383)
Q Consensus 303 ~~lik~~~i~LpNii~~~~---ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~-~~~~~Lg~~ 367 (383)
+.++-+.. ++| .-+++.+++.+..+++|++.|++|-++.+ .+.+....+
T Consensus 306 -----------~e~v~~g~~G~l~~-----~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~ 358 (371)
T cd04962 306 -----------PEVVKHGETGFLVD-----VGDVEAMAEYALSLLEDDELWQEFSRAARNRAAERFDSE 358 (371)
T ss_pred -----------HHHHCCCCEEEEEC-----CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHH
T ss_conf -----------89970897189978-----999999999999997699999999999999999868999
No 18
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.68 E-value=1.5e-13 Score=109.44 Aligned_cols=329 Identities=19% Similarity=0.228 Sum_probs=194.6
Q ss_pred EEEEEECC----C-CHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH----CCCEEEECHHHCCEEEHHHHHHHHHHHHH
Q ss_conf 59999768----2-147899999999997389983999971789994----78806504445311013674664599999
Q gi|254780767|r 5 KIAVIAGE----I-SGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQK----EGLVSLFDFSELSVIGIMQVVRHLPQFIF 75 (383)
Q Consensus 5 ki~i~aGE----~-SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~----~G~~~~~~~~~l~v~G~~evl~~~~~~~~ 75 (383)
||.+++.. . ....+..+|+++|.++ +.++.+...+...... .+...... .. ............
T Consensus 1 kIlii~~~~~P~~GG~e~~~~~la~~L~~~-G~~V~vit~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~ 72 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAAR-GHEVTVLTPGDGGLPDEEEVGGIVVVRP-PP------LLRVRRLLLLLL 72 (374)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHC-CCEEEEEEECCCCCCHHHHCCCCEEEEC-CC------CCCCCHHHHHHH
T ss_conf 989994877999881999999999999977-9989999607988750342377169956-76------654200245678
Q ss_pred HHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEE---CCCCCCCCCCCH--------HHHHHHHHHHC
Q ss_conf 9999986100128886898511776579999866301346311110---022110036635--------57999998640
Q gi|254780767|r 76 RINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYV---CPSVWAWREGRA--------RKMCAYINQVI 144 (383)
Q Consensus 76 ~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv---~PqvWAWr~~R~--------k~~~~~~d~~~ 144 (383)
........++..+||+++.-+...+- .+..+++. .++|+++.+ .+..+.+..+.. +.+-+..|+++
T Consensus 73 ~~~~~~~~~~~~~~Dii~~~~~~~~~--~~~~~~~~-~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii 149 (374)
T cd03801 73 LALRLRRLLRRERFDVVHAHDWLALL--AAALAARL-LGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRII 149 (374)
T ss_pred HHHHHHHHHHHCCCCEEEECCCHHHH--HHHHHHHH-CCCCEEEEECCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf 99999999985599899978831789--99999986-6997899967862100221002568999999999998389999
Q ss_pred CCCCCCHHHHHCCCC---CCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHH
Q ss_conf 156774223200255---31476388211221001355888976187655650599853874301230511189998764
Q gi|254780767|r 145 SILPFEKEVMQRLGG---PPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLV 221 (383)
Q Consensus 145 ~ifpFE~~~f~k~~~---~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~ 221 (383)
|+=++..+.+.+..+ -++..+.|++ |...........+++.+..+++++| ++.| |-.+ .+....+++++..+.
T Consensus 150 ~~S~~~~~~l~~~~~~~~~ki~vI~ngi-d~~~~~~~~~~~~~~~~~~~~~~~i-l~vG-rl~~-~Kg~~~li~a~~~l~ 225 (374)
T cd03801 150 AVSEATREELRELGGVPPEKITVIPNGV-DTERFRPAPRAARRRLGIPEDEPVI-LFVG-RLVP-RKGVDLLLEALAKLR 225 (374)
T ss_pred ECCHHHHHHHHHHCCCCHHHEEEECCCC-CHHHCCCCCHHHHHHHCCCCCCEEE-EEEE-ECCC-CCCCHHHHHHHHHHH
T ss_conf 9899999999986199856899988976-7554175417789871899998299-9995-3320-028357899999998
Q ss_pred HCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEE----CCCCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEE
Q ss_conf 027351262016633688999999604888505520----552035788763552331-----15668887627530254
Q gi|254780767|r 222 KRNPFFRFSLVTVSSQENLVRCIVSKWDISPEIIID----KEQKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSI 292 (383)
Q Consensus 222 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~ 292 (383)
++.+++++++.......+.++....+.++..+|... .++..+.++.||+.+.+| |.+.+|++.+|+|.| +
T Consensus 226 ~~~~~~~l~ivG~g~~~~~~~~~~~~~~l~~~v~f~g~v~~~~~~~~~~~adi~v~pS~~E~~~~~~lEAma~G~PvI-~ 304 (374)
T cd03801 226 KEYPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVV-A 304 (374)
T ss_pred HHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEE-E
T ss_conf 528872999956881366999999973998559975864211377887654036587355432158999997699899-9
Q ss_pred CCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHCC
Q ss_conf 0577410000102467610230244078426124205489899999999984498999999999999-9998389
Q gi|254780767|r 293 YKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFEN-LWDRMNT 366 (383)
Q Consensus 293 Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~-~~~~Lg~ 366 (383)
...+.+ +.+|.+.+- =++-+.-+++.+++.+.++++|++.|+++-++.++ +.+....
T Consensus 305 t~~gg~---------------~e~i~~~~~--G~l~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~ 362 (374)
T cd03801 305 SDVGGI---------------PEVVEDGET--GLLVPPGDPEALAEAILRLLDDPELRRRLGEAARERVAERFSW 362 (374)
T ss_pred CCCCCH---------------HHHHCCCCE--EEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCH
T ss_conf 789975---------------888518971--8997899999999999999779999999999999999986899
No 19
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.67 E-value=5.1e-13 Score=105.86 Aligned_cols=332 Identities=16% Similarity=0.129 Sum_probs=186.7
Q ss_pred EEEEEECCC-----CHHHHHHHHHHHHHHHCCCCEEEEEEC--CHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHH
Q ss_conf 599997682-----147899999999997389983999971--7899947880650444531101367466459999999
Q gi|254780767|r 5 KIAVIAGEI-----SGDLLAGDLIKSLKEMVSYPINLVGVG--GPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRI 77 (383)
Q Consensus 5 ki~i~aGE~-----SGD~~~a~li~~Lk~~~~~~~~~~giG--G~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~ 77 (383)
||++++.+= ....+..+|.++|.++ +.++.++..+ ++......................... .......
T Consensus 1 KIl~i~~~~~P~~GG~e~~~~~la~~L~~~-Gh~V~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 76 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKL-GHEVTVATTDAGGDPLLVALNGVPVKLFSINVAYGLNLA---RYLFPPS 76 (375)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCHHH---HHHHHHH
T ss_conf 989995988999998999999999999977-998999970798764310246751674166555420133---3222068
Q ss_pred HHHHHHCCCCCCCEEEEECHHH-HHHHHHHHHHHHCCCCCCEEEECC--CCCCCCCCCHHH----------HHHHHHHHC
Q ss_conf 9998610012888689851177-657999986630134631111002--211003663557----------999998640
Q gi|254780767|r 78 NQTVELIVSSKPDVLLIVDNPD-FTHRVAKRVRKKMPNLPIINYVCP--SVWAWREGRARK----------MCAYINQVI 144 (383)
Q Consensus 78 ~~~~~~i~~~~Pd~vi~iD~pg-Fnl~lak~lkk~~~~ipvi~yv~P--qvWAWr~~R~k~----------~~~~~d~~~ 144 (383)
..........+||++.+-+... +++..++.+++ .++|+++.+-= .-|.+.....++ ..+..+.+.
T Consensus 77 ~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~--~~~p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 154 (375)
T cd03821 77 LLAWLRLNIREADIVHVHGLWSYPSLAAARAARK--YGIPYVVSPHGMLDPWALPHKALKKRLAWFLFERRLLQAAAAVH 154 (375)
T ss_pred HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHH--CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf 9999998548999999868625669999999998--49969999799860344443467888999999999874086999
Q ss_pred CCCCCCHHHHHC-CCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHC
Q ss_conf 156774223200-2553147638821122100135588897618765565059985387430123051118999876402
Q gi|254780767|r 145 SILPFEKEVMQR-LGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKR 223 (383)
Q Consensus 145 ~ifpFE~~~f~k-~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~ 223 (383)
+.-..+...... ..+-+++.+.|.+-...-...+....++..+..++++ +.++.| |-.+ .+....+++++..+.++
T Consensus 155 ~~s~~~~~~~~~~~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~~~~-~il~vG-Rl~~-~Kg~~~li~a~~~l~~~ 231 (375)
T cd03821 155 ATSEQEAAEIRRLGLKAPIAVIPNGVDIPPFAALPSRGRRRKFPILPDKR-IILFLG-RLHP-KKGLDLLIEAFAKLAER 231 (375)
T ss_pred ECCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCC-EEEEEE-ECCC-CHHHHHHHHHHHHHHHH
T ss_conf 76579999999628988889986972720148862378898548998983-899987-1343-21477899999999976
Q ss_pred CCCCEEEECCCC--CHHHHHHHHHHHCCCCCEEEEE----CCCCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEE
Q ss_conf 735126201663--3688999999604888505520----552035788763552331-----15668887627530254
Q gi|254780767|r 224 NPFFRFSLVTVS--SQENLVRCIVSKWDISPEIIID----KEQKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSI 292 (383)
Q Consensus 224 ~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~ 292 (383)
.+++++++.... ..+..++....++++..+|... ..+....++.||+.+.+| |.+.+|++.+|+|.| +
T Consensus 232 ~~~~~l~ivG~g~~~~~~~~~~~~~~~~l~~~V~f~G~~~~~~~~~~~~~adi~v~pS~~Egf~~~~lEAma~G~PvI-a 310 (375)
T cd03821 232 FPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVV-T 310 (375)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCEECCCCHHHHHHHHHHHHHHCCCCEE-E
T ss_conf 798599999789826789999999982678558534776831109898515001468477664589999998599999-9
Q ss_pred CCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHC
Q ss_conf 057741000010246761023024407842612420548989999999998449899999999999999-9838
Q gi|254780767|r 293 YKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLW-DRMN 365 (383)
Q Consensus 293 Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~-~~Lg 365 (383)
...+.+... +.+.. -++..+ +++.+++++.++++|++.|+++-++.++.. ++..
T Consensus 311 s~~gg~~ei---------------i~~~~---g~~~~~-~~~~l~~~i~~l~~d~~~~~~~~~~ar~~~~~~fs 365 (375)
T cd03821 311 TDKVPWQEL---------------IEYGC---GWVVDD-DVDALAAALRRALELPQRLKAMGENGRALVEERFS 365 (375)
T ss_pred CCCCCCHHE---------------EECCC---EEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 279980772---------------87884---899492-99999999999976999999999999999999589
No 20
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.65 E-value=4.6e-12 Score=99.59 Aligned_cols=300 Identities=12% Similarity=0.097 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCH------HHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 4789999999999738998399997178------9994788065044453110136746645999999999986100128
Q gi|254780767|r 15 GDLLAGDLIKSLKEMVSYPINLVGVGGP------SLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELIVSSK 88 (383)
Q Consensus 15 GD~~~a~li~~Lk~~~~~~~~~~giGG~------~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~ 88 (383)
...+..+|+++|.+. +.++.+...+++ ..++.|.+...-.. .. ....+.+..+.+.+++.+
T Consensus 14 aE~~~~~L~~~L~~~-g~~v~v~~~~~~~~~~~~~~~~~g~~v~~~~~---------~~---~~~~~~~~~l~~~i~~~~ 80 (358)
T cd03812 14 IETFIMNYYRNLDRS-KIQFDFLVTSKEEGDYDDEIEKLGGKIYYIPA---------RK---KNPLKYFKKLYKLIKKNK 80 (358)
T ss_pred HHHHHHHHHHHHHHC-CCEEEEEEECCCCCCHHHHHHHCCCEEEECCC---------CC---CCHHHHHHHHHHHHHHCC
T ss_conf 899999999999876-99899999879876368999975997999389---------76---428999999999999839
Q ss_pred CCEEEEE-CHHHHHHHHHHHHHHHCCCCCC-EEEE-C---CCCCCCCCCCH----HHHHHHHHHHCCCCCCCHH-HHHCC
Q ss_conf 8868985-1177657999986630134631-1110-0---22110036635----5799999864015677422-32002
Q gi|254780767|r 89 PDVLLIV-DNPDFTHRVAKRVRKKMPNLPI-INYV-C---PSVWAWREGRA----RKMCAYINQVISILPFEKE-VMQRL 157 (383)
Q Consensus 89 Pd~vi~i-D~pgFnl~lak~lkk~~~~ipv-i~yv-~---PqvWAWr~~R~----k~~~~~~d~~~~ifpFE~~-~f~k~ 157 (383)
||+|.+- .++.+-..++.++ .++|+ ++.. . +.-+.|+.... +.+.+..|+.++.-....+ .|...
T Consensus 81 ~DiIh~h~~~~~~~~~~~~~~----~~~~~~I~h~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iavS~~~~~~l~~~~ 156 (358)
T cd03812 81 YDIVHVHGSSASGFILLAAKK----AGVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEAGKWLFGKV 156 (358)
T ss_pred CCEEEECCCCHHHHHHHHHHH----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHC
T ss_conf 999998575068999999998----5999899985787445431678999999999999869999995889999997316
Q ss_pred CCCCEEECCCCCC-CCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 5531476388211-221001355888976187655650599853874301230511189998764027351262016633
Q gi|254780767|r 158 GGPPTTFVGHPLS-SSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSS 236 (383)
Q Consensus 158 ~~~~~~fVGHPl~-d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~ 236 (383)
..-+++.+-|++- +.+.......+.+++.+..+++. +.+.-| |-.+. +..+.+++++..+.+++|++++++.....
T Consensus 157 ~~~ki~vI~NgId~~~~~~~~~~~~~~~~~~~~~~~~-vi~~vG-Rl~~~-Kg~~~Li~A~~~l~~~~~~~~l~ivG~G~ 233 (358)
T cd03812 157 KNKKFKVIPNGIDLEKFIFNEEIRKKRRELGILEDKF-VIGHVG-RFSEQ-KNHEFLIEIFAELLKKNPNAKLLLVGDGE 233 (358)
T ss_pred CCCCEEEECCCCCHHHCCCCHHHHHHHHHHCCCCCCE-EEEEEC-CCHHH-HCCHHHHHHHHHHHHHCCCCEEEEECCCH
T ss_conf 8787899869807442387546689999838998986-999960-47665-17188999999865108882399962752
Q ss_pred HHHHHHHHHHHCCCCCEEEEE--CCCCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCC
Q ss_conf 688999999604888505520--552035788763552331-----1566888762753025405774100001024676
Q gi|254780767|r 237 QENLVRCIVSKWDISPEIIID--KEQKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNFFIFYIKTW 309 (383)
Q Consensus 237 ~~~~~~~~~~~~~~~~~i~~~--~~~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~ 309 (383)
.++.++....+.++..+|... .++..+.++.||+.+.+| |.+.+|++.+|+| ||+..+......
T Consensus 234 ~~~~l~~~i~~~~l~~~V~f~G~~~~~~~~~~~aDi~v~pS~~Egf~~v~lEAma~G~P-VVasd~gg~~~i-------- 304 (358)
T cd03812 234 LEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLP-CILSDTITKEVD-------- 304 (358)
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCEEEECCCCCCCCHHHHHHHHHCCC-EEEECCCCCCEE--------
T ss_conf 78789999998298724997467013789997398999748767884799999994998-999659997469--------
Q ss_pred CEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 102302440784261242054898999999999844989999999
Q gi|254780767|r 310 TCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAML 354 (383)
Q Consensus 310 ~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~ 354 (383)
+-+. + .++-.+-+|+.+++++.++++|++ |+++-
T Consensus 305 -------i~~~-~--~~l~~~~~~~~~a~~I~~l~~~~~-~~~~~ 338 (358)
T cd03812 305 -------LTDL-V--KFLSLDESPEIWAEEILKLKSEDR-RERSS 338 (358)
T ss_pred -------EECC-C--CEEECCCCHHHHHHHHHHHHCCHH-HHHHH
T ss_conf -------7299-5--579689999999999999865836-79999
No 21
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.64 E-value=5.1e-13 Score=105.86 Aligned_cols=317 Identities=17% Similarity=0.164 Sum_probs=182.5
Q ss_pred EEEEEECCC--CH-HHHHHHHHHHHHHHCCCCEEEEEECCH--HHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHH
Q ss_conf 599997682--14-789999999999738998399997178--9994788065044453110136746645999999999
Q gi|254780767|r 5 KIAVIAGEI--SG-DLLAGDLIKSLKEMVSYPINLVGVGGP--SLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQ 79 (383)
Q Consensus 5 ki~i~aGE~--SG-D~~~a~li~~Lk~~~~~~~~~~giGG~--~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~ 79 (383)
||+++.+.- .| ..+..+|+++|.++ +.++.+....+. .-.... .............+..........
T Consensus 1 KIl~v~~~~~~GG~e~~~~~la~~L~~~-G~~V~vi~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 72 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKR-GYDVTLVVLRDEGDYLELLP-------SNVKLIPVRVLKLKSLRDLLAILR 72 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHC-CCEEEEEEECCCCCCHHHCC-------CCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 9899969999915999999999999977-99799999779985133305-------673388613556553325999999
Q ss_pred HHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCC----CCCC--CCCCHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 986100128886898511776579999866301346311110022----1100--3663557999998640156774223
Q gi|254780767|r 80 TVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPS----VWAW--REGRARKMCAYINQVISILPFEKEV 153 (383)
Q Consensus 80 ~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~Pq----vWAW--r~~R~k~~~~~~d~~~~ifpFE~~~ 153 (383)
+.+.+++.+||+++.-..+...+ .+...++ .++|+++++--. .+.+ .....+...+.+|+++|+=++-.+.
T Consensus 73 l~~~i~~~~~DiI~~~~~~~~~~-~~~~~~~--~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~ 149 (353)
T cd03811 73 LRRLLRKEKPDVVISHLTTTPNV-LALLAAR--LGTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKED 149 (353)
T ss_pred HHHHHHHCCCCEEEECCCCHHHH-HHHHHHH--CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHH
T ss_conf 99999974998999988627899-9999974--79978999798704432334669999999998689999959999999
Q ss_pred HHCCCCC---CEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEE
Q ss_conf 2002553---1476388211221001355888976187655650599853874301230511189998764027351262
Q gi|254780767|r 154 MQRLGGP---PTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFS 230 (383)
Q Consensus 154 f~k~~~~---~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~ 230 (383)
+.+.-+. +++.+-||+ |. .........+...+.+.+.. ..++.| |-... +....++++++.+.+++++++++
T Consensus 150 ~~~~~~~~~~~i~vI~Ngv-d~-~~~~~~~~~~~~~~~~~~~~-~il~vG-rl~~~-Kg~~~li~a~~~l~~~~~~~~l~ 224 (353)
T cd03811 150 LLKLLGIPPDKIEVIYNPI-DI-EEIRALAEEPLELGIPPDGP-VILAVG-RLSPQ-KGFDTLIRAFALLRKEGPDARLV 224 (353)
T ss_pred HHHHCCCCHHHEEEECCCC-CH-HHHCHHHHHHHHHCCCCCCE-EEEEEE-ECCCC-CCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 9986199856899976756-86-76232456545306889986-999982-07664-22999999999766418737999
Q ss_pred ECCCCCHHHHHHHHHHHCCCCCEEEEE--CCCCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEEE
Q ss_conf 016633688999999604888505520--552035788763552331-----1566888762753025405774100001
Q gi|254780767|r 231 LVTVSSQENLVRCIVSKWDISPEIIID--KEQKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNFFI 303 (383)
Q Consensus 231 i~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~ 303 (383)
+......++.++....+.++...|... .++..+.++.||+.+.+| |-+.+|++.+|+|.| +...+.
T Consensus 225 ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~d~~~~~~~~di~v~pS~~Egfg~~~lEAma~G~pvI-~s~~gg------ 297 (353)
T cd03811 225 ILGDGPLREELEALAKELGLADRVHFLGFQSNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVV-ATDCPG------ 297 (353)
T ss_pred ECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCEEECCCCCCCCCHHHHHHHHCCCCEE-ECCCCC------
T ss_conf 7478603999997788659860687548664302324208688715434688538999998099899-948998------
Q ss_pred ECCCCCCEEEEHHHCCCC---CCCHHHCCCCCHHHHHHHHH---HHHCCHHHHHHHHHHHH
Q ss_conf 024676102302440784---26124205489899999999---98449899999999999
Q gi|254780767|r 304 FYIKTWTCALPNLIVDYP---LVPEYFNSMIRSEALVRWIE---RLSQDTLQRRAMLHGFE 358 (383)
Q Consensus 304 ~lik~~~i~LpNii~~~~---ivPEliQ~~~~~~~i~~~~~---~ll~d~~~r~~~~~~~~ 358 (383)
++.++-+.. ++| .-+++.+++.+. ++++|++.|++|-++.+
T Consensus 298 ---------~~e~i~~g~~G~l~~-----~~d~~~la~~i~~l~~l~~~~~~~~~~g~~~~ 344 (353)
T cd03811 298 ---------PREILEDGENGLLVP-----VGDEAALAAAALALLDLLLDPELRERLAAAAR 344 (353)
T ss_pred ---------HHHHHCCCCCEEEEC-----CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf ---------489844898389978-----99999999999999851499999999999999
No 22
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.64 E-value=1e-13 Score=110.46 Aligned_cols=318 Identities=19% Similarity=0.251 Sum_probs=185.3
Q ss_pred EEEEEECC---CCH-HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHH-HHHHHHHHHHHHH
Q ss_conf 59999768---214-789999999999738998399997178999478806504445311013674-6645999999999
Q gi|254780767|r 5 KIAVIAGE---ISG-DLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQV-VRHLPQFIFRINQ 79 (383)
Q Consensus 5 ki~i~aGE---~SG-D~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~ev-l~~~~~~~~~~~~ 79 (383)
||.++... ..| ..+...|+++|.++ +.++.+....++.-..... ...+.+..+... .......+.....
T Consensus 1 KIl~v~~~l~~~GG~e~~~~~la~~L~~~-G~~V~vit~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~ 74 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEK-GHEVTIISLDKGEPPFYEL-----DPKIKVIDLGDKRDSKLLARFKKLRR 74 (348)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHC-CCEEEEEEECCCCCCCCCC-----CCCEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 98999797999987899999999999877-9989999966999864405-----89749998887654205678999999
Q ss_pred HHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEC--CCCCCCCCCC---HHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 9861001288868985117765799998663013463111100--2211003663---5579999986401567742232
Q gi|254780767|r 80 TVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVC--PSVWAWREGR---ARKMCAYINQVISILPFEKEVM 154 (383)
Q Consensus 80 ~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~--PqvWAWr~~R---~k~~~~~~d~~~~ifpFE~~~f 154 (383)
+.+.++..+||+++.-......+ ++ .++.+ ++|+++..- +..+-+...+ .+...+..|.+.++-.+....+
T Consensus 75 l~~~~~~~~~Dvi~~~~~~~~~~-~~-~~~~~--~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~ii~~S~~~~~~~ 150 (348)
T cd03820 75 LRKLLKNNKPDVVISFLTSLLTF-LA-SLGLK--IVKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDRALY 150 (348)
T ss_pred HHHHHHHCCCCEEEECCCCHHHH-HH-HHHCC--CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHH
T ss_conf 99999975999999989636999-99-99759--9828999757856630136799999999986899999699999987
Q ss_pred HCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 00255314763882112210013558889761876556505998538743012305111899987640273512620166
Q gi|254780767|r 155 QRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTV 234 (383)
Q Consensus 155 ~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~ 234 (383)
....+-++..+-||+-.... ......+.+ +.++.| |-.+- +....+++++..+.++.|++++++...
T Consensus 151 ~~~~~~k~~vI~N~v~~~~~----------~~~~~~~~~-~il~vG-Rl~~~-Kg~~~li~a~~~l~~~~~~~~l~ivG~ 217 (348)
T cd03820 151 YKKFNKNVVVIPNPLPFPPE----------EPSSDLKSK-RILAVG-RLVPQ-KGFDLLIEAWAKIAKKHPDWKLRIVGD 217 (348)
T ss_pred HHCCCCCEEEECCCCCHHHC----------CCCCCCCCC-EEEEEE-CCCCC-CCHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 52378898998899882322----------654466798-899993-78632-494999888898886489859999946
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEE--CCCCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEEEECCC
Q ss_conf 33688999999604888505520--552035788763552331-----15668887627530254057741000010246
Q gi|254780767|r 235 SSQENLVRCIVSKWDISPEIIID--KEQKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNFFIFYIK 307 (383)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik 307 (383)
...++.++...++.++...+... .++..+.++.||+.+.+| |.+.+|++++|+|.| ++...
T Consensus 218 G~~~~~l~~~i~~~~l~~~v~~~G~~~~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~PvI-as~~~----------- 285 (348)
T cd03820 218 GPEREALEALIKELGLEDRVILLGFTKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVI-SFDCP----------- 285 (348)
T ss_pred CCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEE-EECCC-----------
T ss_conf 875320156777633577364247522223322135753146412458708999998699999-96799-----------
Q ss_pred CCCEEEEHHHCCCC---CCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 76102302440784---26124205489899999999984498999999999999999838
Q gi|254780767|r 308 TWTCALPNLIVDYP---LVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMN 365 (383)
Q Consensus 308 ~~~i~LpNii~~~~---ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg 365 (383)
.+++.++.+.. ++| .-+++.+++++..+++|++.++++.++.++..++..
T Consensus 286 ---gg~~e~v~~~~~G~l~~-----~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~fs 338 (348)
T cd03820 286 ---TGPSEIIEDGVNGLLVP-----NGDVEALAEALLRLMEDEELRKRMGANARESAERFS 338 (348)
T ss_pred ---CCHHHHHCCCCEEEEEC-----CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
T ss_conf ---88499953896299988-----999999999999997799999999999999999699
No 23
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.63 E-value=4.2e-12 Score=99.81 Aligned_cols=320 Identities=18% Similarity=0.213 Sum_probs=180.4
Q ss_pred EEEEEECCCCH--HHHHHHHHHHHHHHCCCCEEEEEECCHH---HHHCCCEEE-ECHHHCCEEEHHHHHHHHHHHHHHHH
Q ss_conf 59999768214--7899999999997389983999971789---994788065-04445311013674664599999999
Q gi|254780767|r 5 KIAVIAGEISG--DLLAGDLIKSLKEMVSYPINLVGVGGPS---LQKEGLVSL-FDFSELSVIGIMQVVRHLPQFIFRIN 78 (383)
Q Consensus 5 ki~i~aGE~SG--D~~~a~li~~Lk~~~~~~~~~~giGG~~---m~~~G~~~~-~~~~~l~v~G~~evl~~~~~~~~~~~ 78 (383)
||+.++- .+| ..+...|+++|.++ +.++.+..-+++. ..+.|++.. .+...- ++ ...+.++.+.
T Consensus 1 kil~i~~-~~GG~e~~~~~La~~L~~~-Gh~V~vit~~~~~~~~~~~~gv~~~~~~~~~~---~~-----~~~~~~~~~~ 70 (359)
T cd03808 1 KILHIVT-VDGGLYSFRLPLIKALRAA-GYEVHVVAPPGDELEELEALGVKVIPIPLDRR---GI-----NPFKDLKALL 70 (359)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHHHHC-CCEEEEEEECCCCCCHHHHCCCEEEEECCCCC---CC-----CHHHHHHHHH
T ss_conf 9899975-8765999999999999976-99999997079874336757988999278777---78-----8699999999
Q ss_pred HHHHHCCCCCCCEEEEECH-HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCC-----CHH----HHHHHHHHHCCCCC
Q ss_conf 9986100128886898511-7765799998663013463111100221100366-----355----79999986401567
Q gi|254780767|r 79 QTVELIVSSKPDVLLIVDN-PDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREG-----RAR----KMCAYINQVISILP 148 (383)
Q Consensus 79 ~~~~~i~~~~Pd~vi~iD~-pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~-----R~k----~~~~~~d~~~~ifp 148 (383)
++.+.+++.+||++.+-+. |++--.+|.++.+ ..|++|.+-=--|....+ ..+ ...+..|+++|+-+
T Consensus 71 ~l~~~i~~~~pDvIh~~~~~~~~~~~la~~~~~---~~~~v~~~h~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ii~~S~ 147 (359)
T cd03808 71 RLYRLLRKERPDIVHTHTPKPGILGRLAARLAG---VPKVIYTVHGLGFVFTSGGLKRRLYLLLERLALRFTDKVIFQNE 147 (359)
T ss_pred HHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCC---CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCH
T ss_conf 999999984998999906513578999998649---98699995677401245477899999999999964999999498
Q ss_pred CCHHHHHCCC----CCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCC
Q ss_conf 7422320025----531476388211221001355888976187655650599853874301230511189998764027
Q gi|254780767|r 149 FEKEVMQRLG----GPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRN 224 (383)
Q Consensus 149 FE~~~f~k~~----~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~ 224 (383)
...+.+.+.. ...+.+.+++. |. .... .......+ ++.+.++-| |-.+ .+....++++++.+.+++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~i~~~gv-d~-~~~~-----~~~~~~~~-~~~~i~~vG-rl~~-~Kg~~~li~a~~~l~~~~ 217 (359)
T cd03808 148 DDRDLALKLGIIKKKKTVLIPGSGV-DL-DRFS-----PSPEPIPE-DDPVFLFVA-RLLK-DKGIDELLEAARILKAKG 217 (359)
T ss_pred HHHHHHHHHCCCCCCCEEEECCCCC-CH-HHCC-----CCCCCCCC-CCEEEEEEC-CCCH-HCCHHHHHHHHHHHHHHC
T ss_conf 9999999837997460899779976-86-6538-----66546898-984999980-4632-207399999999998639
Q ss_pred CCCEEEECCCCCH-HHHHHHHHHHCCCCCEEEEE--CCCCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCC
Q ss_conf 3512620166336-88999999604888505520--552035788763552331-----156688876275302540577
Q gi|254780767|r 225 PFFRFSLVTVSSQ-ENLVRCIVSKWDISPEIIID--KEQKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSE 296 (383)
Q Consensus 225 ~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~i~~~--~~~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~ 296 (383)
+++++++...... .........+......+... .++..+.++.||+.+.+| |.+.+|++.+|+|.| +...+
T Consensus 218 ~~~~l~ivG~g~~~~~~~~~~~~~~~~~~~v~f~G~~~~~~~~~~~~di~v~pS~~Egf~~~~lEAma~G~PvI-~s~~g 296 (359)
T cd03808 218 PNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADVFVLPSYREGLPRVLLEAMAMGRPVI-ATDVP 296 (359)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCEE-ECCCC
T ss_conf 98089997688725899999999718898699807577899999960215787521357842899986699899-94899
Q ss_pred CCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHC
Q ss_conf 410000102467610230244078426124205489899999999984498999999999999-999838
Q gi|254780767|r 297 WIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFEN-LWDRMN 365 (383)
Q Consensus 297 ~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~-~~~~Lg 365 (383)
.. +.++.+.+- =++-+.-+++.+++++..+++|++.++++-++..+ +.++..
T Consensus 297 g~---------------~e~i~~~~~--G~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs 349 (359)
T cd03808 297 GC---------------REAVIDGVN--GFLVPPGDAEALADAIERLIEDPELRARMGQAARKRAEEEFD 349 (359)
T ss_pred CH---------------HHHHHCCCC--EEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 72---------------888607981--899899999999999999988999999999999999998779
No 24
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.62 E-value=6.5e-12 Score=98.58 Aligned_cols=322 Identities=13% Similarity=0.149 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 47899999999997389983999971789994788065044453110136746645999999999986100128886898
Q gi|254780767|r 15 GDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLI 94 (383)
Q Consensus 15 GD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~ 94 (383)
...+...|+++|.++ +.++.+...+|+.-... ..+..........++...+.....++.+.+++++||++..
T Consensus 14 ~e~~~~~la~~L~~~-G~~V~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDvIh~ 85 (360)
T cd04951 14 AEKQVVDLADQFVAK-GHQVAIISLTGESEVKP-------PIDATIILNLNMSKNPLSFLLALWKLRKILRQFKPDVVHA 85 (360)
T ss_pred HHHHHHHHHHHHHHC-CCEEEEEEECCCCCCCC-------CCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 799999999999976-99899998179854443-------3457337863766676789999999999999829999998
Q ss_pred EC-HHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHH-----HHHHHHHHCCCCCCCHHHHHCCC---CCCEEEC
Q ss_conf 51-177657999986630134631111002211003663557-----99999864015677422320025---5314763
Q gi|254780767|r 95 VD-NPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARK-----MCAYINQVISILPFEKEVMQRLG---GPPTTFV 165 (383)
Q Consensus 95 iD-~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~-----~~~~~d~~~~ifpFE~~~f~k~~---~~~~~fV 165 (383)
-. +++.-.++++.. ..+.|++...--.- . .++.+. ..+..|...++-....+.|-+.. .-++..+
T Consensus 86 h~~~~~~~~~~~~~~---~~~~~~i~t~h~~~-~--~~~~~~~~~~~~~~~~~~~~~vs~~~~~~~~~~~~~~~~ki~vI 159 (360)
T cd04951 86 HMFHANIFARLLRLF---LPSPPLICTAHSKN-E--GGRLRMLAYRLTDFLSDLTTNVSKEALDYFIASKAFNANKSFVV 159 (360)
T ss_pred CCCCHHHHHHHHHHH---CCCCCEEEEECCCC-C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEE
T ss_conf 663078999999985---79981999858887-5--41799999999988878652333999999998558884448996
Q ss_pred CCCCC-CCCC-CCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHH
Q ss_conf 88211-2210-013558889761876556505998538743012305111899987640273512620166336889999
Q gi|254780767|r 166 GHPLS-SSPS-ILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRC 243 (383)
Q Consensus 166 GHPl~-d~~~-~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~ 243 (383)
-|++- +.+. ........+.+++++++..+ .+..| |-.+ .+..+.+++++..+.++++++++++......++.++.
T Consensus 160 ~ngvd~~~f~~~~~~~~~~r~~~~~~~~~~~-il~vg-Rl~~-~Kg~~~li~a~~~l~~~~~~~~l~ivG~G~~~~~l~~ 236 (360)
T cd04951 160 YNGIDTDRFRKDPARRLKIRNALGVKNDTFV-ILAVG-RLVE-AKDYPNLLKAFAKLLSDYLDIKLLIAGDGPLRATLER 236 (360)
T ss_pred CCCCCHHHCCCCHHHHHHHHHHCCCCCCCEE-EEEEE-CCCC-CCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH
T ss_conf 6873444218761567889986199989879-99984-0663-3115789999999986489979999678256788876
Q ss_pred HHHHCCCCCEEEEEC--CCCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHH
Q ss_conf 996048885055205--52035788763552331-----15668887627530254057741000010246761023024
Q gi|254780767|r 244 IVSKWDISPEIIIDK--EQKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNL 316 (383)
Q Consensus 244 ~~~~~~~~~~i~~~~--~~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNi 316 (383)
..++.++..++.... ++..+.++.||+.+.+| |.+.||++.+|+| ||++..+.+...+. ..
T Consensus 237 ~~~~~~l~~~v~f~G~~~d~~~~~~~adi~v~pS~~Egfg~~~lEAma~G~P-vI~s~~gg~~eii~---~~-------- 304 (360)
T cd04951 237 LIKALGLSNRVKLLGLRDDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELP-VVATDAGGVREVVG---DS-------- 304 (360)
T ss_pred HHHHHCCCCCEEECCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCC-EEECCCCCHHHEEC---CC--------
T ss_conf 6776177761542475102689876214255886557887089999985999-99878997265574---86--------
Q ss_pred HCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHCCCCCHHHHHHHH
Q ss_conf 407842612420548989999999998449899999999999-9999838999989999999
Q gi|254780767|r 317 IVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFE-NLWDRMNTKKPAGHMAAEI 377 (383)
Q Consensus 317 i~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~-~~~~~Lg~~~~a~~~AA~~ 377 (383)
| -++| .-+++.+++.+.++++|++.++++..+.. .+.++.. .++++.+.
T Consensus 305 --G-~lv~-----~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~v~~~fs----~~~~~~~~ 354 (360)
T cd04951 305 --G-LIVP-----ISDPEALANKIDEILKMSGEERDIIGARRERIVKKFS----INSIVQQW 354 (360)
T ss_pred --E-EEEC-----CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC----HHHHHHHH
T ss_conf --4-9983-----9999999999999987919999999999999998699----99999999
No 25
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.61 E-value=1.9e-12 Score=102.04 Aligned_cols=313 Identities=14% Similarity=0.108 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEEC--C---HHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 7899999999997389983999971--7---8999478806504445311013674664599999999998610012888
Q gi|254780767|r 16 DLLAGDLIKSLKEMVSYPINLVGVG--G---PSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPD 90 (383)
Q Consensus 16 D~~~a~li~~Lk~~~~~~~~~~giG--G---~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd 90 (383)
..+...|+++|.+. +....+..+. | ++..+.|++... +..-. .. ....+.++.+.+++.+||
T Consensus 17 E~~~~~l~~~l~~~-~~~~~vi~~~~~~~~~~~~~~~~v~~~~-l~~~~-------~~----~~~~~~~l~~li~~~kpD 83 (374)
T TIGR03088 17 ENGLVNLINHLPAD-RYRHAVVALTEVSAFRKRIQRPDVAFYA-LHKQP-------GK----DVAVYPQLYRLLRQLRPD 83 (374)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEEECCCCHHHHHHHHCCCEEEE-CCCCC-------CC----CHHHHHHHHHHHHHHCCC
T ss_conf 99999999978875-9939999978984578999868988999-07887-------64----799999999999983984
Q ss_pred EEEEECHHHHHHHHHHHHHHHCCCCCC-EEE------ECCCCCCCCCCCHHH-HHHHHHHHCCCCCCCHHHHHCCCCC--
Q ss_conf 689851177657999986630134631-111------002211003663557-9999986401567742232002553--
Q gi|254780767|r 91 VLLIVDNPDFTHRVAKRVRKKMPNLPI-INY------VCPSVWAWREGRARK-MCAYINQVISILPFEKEVMQRLGGP-- 160 (383)
Q Consensus 91 ~vi~iD~pgFnl~lak~lkk~~~~ipv-i~y------v~PqvWAWr~~R~k~-~~~~~d~~~~ifpFE~~~f~k~~~~-- 160 (383)
+|-.-+++.+...++..+. ++|+ +|- -.|.-+.|+....++ +..+.|+++|+-....+++.+.-++
T Consensus 84 iIh~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~~~~~k~~~~~~~~~i~vs~~~~~~~~~~~~~~~ 159 (374)
T TIGR03088 84 IVHTRNLAALEAQLPAALA----GVPARIHGEHGRDVFDLDGSNWKYRWLRRLYRPLIHHYVAVSRDLEDWLRGPVKVPP 159 (374)
T ss_pred EEEECCHHHHHHHHHHHHC----CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHCCCH
T ss_conf 8986361169999999984----998899960787543743105899999999998568899915899999998709987
Q ss_pred -CEEECCCCCC-CCC-CCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCC----CCEEEECC
Q ss_conf -1476388211-221-0013558889761876556505998538743012305111899987640273----51262016
Q gi|254780767|r 161 -PTTFVGHPLS-SSP-SILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNP----FFRFSLVT 233 (383)
Q Consensus 161 -~~~fVGHPl~-d~~-~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~----~~~~~i~~ 233 (383)
++..+-|++- +.. +...++.+.+...+..++ +.+.+..| |-.+. +..+.++++...+.++.| ++++++..
T Consensus 160 ~ki~~I~Ngid~~~f~~~~~~~~~~~~~~~~~~~-~~~i~~vg-Rl~~~-Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G 236 (374)
T TIGR03088 160 AKIHQIYNGVDTERFHPSRGDRSPILPPDFFADE-SVVVGTVG-RLQAV-KDQPTLVRAFALLVRQLPEGAERLRLVIVG 236 (374)
T ss_pred HHEEEECCCCCHHHCCCCCCCHHHHHHHCCCCCC-CEEEEEEE-ECEEE-CCHHHHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 8989966877652158773106776543158987-76999966-34030-787999999999998677766888999981
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEE--CCCCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEEEECC
Q ss_conf 633688999999604888505520--552035788763552331-----1566888762753025405774100001024
Q gi|254780767|r 234 VSSQENLVRCIVSKWDISPEIIID--KEQKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNFFIFYI 306 (383)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~~li 306 (383)
....+..+++...+.++...+.+. ..+..+.++.||+.+.+| |.+-+|++.+|+| ||++..+.
T Consensus 237 ~G~~~~~l~~~i~~~~l~~~v~f~G~~~~~~~~~~~~Di~v~~S~~EGf~~~llEAma~g~P-vIasdvgg--------- 306 (374)
T TIGR03088 237 DGPARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFVLPSLAEGISNTILEAMASGLP-VIATAVGG--------- 306 (374)
T ss_pred CCCCHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHCCCEEECCCCCCCCHHHHHHHHCCCC-EEECCCCC---------
T ss_conf 77659999999997187775853787468999999639003134434467799999975997-99918998---------
Q ss_pred CCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHCC
Q ss_conf 67610230244078426124205489899999999984498999999999999-9998389
Q gi|254780767|r 307 KTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFEN-LWDRMNT 366 (383)
Q Consensus 307 k~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~-~~~~Lg~ 366 (383)
.++++-+..- - ++-..-+++.+++++.++++|++.|+++-+..++ +.++...
T Consensus 307 ------~~eii~~~~~-G-~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~v~~~Fs~ 359 (374)
T TIGR03088 307 ------NPELVQHGVT-G-ALVPPGDAVALARALQPYVSDPAARRAHGAAGRARAEQQFSI 359 (374)
T ss_pred ------HHHHHCCCCC-E-EEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCH
T ss_conf ------1898617986-8-997899999999999999779999999999999999987899
No 26
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.61 E-value=3.1e-12 Score=100.66 Aligned_cols=323 Identities=17% Similarity=0.172 Sum_probs=187.8
Q ss_pred EEEEEEC--CCC-HHHHHHHHHHHHHHHCCCCEEEEEEC--C---HHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHH
Q ss_conf 5999976--821-47899999999997389983999971--7---89994788065044453110136746645999999
Q gi|254780767|r 5 KIAVIAG--EIS-GDLLAGDLIKSLKEMVSYPINLVGVG--G---PSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFR 76 (383)
Q Consensus 5 ki~i~aG--E~S-GD~~~a~li~~Lk~~~~~~~~~~giG--G---~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~ 76 (383)
||+.+.. +.. +..+...|+++|.++ +.++.+.... | +.....|++... ++.-.. ...+ ..
T Consensus 1 KIl~v~~~l~~GG~e~~~~~la~~L~~~-g~~v~vi~~~~~~~~~~~~~~~~i~v~~----l~~~~~---~~~~----~~ 68 (365)
T cd03807 1 KVLHVITGLDVGGAERMLVRLLKGLDRD-RFEHVVISLTDRGELGEELEEAGVPVYC----LGKRPG---RPDP----GA 68 (365)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHC-CCEEEEEEECCCCCHHHHHHHCCCEEEE----CCCCCC---CCCH----HH
T ss_conf 9899969899941899999999999977-9949999957998557898748956999----278766---5688----99
Q ss_pred HHHHHHHCCCCCCCEEEEEC-HHHHHHHHHHHHHHHCCCCCCEEEEC---CCCCCCCCCCHH----HHHHHHHHHCCCCC
Q ss_conf 99998610012888689851-17765799998663013463111100---221100366355----79999986401567
Q gi|254780767|r 77 INQTVELIVSSKPDVLLIVD-NPDFTHRVAKRVRKKMPNLPIINYVC---PSVWAWREGRAR----KMCAYINQVISILP 148 (383)
Q Consensus 77 ~~~~~~~i~~~~Pd~vi~iD-~pgFnl~lak~lkk~~~~ipvi~yv~---PqvWAWr~~R~k----~~~~~~d~~~~ifp 148 (383)
+.++.+.+++.+||++.+-. .+.+--.++..+.+ .+|++|.+- ...+.|.....+ .+.+..|+++|+-+
T Consensus 69 ~~~l~~~i~~~~~DiIh~~~~~~~~~~~l~~~~~~---~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~S~ 145 (365)
T cd03807 69 LLRLYKLIRRLRPDVVHTWMYHADLYGGLAARLAG---VPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVANSA 145 (365)
T ss_pred HHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCC---CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCH
T ss_conf 99999999983999999877426799999999759---982899956885321010579999999999842999999499
Q ss_pred CCHHHHHCCC--CCCEEECCCCCC-CCC-CCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCC
Q ss_conf 7422320025--531476388211-221-001355888976187655650599853874301230511189998764027
Q gi|254780767|r 149 FEKEVMQRLG--GPPTTFVGHPLS-SSP-SILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRN 224 (383)
Q Consensus 149 FE~~~f~k~~--~~~~~fVGHPl~-d~~-~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~ 224 (383)
...+++.++. .-++..+-|++- +.+ .........+++.+++++.. +.++.| |-.+ .+....+++++..+.+++
T Consensus 146 ~~~~~~~~~~~~~~~~~vI~ngid~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~vG-rl~~-~Kg~~~li~a~~~l~~~~ 222 (365)
T cd03807 146 AAAEYHQAIGYPPKKIVVIPNGVDTERFSPDLDARARLREELGLPEDTF-LIGIVA-RLHP-QKDHATLLRAAALLLKKF 222 (365)
T ss_pred HHHHHHHHHCCCHHHEEEECCCCCHHHCCCCHHHHHHHHHHHCCCCCCE-EEEEEE-CCCC-CCHHHHHHHHHHHHHHHC
T ss_conf 9999999819984568998998678866987036799999829998886-999950-4653-101567889999988758
Q ss_pred CCCEEEECCCCCHHH-HHHHHHHHCCCCCEEEEEC--CCCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCC
Q ss_conf 351262016633688-9999996048885055205--52035788763552331-----156688876275302540577
Q gi|254780767|r 225 PFFRFSLVTVSSQEN-LVRCIVSKWDISPEIIIDK--EQKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSE 296 (383)
Q Consensus 225 ~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~i~~~~--~~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~ 296 (383)
+++++++......+. ......+..++...+.... ++..+.++.||+.+.+| |.+.+|++.+|+| ||+...+
T Consensus 223 ~~~~l~i~G~g~~~~~~~~~~~~~~~l~~~v~f~G~~~d~~~~~~~adi~v~pS~~Egf~~~~lEAma~G~P-vI~s~~g 301 (365)
T cd03807 223 PNARLLLVGDGPDRANLELLALKELGLEDKVILLGERSDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLP-VVATDVG 301 (365)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCC-EEECCCC
T ss_conf 882799983785588999989997599873999366331899998716033887000533279999985999-9986799
Q ss_pred CCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHC
Q ss_conf 410000102467610230244078426124205489899999999984498999999999999-999838
Q gi|254780767|r 297 WIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFEN-LWDRMN 365 (383)
Q Consensus 297 ~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~-~~~~Lg 365 (383)
..... +-+.. ++-+.-+++.+++++.++++|++.+++|.++..+ +.++..
T Consensus 302 g~~ei---------------i~~~G----~l~~~~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~fs 352 (365)
T cd03807 302 DNAEL---------------VGDTG----FLVPPGDPEALAEAIEALLADPALRQALGEAARERIEENFS 352 (365)
T ss_pred CCHHE---------------ECCCE----EEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 84114---------------51767----99779999999999999977999999999999999998689
No 27
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.60 E-value=1.4e-12 Score=102.95 Aligned_cols=313 Identities=13% Similarity=0.143 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEEC--CH---HHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 7899999999997389983999971--78---999478806504445311013674664599999999998610012888
Q gi|254780767|r 16 DLLAGDLIKSLKEMVSYPINLVGVG--GP---SLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPD 90 (383)
Q Consensus 16 D~~~a~li~~Lk~~~~~~~~~~giG--G~---~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd 90 (383)
..|...|.++|.++ +.++.+..-. +. +....|++..+- ....+.. -..++.+...+..+.+.+..++||
T Consensus 17 e~~v~~La~~L~~~-Gh~V~Vit~~~~~~~~~~~~~~g~~V~~~----p~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~D 90 (398)
T cd03796 17 ETHIYQLSQCLIKR-GHKVVVITHAYGNRVGIRYLTNGLKVYYL----PFVVFYN-QSTLPTFFGTFPLLRNILIRERIT 90 (398)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCEEECCCCEEEEC----CCCCCCC-CCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999976-99899996899988774685388469975----6633456-311677988899999999767998
Q ss_pred EEEEECH-HHHHHHHHHHHHHHCCCCCCEEEECCCCCCC-------CCCCHHHHHHHHHHHCCCCCCCHHHH-HCC--CC
Q ss_conf 6898511-7765799998663013463111100221100-------36635579999986401567742232-002--55
Q gi|254780767|r 91 VLLIVDN-PDFTHRVAKRVRKKMPNLPIINYVCPSVWAW-------REGRARKMCAYINQVISILPFEKEVM-QRL--GG 159 (383)
Q Consensus 91 ~vi~iD~-pgFnl~lak~lkk~~~~ipvi~yv~PqvWAW-------r~~R~k~~~~~~d~~~~ifpFE~~~f-~k~--~~ 159 (383)
+|-.=+. +.+. ....+.++..|+|+++-. -+.|.+ ..+-.+...+..|+++|+-.+..+.+ .+. ..
T Consensus 91 IIH~H~~~~~l~--~~~~~~ar~~g~~~V~T~-H~~~~~~~~~~~~~~~~~~~~l~~~d~vIavS~~~~e~~~~~~~~~~ 167 (398)
T cd03796 91 IVHGHQAFSALA--HEALLHARTMGLKTVFTD-HSLFGFADASSIHTNKLLRFSLADVDHVICVSHTSKENTVLRASLDP 167 (398)
T ss_pred EEEECCHHHHHH--HHHHHHHHHCCCCEEEEE-CCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHCCCC
T ss_conf 899896268899--999999875599789983-44324463149999999999998579999997799999999848994
Q ss_pred CCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHH
Q ss_conf 31476388211221001355888976187655650599853874301230511189998764027351262016633688
Q gi|254780767|r 160 PPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQEN 239 (383)
Q Consensus 160 ~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~ 239 (383)
-+++.+-|.+ |.... .+.. .....++.+.++.| |-.+ .+.+..+++++..+.+++|+.++++.......+
T Consensus 168 ~ki~vIpNGV-d~~~f-~p~~------~~~~~~~~~il~vG-RL~~-~KG~d~Li~A~~~l~~~~p~~~lvIvGdGp~~~ 237 (398)
T cd03796 168 ERVSVIPNAV-DSSDF-TPDP------SKRDNDKITIVVIS-RLVY-RKGIDLLVGIIPEICKKHPNVRFIIGGDGPKRI 237 (398)
T ss_pred CCEEEECCCC-CHHHC-CCCC------CCCCCCCEEEEEEC-CCCC-HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHH
T ss_conf 1099988957-47644-8872------21588986999970-6750-300999999999999658995999937871189
Q ss_pred HHHHHHHHCCCCCEEEEE----CCCCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCC
Q ss_conf 999999604888505520----552035788763552331-----15668887627530254057741000010246761
Q gi|254780767|r 240 LVRCIVSKWDISPEIIID----KEQKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWT 310 (383)
Q Consensus 240 ~~~~~~~~~~~~~~i~~~----~~~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~ 310 (383)
.+++..++.++...|.+. .++..++++.||+.+.+| |.+.||++.+|+| ||+.+++.+...+
T Consensus 238 ~L~~l~~~~~l~~~V~flG~v~~~~l~~~~~~aDvfv~PS~~Egfglv~lEAmA~G~P-VVat~vgG~~Evv-------- 308 (398)
T cd03796 238 LLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLL-VVSTRVGGIPEVL-------- 308 (398)
T ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHCCCC-EEECCCCCCCCEE--------
T ss_conf 9999998723367289758885677788887744212765424666799999983998-9988899861134--------
Q ss_pred EEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHCCC
Q ss_conf 0230244078426124205489899999999984498999999999999-99983899
Q gi|254780767|r 311 CALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFEN-LWDRMNTK 367 (383)
Q Consensus 311 i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~-~~~~Lg~~ 367 (383)
-+... ++- .-+++.+++++..+++|++.++++-++.++ +.++...+
T Consensus 309 -------~~~~~---~~~-~~d~~~la~~l~~ll~~~~~~~~~~~~~r~~v~~~fsw~ 355 (398)
T cd03796 309 -------PPDMI---LLA-EPDVESIVRKLEEAISILRTGKHDPWSFHNRVKKMYSWE 355 (398)
T ss_pred -------ECCCE---EEC-CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHH
T ss_conf -------18936---874-899999999999997699999999999999999969999
No 28
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.58 E-value=6.2e-12 Score=98.70 Aligned_cols=305 Identities=16% Similarity=0.178 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCHH---HHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 7899999999997389983999971789---9947880650444531101367466459999999999861001288868
Q gi|254780767|r 16 DLLAGDLIKSLKEMVSYPINLVGVGGPS---LQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVL 92 (383)
Q Consensus 16 D~~~a~li~~Lk~~~~~~~~~~giGG~~---m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~v 92 (383)
..+...|.++|.++ +.++.+..-+|+. .+..|.+.. .+.-.-++.+...+.+..+.+.+++++||+|
T Consensus 13 E~~~~~La~~L~~~-Gh~V~vi~~~~~~~~~~~~~g~~~~---------~~~~~~~~~~~~~~~~~~l~~~l~~~~~Div 82 (355)
T cd03819 13 ERGTLELARALVER-GHRSLVASAGGRLVAELEAEGSRHI---------KLPFISKNPLRILLNVARLRRLIREEKVDIV 82 (355)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEECCCCCCHHHHHCCCEEE---------EECCCCCCCHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 99999999999987-9989999689987155663496699---------9178778828999999999999999699899
Q ss_pred EEEC-HHHHHHHHHHHHHHHCCCCCCEEEEC---CCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCC---CEEEC
Q ss_conf 9851-17765799998663013463111100---22110036635579999986401567742232002553---14763
Q gi|254780767|r 93 LIVD-NPDFTHRVAKRVRKKMPNLPIINYVC---PSVWAWREGRARKMCAYINQVISILPFEKEVMQRLGGP---PTTFV 165 (383)
Q Consensus 93 i~iD-~pgFnl~lak~lkk~~~~ipvi~yv~---PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~---~~~fV 165 (383)
.+-. .|+|...+|.+. .++|+++.+- +.-|.| +.+....|.++++-.+-.+.+.+..++ +++.|
T Consensus 83 h~h~~~~~~~~~~a~~~----~~~~~i~t~H~~~~~~~~~-----~~~~~~~~~~i~~S~~~~~~~~~~~~~~~~ki~vI 153 (355)
T cd03819 83 HARSRAPAWSAYLAARR----TRPPFVTTVHGFYSVNFRY-----NAIMARGDRVIAVSNFIADHIRENYGVDPDRIRVI 153 (355)
T ss_pred EECCCCHHHHHHHHHHH----CCCCEEEEECCCCCHHHHH-----HHHHHHCCEEEEECHHHHHHHHHHHCCCHHHEEEE
T ss_conf 97786449999999985----3997899967877406799-----99997279899945899999999739987899997
Q ss_pred CCCCCC-CCCC----CCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCC----
Q ss_conf 882112-2100----1355888976187655650599853874301230511189998764027351262016633----
Q gi|254780767|r 166 GHPLSS-SPSI----LEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSS---- 236 (383)
Q Consensus 166 GHPl~d-~~~~----~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~---- 236 (383)
-|++-. .+.. .......+.+.+..++.+ +.++-| |-.+ .+....+++++..+.++.|+.++++.....
T Consensus 154 ~ngid~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~i~~vG-Rl~~-~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~ 230 (355)
T cd03819 154 PRGVDLDRFDPGAVPPERILALAREWPLPKGKP-VILLPG-RLTR-WKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRF 230 (355)
T ss_pred CCCCCHHHCCCCCCCHHHHHHHHHHCCCCCCCE-EEEEEC-CCCC-CCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHH
T ss_conf 887565423877787788999998628999987-999961-6654-4576999999999986489979999707864168
Q ss_pred HHHHHHHHHHHCCCCCEEEEE--CCCCHHHHHHHHHHHCCC------HHHHHHHHHHCCCEEEECCCCCCEEEEEECCCC
Q ss_conf 688999999604888505520--552035788763552331------156688876275302540577410000102467
Q gi|254780767|r 237 QENLVRCIVSKWDISPEIIID--KEQKKQVFMTCNAAMAAS------GTVILELALCGIPVVSIYKSEWIVNFFIFYIKT 308 (383)
Q Consensus 237 ~~~~~~~~~~~~~~~~~i~~~--~~~~~~~l~~sd~ai~~S------GTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~ 308 (383)
....+.......++...|... .++..++++.||+.+.+| |.+.+|++.+|+| ||++..+.+
T Consensus 231 ~~~~~~~~~~~~~l~~~v~f~G~~~d~~~~~~~adi~v~pS~~~Egf~~vllEAma~G~P-vV~s~~gg~---------- 299 (355)
T cd03819 231 YYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRP-VIASDHGGA---------- 299 (355)
T ss_pred HHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCC-EEEECCCCC----------
T ss_conf 999999999981997628865762146899874032558877710000789999986998-999089994----------
Q ss_pred CCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
Q ss_conf 6102302440784261242054898999999999844-989999999999999
Q gi|254780767|r 309 WTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQ-DTLQRRAMLHGFENL 360 (383)
Q Consensus 309 ~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~-d~~~r~~~~~~~~~~ 360 (383)
+.++.+.+ .- ++-+..+++.+++.+.++++ |++.|+++-++.++-
T Consensus 300 -----~eii~~~~-~G-~l~~~~d~~~l~~~i~~~l~~~~~~r~~~~~~ar~~ 345 (355)
T cd03819 300 -----RETVRPGE-TG-LLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMC 345 (355)
T ss_pred -----HHHCCCCC-CE-EEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf -----76615899-78-998899999999999999869999999999999999
No 29
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.58 E-value=1.6e-11 Score=95.94 Aligned_cols=319 Identities=17% Similarity=0.160 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEEC--CHH--HH--HCCCEEE-ECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHC--CC
Q ss_conf 7899999999997389983999971--789--99--4788065-04445311013674664599999999998610--01
Q gi|254780767|r 16 DLLAGDLIKSLKEMVSYPINLVGVG--GPS--LQ--KEGLVSL-FDFSELSVIGIMQVVRHLPQFIFRINQTVELI--VS 86 (383)
Q Consensus 16 D~~~a~li~~Lk~~~~~~~~~~giG--G~~--m~--~~G~~~~-~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i--~~ 86 (383)
..|...|.++|.++ +.++.++.-. +.. .. ..|+..+ .+......+.--+...++..+ ...+.+.+ ..
T Consensus 24 e~~v~~La~~L~~~-GH~V~V~t~~~~~~~~~~~~~~~gv~v~rl~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~ 99 (398)
T cd03800 24 NVYVLELARALARL-GHEVDIFTRRIDDALPPIVELAPGVRVVRVPAGPAEYLPKEELWPYLDEF---ADDLLRFLRREG 99 (398)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHH---HHHHHHHHHHHC
T ss_conf 99999999999986-99699997247778888068249869999557885433277778789999---999999999838
Q ss_pred CCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEC--------CCCCCCCC---CCH---HHHHHHHHHHCCCCCCCHH
Q ss_conf 288868985117765799998663013463111100--------22110036---635---5799999864015677422
Q gi|254780767|r 87 SKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVC--------PSVWAWRE---GRA---RKMCAYINQVISILPFEKE 152 (383)
Q Consensus 87 ~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~--------PqvWAWr~---~R~---k~~~~~~d~~~~ifpFE~~ 152 (383)
.+||+|..=++.+ ++ ++..+++. .++|+++-.= ...+.|.. .|. +..-+.+|++++.-+++.+
T Consensus 100 ~~pDvIH~h~~~~-~~-~~~~~~~~-~~ip~V~t~H~l~~~~~~~~~~~~~~~~~~r~~~e~~~~~~ad~via~S~~~~~ 176 (398)
T cd03800 100 GRPDLIHAHYWDS-GL-VALLLARR-LGIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLRAADRVIASTPQEAE 176 (398)
T ss_pred CCCCEEEECCCCH-HH-HHHHHHHH-HCCCEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCEEEECCHHHHH
T ss_conf 9988899888407-89-99999997-199999963751144433202355423478999999999849999987999999
Q ss_pred HHHCCCCC---CEEECCCCC-CCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCE
Q ss_conf 32002553---147638821-12210013558889761876556505998538743012305111899987640273512
Q gi|254780767|r 153 VMQRLGGP---PTTFVGHPL-SSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFR 228 (383)
Q Consensus 153 ~f~k~~~~---~~~fVGHPl-~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~ 228 (383)
...+..+. +++.+-|-+ .+.+.+.......+.+.+..+++++|+ +-| |-. -.+.++.+++++..+.+.+++.+
T Consensus 177 ~~~~~~~~~~~~i~vI~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~i~-~vG-Rl~-~~Kg~~~li~A~~~l~~~~~~~~ 253 (398)
T cd03800 177 ELYSLYGAYPRRIRVVPPGVDLERFTPYGRAEARRARLLRDPDKPRIL-AVG-RLD-PRKGIDTLIRAYAELPELRERAN 253 (398)
T ss_pred HHHHHHCCCCCCEEEECCCCCHHHCCCCCCHHHHHHHHCCCCCCCEEE-EEC-CCC-HHCCHHHHHHHHHHHHHHCCCCE
T ss_conf 999972999022899769867744388980589998608998994899-982-896-02098999999999887789968
Q ss_pred EEECCCCC------HHHHHHHHHHHCCCCCEEEEEC----CCCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEEC
Q ss_conf 62016633------6889999996048885055205----52035788763552331-----156688876275302540
Q gi|254780767|r 229 FSLVTVSS------QENLVRCIVSKWDISPEIIIDK----EQKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIY 293 (383)
Q Consensus 229 ~~i~~~~~------~~~~~~~~~~~~~~~~~i~~~~----~~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Y 293 (383)
+++...+. .....+...+..+....+.+.. ++..++|+.||+.+..| |.+.||++.+|+| ||++
T Consensus 254 l~ivGg~~~~~~~~~~~~~~~~~~~~~l~~~V~f~G~~~~~~~~~~~~~adv~v~pS~~E~fgl~~lEAma~G~P-vIas 332 (398)
T cd03800 254 LVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPALYEPFGLTALEAMACGLP-VVAT 332 (398)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHCCCC-EEEC
T ss_conf 999968876531345999999999759987499889899899999998578887545133221489999982999-9993
Q ss_pred CCCCCEEEEEECCCCCCEEEEHHHCCCC---CCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHC
Q ss_conf 5774100001024676102302440784---26124205489899999999984498999999999999-999838
Q gi|254780767|r 294 KSEWIVNFFIFYIKTWTCALPNLIVDYP---LVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFEN-LWDRMN 365 (383)
Q Consensus 294 k~~~lt~~i~~lik~~~i~LpNii~~~~---ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~-~~~~Lg 365 (383)
..+.+... +.+.+ ++| .-+++.+++.+.++++|++.++++-++.++ +.++..
T Consensus 333 ~~gg~~e~---------------v~~g~~G~l~~-----~~d~~~la~ai~~ll~d~~~~~~~g~~ar~~~~~~fs 388 (398)
T cd03800 333 AVGGPRDI---------------VVDGVTGLLVD-----PRDPEALAAALRRLLTDPALRRRLSRAGLRRARARYT 388 (398)
T ss_pred CCCCCHHH---------------HCCCCEEEEEC-----CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 89980777---------------41797189978-----9999999999999977999999999999999998689
No 30
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.58 E-value=4.5e-13 Score=106.25 Aligned_cols=322 Identities=17% Similarity=0.158 Sum_probs=179.1
Q ss_pred EEEEEECC----C-CHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHH
Q ss_conf 59999768----2-147899999999997389983999971789994788065044453110136746645999999999
Q gi|254780767|r 5 KIAVIAGE----I-SGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQ 79 (383)
Q Consensus 5 ki~i~aGE----~-SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~ 79 (383)
||.+++.+ . ....+..+|.++|.++ +.++.+..-++..-...... .........-. ...+.........
T Consensus 1 kIl~i~~~f~P~~GG~e~~~~~la~~L~~~-Gh~V~v~t~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~ 74 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRAR-GHEVLVIAPGPFRESEGPAR-VVPVPSVPLPG----YPEIRLALPPRRR 74 (364)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCCC-EEEEEEEECCC----CCCCEECCCHHHH
T ss_conf 989993888999884999999999999977-99899997899765555663-46786674688----8763002032999
Q ss_pred HHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEC---CCCCCC--CCCC-------HHHHHHHHHHHCCCC
Q ss_conf 9861001288868985117765799998663013463111100---221100--3663-------557999998640156
Q gi|254780767|r 80 TVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVC---PSVWAW--REGR-------ARKMCAYINQVISIL 147 (383)
Q Consensus 80 ~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~---PqvWAW--r~~R-------~k~~~~~~d~~~~if 147 (383)
+.+.+++.+||+|.+-+ |++--..|..+.+. .++|++...- |+.+.. +.+. .+.+-+.+|.+++.=
T Consensus 75 ~~~~~~~~~pDiIh~~~-~~~~~~~a~~~~~~-~~ip~i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~S 152 (364)
T cd03814 75 VRRLLDAFAPDVVHIAT-PGPLGLAALRAARR-LGIPVVTSYHTDFPEYLRYYGLGPLSWLAWAYLRWFHNRADRVLVPS 152 (364)
T ss_pred HHHHHHHCCCCEEEECC-CCHHHHHHHHHHHH-CCCCEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 99999865999999878-41678999999997-59978999747648887760320568999999999985079999899
Q ss_pred CCCHHHHHCCCCCCEEECCCCC-CCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCC
Q ss_conf 7742232002553147638821-122100135588897618765565059985387430123051118999876402735
Q gi|254780767|r 148 PFEKEVMQRLGGPPTTFVGHPL-SSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPF 226 (383)
Q Consensus 148 pFE~~~f~k~~~~~~~fVGHPl-~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~ 226 (383)
++..+...+...-++..+.|.+ .+.+.+.......++..+ . +.+.+.++-| |-.. .+.+..+++++..+.+ .++
T Consensus 153 ~~~~~~~~~~~~~~~~vi~nGvd~~~f~p~~~~~~~~~~~~-~-~~~~~i~~vG-rl~~-~Kg~~~ll~a~~~l~~-~~~ 227 (364)
T cd03814 153 PSLADELRARGFRRVRLWPRGVDTELFHPRRRDEALRARLG-P-PDRPVLLYVG-RLAP-EKNLEALLDADLPLRR-RPP 227 (364)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCHHHCCCCCCCHHHHHHCC-C-CCCCEEEEEE-CCCC-CCCHHHHHHHHHHHHC-CCC
T ss_conf 99999998509988899689616988487543266653026-8-9983899964-5755-5789999999997300-588
Q ss_pred CEEEECCCCCHHHHHHHHHHHCCCCCEEEE----ECCCCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCC
Q ss_conf 126201663368899999960488850552----0552035788763552331-----1566888762753025405774
Q gi|254780767|r 227 FRFSLVTVSSQENLVRCIVSKWDISPEIII----DKEQKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEW 297 (383)
Q Consensus 227 ~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~ 297 (383)
+++++......++.++. ... ++.+ ..++..+.++.||+.+.+| |.+.+|++.+|+|.| +...+.
T Consensus 228 ~~l~ivG~G~~~~~l~~----~~~--~v~f~G~~~~~el~~~~~~adi~v~pS~~E~fg~~~lEAma~G~PvI-~s~~gg 300 (364)
T cd03814 228 VRLVIVGDGPARARLEA----RYP--NVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVV-APDAGG 300 (364)
T ss_pred EEEEEECCCCCHHHHHH----CCC--CEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEE-ECCCCC
T ss_conf 59999847633999985----189--87990789989999999824756788653457657999998399899-958997
Q ss_pred CEEEEEECCCCCCEEEEHHHCCCC---CCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 100001024676102302440784---261242054898999999999844989999999999999998389
Q gi|254780767|r 298 IVNFFIFYIKTWTCALPNLIVDYP---LVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNT 366 (383)
Q Consensus 298 lt~~i~~lik~~~i~LpNii~~~~---ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~ 366 (383)
+.. ++-+.+ ++| .-+++.+++++..+++|++.|++|-++.++..++...
T Consensus 301 ~~E---------------iv~~~~~G~l~~-----~~d~~~la~~i~~l~~~~~~~~~mg~~ar~~~~~~~w 352 (364)
T cd03814 301 PAD---------------IVTDGENGLLVE-----PGDAEAFAAALAALLADPELRRRMAARARAEAERRSW 352 (364)
T ss_pred HHH---------------HHCCCCCEEEEC-----CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCH
T ss_conf 488---------------831798289979-----9999999999999976999999999999999996899
No 31
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.58 E-value=2e-12 Score=101.91 Aligned_cols=324 Identities=16% Similarity=0.199 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCC---EEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHH--CCCCCCC
Q ss_conf 7899999999997389983999971789994788---0650444531101367466459999999999861--0012888
Q gi|254780767|r 16 DLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGL---VSLFDFSELSVIGIMQVVRHLPQFIFRINQTVEL--IVSSKPD 90 (383)
Q Consensus 16 D~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~---~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~--i~~~~Pd 90 (383)
..+.-.|+++|.++ +.++.+...+...-..... ..............................+.+. ....+||
T Consensus 17 e~~~~~la~~L~~~-G~~V~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D 95 (377)
T cd03798 17 GIFVKELARALAKR-GVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAARALLKLLKLKRFRPD 95 (377)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEECCCCCCCHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999977-99699995379875312312575200034454554443310466778999999999997469986
Q ss_pred EEEEECHHHHHHHHHHHHHHHCCCCCCEEEE-CCCCCCCCCCC-----HHHHHHHHHHHCCCCCCCHHHHHCCC--CCCE
Q ss_conf 6898511776579999866301346311110-02211003663-----55799999864015677422320025--5314
Q gi|254780767|r 91 VLLIVDNPDFTHRVAKRVRKKMPNLPIINYV-CPSVWAWREGR-----ARKMCAYINQVISILPFEKEVMQRLG--GPPT 162 (383)
Q Consensus 91 ~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv-~PqvWAWr~~R-----~k~~~~~~d~~~~ifpFE~~~f~k~~--~~~~ 162 (383)
+|..- ++-+..-++..+++. .++|+++.+ ...+|.|...+ .+..-+..|+++++-+...+.+.+.. +-++
T Consensus 96 vI~~~-~~~~~~~~~~~~~~~-~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~~~~~~~i 173 (377)
T cd03798 96 LIHAH-FAYPDGFAAALLKRK-LGIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSEALADELKALGIDPEKV 173 (377)
T ss_pred EEEEC-CCCHHHHHHHHHHHH-CCCCEEEEECCCHHHHCCCCHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHCCCCCCE
T ss_conf 89978-840679999999997-3998899967741431023168999999999858999988989999999858996559
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHH
Q ss_conf 76388211221001355888976187655650599853874301230511189998764027351262016633688999
Q gi|254780767|r 163 TFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVR 242 (383)
Q Consensus 163 ~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~ 242 (383)
..+.|.+ |...............+...++ .+.++-|. -.+ .+.+..+++++..+.++++++++++.......+.++
T Consensus 174 ~vi~ngi-d~~~f~~~~~~~~~~~~~~~~~-~~i~~~Gr-l~~-~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~ 249 (377)
T cd03798 174 TVIPNGV-DTERFSPADRAEARKLGLPEDK-KVILFVGR-LVP-RKGIDYLIEALARLLKKRPDVHLVIVGDGPLREALE 249 (377)
T ss_pred EEECCCC-CHHHCCCCCHHHHHHHCCCCCC-EEEEEEEE-CCC-CCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHH
T ss_conf 9988975-7875498877789860899998-59999824-520-018289999999988748885224326827888999
Q ss_pred HHHHHCCCCCEEEEE----CCCCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEE
Q ss_conf 999604888505520----552035788763552331-----15668887627530254057741000010246761023
Q gi|254780767|r 243 CIVSKWDISPEIIID----KEQKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCAL 313 (383)
Q Consensus 243 ~~~~~~~~~~~i~~~----~~~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~L 313 (383)
...++.++..+|... .++..+.++.||+.+..| |.+.+|++.+|+| ||+...+.+.
T Consensus 250 ~~~~~~~l~~~v~~~g~v~~~~~~~~~~~adv~v~pS~~E~~~~~~lEama~G~P-vI~~~~gg~~-------------- 314 (377)
T cd03798 250 ALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLP-VVATDVGGIP-------------- 314 (377)
T ss_pred HHHHHCCCCCEEEECCCEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-EEECCCCCHH--------------
T ss_conf 9988618873698605210010101333377413785576512558999975997-9995899869--------------
Q ss_pred EHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 0244078426124205489899999999984498999999999999999838
Q gi|254780767|r 314 PNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMN 365 (383)
Q Consensus 314 pNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg 365 (383)
.++-+..- = ++-+.-+++.+++.+.++++|+..+ ...++.+.+.++..
T Consensus 315 -e~i~~~~~-G-~~~~~~~~~~l~~~i~~l~~~~~~~-~~~~~~~~~~~~fs 362 (377)
T cd03798 315 -EIITDGEN-G-LLVPPGDPEALAEAILRLLADPWLR-LGRAARRRVAERFS 362 (377)
T ss_pred -HHHCCCCE-E-EEECCCCHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHCC
T ss_conf -98517974-9-9979999999999999998799999-99999999998699
No 32
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.55 E-value=6.7e-12 Score=98.50 Aligned_cols=333 Identities=15% Similarity=0.176 Sum_probs=182.8
Q ss_pred EEEEEECCC-----CHHHHHHHHHHHHHHHCCCCEEEEEEC--CHHHHH---------CCCEEE-ECHHHCCEEEHHHHH
Q ss_conf 599997682-----147899999999997389983999971--789994---------788065-044453110136746
Q gi|254780767|r 5 KIAVIAGEI-----SGDLLAGDLIKSLKEMVSYPINLVGVG--GPSLQK---------EGLVSL-FDFSELSVIGIMQVV 67 (383)
Q Consensus 5 ki~i~aGE~-----SGD~~~a~li~~Lk~~~~~~~~~~giG--G~~m~~---------~G~~~~-~~~~~l~v~G~~evl 67 (383)
||++++.+- ++..+...|.++|.++ +.++.+..-. .+.... .|++.. ++.....-.+...-+
T Consensus 1 KIlii~~~fpP~~gG~~~~~~~la~~L~~~-Gh~V~v~t~~~~~~~~~~~~~~~~~~~~gi~v~r~~~~~~~~~~~~~~~ 79 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKR-GHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKKNGLLKRL 79 (394)
T ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHH
T ss_conf 989991777898982999999999999977-9979999547877643235666446648859999337766775278899
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEC---CC----CCCCCCCC--H-----
Q ss_conf 6459999999999861001288868985117765799998663013463111100---22----11003663--5-----
Q gi|254780767|r 68 RHLPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVC---PS----VWAWREGR--A----- 133 (383)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~---Pq----vWAWr~~R--~----- 133 (383)
.....+... ..........+||+|+....|.|....+..+++. .++|+++.+- |+ .+..+.++ .
T Consensus 80 ~~~~~~~~~-~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~-~~~p~v~~~hd~~p~~~~~~~~~~~~~~~~~~~~~ 157 (394)
T cd03794 80 LNYLSFALS-ALLALLKRRRRPDVIIATSPPLLIALAALLLARL-KGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLRK 157 (394)
T ss_pred HHHHHHHHH-HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 999999999-9999998558998899917847889999999986-39969999687446789983674444489999999
Q ss_pred --HHHHHHHHHHCCCCCCCHHHHHCCCCC---CEEECCCCCCC-CCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHH
Q ss_conf --579999986401567742232002553---14763882112-210013558889761876556505998538743012
Q gi|254780767|r 134 --RKMCAYINQVISILPFEKEVMQRLGGP---PTTFVGHPLSS-SPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIY 207 (383)
Q Consensus 134 --k~~~~~~d~~~~ifpFE~~~f~k~~~~---~~~fVGHPl~d-~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~ 207 (383)
+.+-+..|++++.=+...+.+.+. +. ++..+-|..-. .+... ............++. .+.++-|+ -.+ .
T Consensus 158 ~~~~~~~~ad~vi~~S~~~~~~~~~~-~~~~~~i~vipngvd~~~~~~~-~~~~~~~~~~~~~~~-~~i~~~Gr-l~~-~ 232 (394)
T cd03794 158 LERLIYRRADAIVVISPGMREYLVRR-GVPPEKISVIPNGVDLELFKPP-PADESLRKELGLDDK-FVVLYAGN-IGR-A 232 (394)
T ss_pred HHHHHHHHCCEEEECCHHHHHHHHHH-CCCCCCEEEEECCCCHHHCCCC-CCHHHHHHHCCCCCC-EEEEEEEE-CCC-C
T ss_conf 99999984899997729999999984-8992309999476257652777-504777874268998-59999611-100-0
Q ss_pred HHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEE----CCCCHHHHHHHHHHHCC-----C-HH
Q ss_conf 30511189998764027351262016633688999999604888505520----55203578876355233-----1-15
Q gi|254780767|r 208 KILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEIIID----KEQKKQVFMTCNAAMAA-----S-GT 277 (383)
Q Consensus 208 ~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~l~~sd~ai~~-----S-GT 277 (383)
+.++.++++++.+. ..|++++++.......+.++......+.+ +|.+. .++..+.++.||+.+.. + |.
T Consensus 233 kg~~~li~a~~~l~-~~~~~~l~ivG~G~~~~~l~~~~~~~~~~-~V~~~G~v~~~~~~~~~~~adi~v~p~~~~~~~~~ 310 (394)
T cd03794 233 QGLDTLLEAAALLK-DRPDIRFLIVGDGPEKEELKELAKALGLD-NVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEG 310 (394)
T ss_pred CCCHHHHHHHHHHC-CCCCEEEEEECCCHHHHHHHHHHHHCCCC-EEEECCCCCCCHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf 36379999999745-58985999956851678999999981999-49981630461367787429699992777544577
Q ss_pred H----HHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 6----688876275302540577410000102467610230244078426124205489899999999984498999999
Q gi|254780767|r 278 V----ILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAM 353 (383)
Q Consensus 278 a----TLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~ 353 (383)
+ .+|++.+|+|.| +...+.+... +-+... -++-+.-+++.+++.+..+++|++.|++|
T Consensus 311 ~~P~kllEAma~G~PVV-~s~~gg~~e~---------------i~~~~~--G~l~~~~d~~~la~~i~~ll~d~~~~~~~ 372 (394)
T cd03794 311 VSPSKLFEYMAAGKPVL-ASVDGESAEL---------------VEEAGA--GLVVPPGDPEALAAAILELLDDPEERAEM 372 (394)
T ss_pred CCHHHHHHHHHCCCCEE-EECCCCHHHH---------------EECCCE--EEEECCCCHHHHHHHHHHHHCCHHHHHHH
T ss_conf 35689999998499799-9589980776---------------121880--89977999999999999997799999999
Q ss_pred HHHHHHH-HHHHC
Q ss_conf 9999999-99838
Q gi|254780767|r 354 LHGFENL-WDRMN 365 (383)
Q Consensus 354 ~~~~~~~-~~~Lg 365 (383)
-++.++. .++..
T Consensus 373 ~~~ar~~~~~~fs 385 (394)
T cd03794 373 GENGRRYVEEKFS 385 (394)
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999998589
No 33
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.53 E-value=5e-12 Score=99.30 Aligned_cols=325 Identities=16% Similarity=0.159 Sum_probs=182.9
Q ss_pred EEEEEECC----CCH--HHHHHHHHHHHHHHCCCCEEEEEECCHHHH----HCCCEEEECHHHCCEEE--HHHHHHHH-H
Q ss_conf 59999768----214--789999999999738998399997178999----47880650444531101--36746645-9
Q gi|254780767|r 5 KIAVIAGE----ISG--DLLAGDLIKSLKEMVSYPINLVGVGGPSLQ----KEGLVSLFDFSELSVIG--IMQVVRHL-P 71 (383)
Q Consensus 5 ki~i~aGE----~SG--D~~~a~li~~Lk~~~~~~~~~~giGG~~m~----~~G~~~~~~~~~l~v~G--~~evl~~~-~ 71 (383)
||.+++.+ ..| ..+...|.++|.++ +.++.+...+..... ..+.............. ........ .
T Consensus 1 rIl~vt~~~pP~~~GG~e~~~~~la~~L~~~-Gh~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKR-GHEVAVLTAGEDPPRQDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDY 79 (359)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 9999948648999764999999999999977-998999955798766421357617970476420035431015677642
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCH
Q ss_conf 99999999986100128886898511776579999866301346311110022110036635579999986401567742
Q gi|254780767|r 72 QFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEK 151 (383)
Q Consensus 72 ~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~ 151 (383)
........+.+.+...+||+|..=++.++.....+.+++. ++|+++-+- ..| |-..|...+.+..|.++++-.+-.
T Consensus 80 ~~~~~~~~~~~~~~~~~pDivh~h~~~~~~~~~~~~~~~~--~~p~v~t~h-~~~-~~~~~~~~~~~~~d~vi~~S~~~~ 155 (359)
T cd03823 80 DNPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARDR--GIPIVLTLH-DYW-LICPRQGLFKKGGDAVIAPSRFLL 155 (359)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHC--CCCEEEEEC-CHH-HCCCHHHHHHCCCCEEEECCHHHH
T ss_conf 2789999999999874999999888317679999999984--998999972-221-106177887458999999999999
Q ss_pred HHHHCCC--CCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEE
Q ss_conf 2320025--53147638821122100135588897618765565059985387430123051118999876402735126
Q gi|254780767|r 152 EVMQRLG--GPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRF 229 (383)
Q Consensus 152 ~~f~k~~--~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~ 229 (383)
+.|.+.. .-+++.+-|++-... +.......++++.+.++-| |-.+ .+....+++++..+. .+++++
T Consensus 156 ~~~~~~~~~~~~i~vI~ngvd~~~--------~~~~~~~~~~~~~~i~~vG-Rl~~-~Kg~~~li~a~~~l~--~~~~~l 223 (359)
T cd03823 156 DRYVANGLFAEKISVIRNGIDLDR--------AKRPRRAPPGGRLRFGFIG-QLTP-HKGVDLLLEAFKRLP--RGDIEL 223 (359)
T ss_pred HHHHHHCCCCCCEEEECCCCCHHH--------CCCCCCCCCCCCEEEEEEC-CCCC-CCCHHHHHHHHHHCC--CCCCEE
T ss_conf 999980899323899889868454--------2743334567874999958-8976-259999999998555--578289
Q ss_pred EECCCCCHHHHHHHHHHHCCCCCEEEE----ECCCCHHHHHHHHHHHCCC------HHHHHHHHHHCCCEEEECCCCCCE
Q ss_conf 201663368899999960488850552----0552035788763552331------156688876275302540577410
Q gi|254780767|r 230 SLVTVSSQENLVRCIVSKWDISPEIII----DKEQKKQVFMTCNAAMAAS------GTVILELALCGIPVVSIYKSEWIV 299 (383)
Q Consensus 230 ~i~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~~~~l~~sd~ai~~S------GTaTLE~al~g~P~IV~Yk~~~lt 299 (383)
++.............. .....+.. ..++..+.++.||+.+..| |.+.+|++.+|+|.| +...+
T Consensus 224 ~i~G~g~~~~~~~~~~---~~~~~v~f~G~~~~~~~~~~~~~adi~v~pS~~~E~fg~~~lEAma~G~PvI-as~~g--- 296 (359)
T cd03823 224 VIVGNGLELEEESYEL---EGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVI-ASDIG--- 296 (359)
T ss_pred EEECCCCHHHHHHHHH---HCCCCCEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCEE-ECCCC---
T ss_conf 9977860568999997---2577648806567899999998657365677565777479999998299899-88899---
Q ss_pred EEEEECCCCCCEEEEHHHCCCC---CCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 0001024676102302440784---2612420548989999999998449899999999999999983899998999999
Q gi|254780767|r 300 NFFIFYIKTWTCALPNLIVDYP---LVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAE 376 (383)
Q Consensus 300 ~~i~~lik~~~i~LpNii~~~~---ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~ 376 (383)
|++.++-+.. ++| .-+++.+++++.++++|++.|++|.++. +++. ...++|.+
T Consensus 297 ------------g~~e~i~~g~~G~lv~-----~~d~~~la~ai~~ll~d~~~~~~~~~~~---~~~~----s~~~~a~~ 352 (359)
T cd03823 297 ------------GMAELVRDGVNGLLFP-----PGDAEDLAAALERLIDDPDLLERLRAGI---EPPR----SIEDQAEE 352 (359)
T ss_pred ------------CCHHHHCCCCCEEEEC-----CCCHHHHHHHHHHHHCCHHHHHHHHHHH---HHCC----CHHHHHHH
T ss_conf ------------8175603798679989-----9999999999999984999999999999---9747----99999999
Q ss_pred H
Q ss_conf 9
Q gi|254780767|r 377 I 377 (383)
Q Consensus 377 ~ 377 (383)
.
T Consensus 353 ~ 353 (359)
T cd03823 353 Y 353 (359)
T ss_pred H
T ss_conf 9
No 34
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.53 E-value=1.3e-11 Score=96.60 Aligned_cols=323 Identities=18% Similarity=0.155 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 78999999999973899839999717899947880650444531101367466459999999999861001288868985
Q gi|254780767|r 16 DLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIV 95 (383)
Q Consensus 16 D~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~i 95 (383)
..|...|.++|.++ +.++.+...+...-. .......... +.-....... ...+.+.++..+||++++-
T Consensus 16 ~~~~~~La~~L~~~-Gh~V~v~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~----~~~~~~~i~~~~~Dvvh~~ 83 (366)
T cd03822 16 ATFTTDLVNALSAR-GPDVLVVSVAALYPS------LLYGGEQEVV-RVIVLDNPLD----YRRAARAIRLSGPDVVVIQ 83 (366)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEECCCCCCC------CCCCCCCCEE-EECCCCCCHH----HHHHHHHHHHCCCCEEEEE
T ss_conf 99999999999867-998999958888875------4446776416-7603667325----9999999985399999993
Q ss_pred C-HHHH---HHHHHHHHHHHCCCCCCEEEE---CC-CCCCCCCCCHHHHHHHHHHHCCCCCCC-HHHHHCCCCCCEEECC
Q ss_conf 1-1776---579999866301346311110---02-211003663557999998640156774-2232002553147638
Q gi|254780767|r 96 D-NPDF---THRVAKRVRKKMPNLPIINYV---CP-SVWAWREGRARKMCAYINQVISILPFE-KEVMQRLGGPPTTFVG 166 (383)
Q Consensus 96 D-~pgF---nl~lak~lkk~~~~ipvi~yv---~P-qvWAWr~~R~k~~~~~~d~~~~ifpFE-~~~f~k~~~~~~~fVG 166 (383)
. +|-| ....+..+.+ ..++|++.-+ .+ .-|.|..+-.+.+.+..|.+++.-... .++.......+++.+-
T Consensus 84 ~~~~~~~~~~~~~~~~~~~-~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~~~~~~i~vIp 162 (366)
T cd03822 84 HEYGIFGGEAGLYLLLLLR-GLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMSSELLRALLLRAYPEKIAVIP 162 (366)
T ss_pred CCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHCCCCCEEEEC
T ss_conf 6533210668999999998-559989999777765542277999999999867999995799999998646987399967
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCC--CC---HHHHH
Q ss_conf 82112210013558889761876556505998538743012305111899987640273512620166--33---68899
Q gi|254780767|r 167 HPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTV--SS---QENLV 241 (383)
Q Consensus 167 HPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~--~~---~~~~~ 241 (383)
|+...... . .....+.....+++++ .++.| |-.+ .+.+..+++++..+.+++|+.++++... ++ .....
T Consensus 163 ngv~~~~~--~-~~~~~~~~~~~~~~~~-il~~G-rl~~-~Kg~~~li~A~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~ 236 (366)
T cd03822 163 HGVPDPPA--E-PPESLKALGGLDGRPV-LLTFG-LLRP-YKGLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRGEA 236 (366)
T ss_pred CCCCCCCC--C-CHHHHHHHCCCCCCEE-EEEEE-CCCC-CCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 99875455--8-8677887458999859-99985-3405-5485999999999887689859999958987426678999
Q ss_pred HHHHHHCCCCCEEEE-----ECCCCHHHHHHHHHHHCCC-----HH--HHHHHHHHCCCEEEECCCCCCEEEEEECCCCC
Q ss_conf 999960488850552-----0552035788763552331-----15--66888762753025405774100001024676
Q gi|254780767|r 242 RCIVSKWDISPEIII-----DKEQKKQVFMTCNAAMAAS-----GT--VILELALCGIPVVSIYKSEWIVNFFIFYIKTW 309 (383)
Q Consensus 242 ~~~~~~~~~~~~i~~-----~~~~~~~~l~~sd~ai~~S-----GT--aTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~ 309 (383)
+...++.++..+|.+ ..++....++.||+.+..| |+ +.+|++.+|+|.| +.+.+..... +.-.
T Consensus 237 ~~~~~~lgl~~~V~f~~g~v~~~~~~~~~~~adv~v~Ps~~e~~~~s~v~~EAma~G~PvV-at~~gg~~ev----~~~~ 311 (366)
T cd03822 237 YALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVI-STPVGHAEEV----LDGG 311 (366)
T ss_pred HHHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEE-EECCCCHHEE----ECCC
T ss_conf 9999973997655324788899999999995570305554665445699999997499899-9089974408----8399
Q ss_pred CEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 102302440784261242054898999999999844989999999999999998389999899999999986
Q gi|254780767|r 310 TCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAEIVLQV 381 (383)
Q Consensus 310 ~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~~ 381 (383)
-|+ ++ +.-+++.+++++..+++|++.|+++-++..+..+... -+++ |+..+++
T Consensus 312 -~G~--------lv-----~~~d~~~la~ai~~ll~d~~~r~~l~~~a~~~a~~~s----W~~i-a~~~~~l 364 (366)
T cd03822 312 -TGL--------LV-----PPGDPAALAEAIRRLLADPELAQALRARAREYARAMS----WERV-AERYLRL 364 (366)
T ss_pred -CEE--------EE-----CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC----HHHH-HHHHHHH
T ss_conf -689--------98-----9999999999999998799999999999999999799----9999-9999998
No 35
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.51 E-value=7.9e-11 Score=91.41 Aligned_cols=332 Identities=14% Similarity=0.124 Sum_probs=180.9
Q ss_pred CCCCH-HHHHHHHHHHHHHHCCCCEEEEEECC-----HHHH-HCCCEEEECHHHCCEEEH--HHHHHHHHHHHHH-HHHH
Q ss_conf 68214-78999999999973899839999717-----8999-478806504445311013--6746645999999-9999
Q gi|254780767|r 11 GEISG-DLLAGDLIKSLKEMVSYPINLVGVGG-----PSLQ-KEGLVSLFDFSELSVIGI--MQVVRHLPQFIFR-INQT 80 (383)
Q Consensus 11 GE~SG-D~~~a~li~~Lk~~~~~~~~~~giGG-----~~m~-~~G~~~~~~~~~l~v~G~--~evl~~~~~~~~~-~~~~ 80 (383)
|++.| ..|...|.++|.++ +.+++++.-+. +..+ ..|+... ++......|+ .+....+..+... .+..
T Consensus 17 gd~GG~e~~v~~La~~La~r-GheV~V~t~~~~~~~~~~~~~~~gv~v~-~~~~~p~~~~~~~~l~~~l~~~~~~~l~~~ 94 (405)
T TIGR03449 17 GDAGGMNVYILETATELARR-GIEVDIFTRATRPSQPPVVEVAPGVRVR-NVVAGPYEGLDKEDLPTQLCAFTGGVLRAE 94 (405)
T ss_pred CCCCCHHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCEEEECCCEEEE-EECCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99588699999999999978-9969999358887788846704984999-825786232456676999999999999999
Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEC------CCCCCCCCC-----C---HHHHHHHHHHHCCC
Q ss_conf 861001288868985117765799998663013463111100------221100366-----3---55799999864015
Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVC------PSVWAWREG-----R---ARKMCAYINQVISI 146 (383)
Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~------PqvWAWr~~-----R---~k~~~~~~d~~~~i 146 (383)
.+ .....+|++-.=++- .-.++..+++. .++|+++-.- ...|+++.. | -+.+-+..|.+++.
T Consensus 95 ~~-~~~~~~DvIH~h~~~--~~~~~~~~~~~-~~iP~V~t~H~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 170 (405)
T TIGR03449 95 AR-HEPGYYDLIHSHYWL--SGQVGWLLRDR-WGVPLVHTAHTLAAVKNAALADGDTPEPEARRIGEQQLVDNADRLIAN 170 (405)
T ss_pred HH-HCCCCCCEEEECCCC--HHHHHHHHHHH-CCCCEEEEECCHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHCCEEEEE
T ss_conf 98-568997689988710--78999999986-499989981441431312443266644199999999999748999995
Q ss_pred CCCCHHHHHCCCCC---CEEECCCCCC-CCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHH
Q ss_conf 67742232002553---1476388211-2210013558889761876556505998538743012305111899987640
Q gi|254780767|r 147 LPFEKEVMQRLGGP---PTTFVGHPLS-SSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVK 222 (383)
Q Consensus 147 fpFE~~~f~k~~~~---~~~fVGHPl~-d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~ 222 (383)
-+.+.+-+.+.-+. ++..+-|-+- +.+. ..++...+.+.+++.+.++ .++.| |-.+ .+.+..+++++..+.+
T Consensus 171 s~~~~~~l~~~~~~~~~ki~vi~nGvd~~~f~-p~~~~~~r~~~g~~~~~~~-il~vG-Rl~~-~Kg~~~li~A~~~l~~ 246 (405)
T TIGR03449 171 TDEEARDLVRHYDADPDRIDVVAPGADLERFR-PGDRATERARLGLPLDTKV-VAFVG-RIQP-LKAPDVLLRAVAELLD 246 (405)
T ss_pred CHHHHHHHHHHHCCCHHHEEEECCCCCCCEEC-CCCHHHHHHHCCCCCCCCE-EEEEC-CCCH-HHHHHHHHHHHHHHHH
T ss_conf 78999999998498867889977997703068-8885899997198989818-99955-8850-1148999999999998
Q ss_pred CCCCCEEEEC--CCC---CH--HHHHHHHHHHCCCCCEEEEE----CCCCHHHHHHHHHHHCCC-----HHHHHHHHHHC
Q ss_conf 2735126201--663---36--88999999604888505520----552035788763552331-----15668887627
Q gi|254780767|r 223 RNPFFRFSLV--TVS---SQ--ENLVRCIVSKWDISPEIIID----KEQKKQVFMTCNAAMAAS-----GTVILELALCG 286 (383)
Q Consensus 223 ~~~~~~~~i~--~~~---~~--~~~~~~~~~~~~~~~~i~~~----~~~~~~~l~~sd~ai~~S-----GTaTLE~al~g 286 (383)
+.|+..+.+. ..+ +. .+.++....+.++...+.+. .++..++|+.||+.+..| |.+.||++.+|
T Consensus 247 ~~p~~~l~~~v~Gg~~g~~~~~~~~l~~~~~~lgl~~~V~f~G~~~~~~~~~~~~~adv~v~PS~~E~fg~~~lEAma~G 326 (405)
T TIGR03449 247 RDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQACG 326 (405)
T ss_pred HCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHCC
T ss_conf 68998789999838887536569999999998288875986799889999999995787635566678884799999869
Q ss_pred CCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 53025405774100001024676102302440784261242054898999999999844989999999999999998389
Q gi|254780767|r 287 IPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNT 366 (383)
Q Consensus 287 ~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~ 366 (383)
+| ||+.+.+.+...+ -+..- =++-+..+++.+++++..+++|++.|+++-++..+..++...
T Consensus 327 ~P-VVas~~gg~~e~v---------------~~g~~--G~lv~~~d~~~la~ai~~ll~d~~~~~~l~~~~~~~~~~fsw 388 (405)
T TIGR03449 327 TP-VVAARVGGLPVAV---------------ADGET--GLLVDGHDPADWADALARLLDDPRTRIRMGAAAVEHAAGFSW 388 (405)
T ss_pred CC-EEEECCCCCCEEE---------------ECCCC--EEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCH
T ss_conf 99-9991799861125---------------37973--899798999999999999975999999999999999996999
Q ss_pred CCCH
Q ss_conf 9998
Q gi|254780767|r 367 KKPA 370 (383)
Q Consensus 367 ~~~a 370 (383)
+..+
T Consensus 389 ~~~a 392 (405)
T TIGR03449 389 AATA 392 (405)
T ss_pred HHHH
T ss_conf 9999
No 36
>PRK10307 predicted glycosyl transferase; Provisional
Probab=99.47 E-value=1.3e-09 Score=83.34 Aligned_cols=340 Identities=15% Similarity=0.118 Sum_probs=184.8
Q ss_pred CEEEEEECC----CCH-HHHHHHHHHHHHHHCCCCEEEEEE---------C-CHH------HHHCCCEEE-ECHHHCCEE
Q ss_conf 459999768----214-789999999999738998399997---------1-789------994788065-044453110
Q gi|254780767|r 4 LKIAVIAGE----ISG-DLLAGDLIKSLKEMVSYPINLVGV---------G-GPS------LQKEGLVSL-FDFSELSVI 61 (383)
Q Consensus 4 mki~i~aGE----~SG-D~~~a~li~~Lk~~~~~~~~~~gi---------G-G~~------m~~~G~~~~-~~~~~l~v~ 61 (383)
|||++++-+ .+| -.|..+|.++|.++ +.++.+..- + |.. =...|++.+ .+.---.--
T Consensus 1 MrIl~vs~~y~P~~~G~~~~~~~La~~L~~~-GheV~Vit~~p~~p~~~~~~~~~~~~~~~e~~~gv~v~R~p~~~~~~~ 79 (415)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAAR-GHEVRVITAPPYYPQWQVGEGYSAWRYRREERGGVTVWRCPLYVPKQP 79 (415)
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCEEEEEEECCCCCCC
T ss_conf 9899985848997887999999999999978-998999977998876655777666543113678889998304567884
Q ss_pred EHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEC---C-CCCCC------CCC
Q ss_conf 1367466459999999999861001288868985117765799998663013463111100---2-21100------366
Q gi|254780767|r 62 GIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVC---P-SVWAW------REG 131 (383)
Q Consensus 62 G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~---P-qvWAW------r~~ 131 (383)
+...-+.++..+.-...........++||+++..--+-|....+..+.+. .+.|.+..+. | ..+.+ +.+
T Consensus 80 ~~~~r~~~~~~f~~~~~~~~~~~~~~~pD~v~~~~p~~~~~~~~~~~~~~-~~~~~v~~~~d~~~~~~~~~g~l~~~~~~ 158 (415)
T PRK10307 80 SGLKRLLHLGSFALSSFPPLMAQRRWRPDRVIGVAPTLFCAPGARLLARL-SGARTWLHIQDYEVDAAFGLGLLGKGKGG 158 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHH-CCCCEEEEEEEEEHHHHHHHCCCCCCCCH
T ss_conf 08999999999999999999998476999899928778899999999996-29888999900211456651401124456
Q ss_pred CHH--------HHHHHHHHHCCCCCCCHHHHHCCCCC---CEEECCCCCC-CCCC--CCCCHHHHHHHCCCCCCCCEEEE
Q ss_conf 355--------79999986401567742232002553---1476388211-2210--01355888976187655650599
Q gi|254780767|r 132 RAR--------KMCAYINQVISILPFEKEVMQRLGGP---PTTFVGHPLS-SSPS--ILEVYSQRNKQRNTPSQWKKILL 197 (383)
Q Consensus 132 R~k--------~~~~~~d~~~~ifpFE~~~f~k~~~~---~~~fVGHPl~-d~~~--~~~~~~~~~~~~~~~~~~~~I~l 197 (383)
.+. .+-+..|.+.++=+.-.+..... |+ +++++-|-.= +.+. ...+....+++++++++++ +.+
T Consensus 159 ~~~~~~~~~e~~~~~~ad~v~~~S~~~~~~l~~~-g~~~~ki~vipNgvd~~~f~p~~~~~~~~~r~~~g~~~~~~-vvl 236 (415)
T PRK10307 159 KVARLATAFERSLLRRFDNVSTISRSMMNKAREK-GVAAEKVIFFPNWSDVARFQDVADADVDALRAQLGLPDGKK-IVL 236 (415)
T ss_pred HHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHH-CCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCE-EEE
T ss_conf 9999999999999985898997799999999982-89987099976815100037878520689999709999987-999
Q ss_pred EECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEE----CCCCHHHHHHHHHHHC
Q ss_conf 853874301230511189998764027351262016633688999999604888505520----5520357887635523
Q gi|254780767|r 198 LPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEIIID----KEQKKQVFMTCNAAMA 273 (383)
Q Consensus 198 lPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~l~~sd~ai~ 273 (383)
+-| |-.+ .+.+..+++++..+.. .|+++|++......++.++...+..++. ++.+. .++..++++.||+.+.
T Consensus 237 y~G-rl~~-~kg~~~li~A~~~l~~-~~~~~lvivG~G~~~~~L~~~a~~~gl~-~V~f~g~~~~e~l~~~~~~aDv~v~ 312 (415)
T PRK10307 237 YSG-NIGE-KQGLELVIDAAARLRD-RPDLIFVICGQGGGKARLEKMARCRGLR-NVHFLPLQPYDALPALLKMADCHLL 312 (415)
T ss_pred EEC-CCHH-HCCHHHHHHHHHHHHC-CCCEEEEEECCCCHHHHHHHHHHHCCCC-CEEECCCCCHHHHHHHHHHCCEEEE
T ss_conf 947-7601-1187999999998312-8986999968874089999999970998-3898188788999999984749997
Q ss_pred CC-----HHH----HHHHHHHCCCEEEECC-CCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHH
Q ss_conf 31-----156----6888762753025405-7741000010246761023024407842612420548989999999998
Q gi|254780767|r 274 AS-----GTV----ILELALCGIPVVSIYK-SEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERL 343 (383)
Q Consensus 274 ~S-----GTa----TLE~al~g~P~IV~Yk-~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~l 343 (383)
.| |.+ .+|++.+|+|.|..=. -+.+...+ +...-.| -++| .-+++.+++++..+
T Consensus 313 ps~~e~~~~v~Pskl~~~mA~G~PVva~~~~g~~~~~~v---~~~~~~G--------~~v~-----p~d~~~La~ai~~l 376 (415)
T PRK10307 313 PQKAGAADLVLPSKLTNMLASGRNVVATAEPGTELGQLC---ETFPGIG--------VCVP-----PEDVEALVAAIRQL 376 (415)
T ss_pred ECCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHE---EEECCEE--------EEEC-----CCCHHHHHHHHHHH
T ss_conf 044111234575799999866996899925887652012---7627808--------9978-----99999999999999
Q ss_pred HCCHHHHHHHHHHHHHHH-HHHCCC
Q ss_conf 449899999999999999-983899
Q gi|254780767|r 344 SQDTLQRRAMLHGFENLW-DRMNTK 367 (383)
Q Consensus 344 l~d~~~r~~~~~~~~~~~-~~Lg~~ 367 (383)
++|++.|++|-++.++.- +.+..+
T Consensus 377 l~d~~~~~~mg~~gr~~~~~~f~~e 401 (415)
T PRK10307 377 LALPKRRTALGAAAREYAERTLDRE 401 (415)
T ss_pred HCCHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 7799999999999999999977999
No 37
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.47 E-value=1.8e-11 Score=95.68 Aligned_cols=316 Identities=16% Similarity=0.108 Sum_probs=174.0
Q ss_pred CCH-HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 214-7899999999997389983999971789994788065044453110136746645999999999986100128886
Q gi|254780767|r 13 ISG-DLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDV 91 (383)
Q Consensus 13 ~SG-D~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~ 91 (383)
.+| ..|...|.++|.+. +.+..+....+..-.... ...............................+...++|+
T Consensus 14 ~gGi~ry~~~L~~~L~~~-g~~v~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 88 (365)
T cd03809 14 PTGIGRYARELLRALLKL-DPEEVLLLLPGAPGLLLL----PLRAALRLLLRLPRRLLWGLLFLLRAGDRLLLLLLGLDL 88 (365)
T ss_pred CCCHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCC----CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 996899999999999745-997799993586422111----112354101356653113343577888899998559999
Q ss_pred EEEECHHHHHHHHHHHHHHHCCCCCCE---E----EECCCCCCC-----CCCCHHHHHHHHHHHCCCCCCCHHHHHCCCC
Q ss_conf 898511776579999866301346311---1----100221100-----3663557999998640156774223200255
Q gi|254780767|r 92 LLIVDNPDFTHRVAKRVRKKMPNLPII---N----YVCPSVWAW-----REGRARKMCAYINQVISILPFEKEVMQRLGG 159 (383)
Q Consensus 92 vi~iD~pgFnl~lak~lkk~~~~ipvi---~----yv~PqvWAW-----r~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~ 159 (383)
+..-. +...+.+. .++|++ | +-.|+.+.| .....+...+..|+++|+=.+..+-+.+.-+
T Consensus 89 ~h~~~---~~~~~~~~-----~~~~~V~t~HD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~vS~~~~~~~~~~~~ 160 (365)
T cd03809 89 LHSPH---NTAPLLRL-----RGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEATKRDLLRYLG 160 (365)
T ss_pred EEECC---CHHHHHHH-----CCCCEEEEECCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHC
T ss_conf 99898---32655643-----59989999788506538200797789999999999999699999979999999999849
Q ss_pred ---CCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCC-C
Q ss_conf ---314763882112210013558889761876556505998538743012305111899987640273512620166-3
Q gi|254780767|r 160 ---PPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTV-S 235 (383)
Q Consensus 160 ---~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~-~ 235 (383)
-+++-+-|..-.................. .+.+. .++.|+-.. .++...++++...+.++.++.++++... .
T Consensus 161 ~~~~~i~vi~~gv~~~~~~~~~~~~~~~~~~~-~~~~~-il~vg~~~~--~K~~~~li~a~~~l~~~~~~~~lvivG~~~ 236 (365)
T cd03809 161 VPPDKIVVIPLGVDPRFRPPPAEAEVLRALYL-LPRPY-FLYVGTIEP--RKNLERLLEAFARLPAKGPDPKLVIVGKRG 236 (365)
T ss_pred CCHHHEEEECCCCCHHCCCCCCHHHHHHHHCC-CCCCE-EEEEECCCC--CCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 88589899815555110588742678887438-99988-999953645--579999999999988768993899977897
Q ss_pred CHHHHHHHHHHHCCCCCEEEEEC----CCCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEEEECC
Q ss_conf 36889999996048885055205----52035788763552331-----1566888762753025405774100001024
Q gi|254780767|r 236 SQENLVRCIVSKWDISPEIIIDK----EQKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNFFIFYI 306 (383)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~~li 306 (383)
.............+....|.... ++...+++.||+.+..| |-+.||++.+|+|. |+...+.+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~y~~ad~~v~PS~~EgfGl~~lEAma~G~Pv-i~s~~~~~~Ei----- 310 (365)
T cd03809 237 WLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPV-IASNISSLPEV----- 310 (365)
T ss_pred CCHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHCCCCE-EEECCCCCCEE-----
T ss_conf 417999999996599985899368798999999971774354143357896899999859989-99079987308-----
Q ss_pred CCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 67610230244078426124205489899999999984498999999999999999838
Q gi|254780767|r 307 KTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMN 365 (383)
Q Consensus 307 k~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg 365 (383)
+-+..+ ++ +.-+++.+++.+.++++|++.|+++.++..+..++..
T Consensus 311 ----------~g~~g~---~~-~p~d~~~la~~i~~ll~d~~~~~~~~~~~~~~~~~fs 355 (365)
T cd03809 311 ----------AGDAAL---YF-DPLDPEALAAAIERLLEDPALREELRERGLARAKRFS 355 (365)
T ss_pred ----------ECCCEE---EE-CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
T ss_conf ----------578379---98-9999999999999998799999999999999999699
No 38
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.46 E-value=1.9e-10 Score=88.93 Aligned_cols=330 Identities=16% Similarity=0.161 Sum_probs=171.1
Q ss_pred CEEEEEECCC---CHHHHHHHHHHHHHHHCCCCEEEEEECCHH------HHHCCCEEE--ECHHHCCEEEHHHHHHHHHH
Q ss_conf 4599997682---147899999999997389983999971789------994788065--04445311013674664599
Q gi|254780767|r 4 LKIAVIAGEI---SGDLLAGDLIKSLKEMVSYPINLVGVGGPS------LQKEGLVSL--FDFSELSVIGIMQVVRHLPQ 72 (383)
Q Consensus 4 mki~i~aGE~---SGD~~~a~li~~Lk~~~~~~~~~~giGG~~------m~~~G~~~~--~~~~~l~v~G~~evl~~~~~ 72 (383)
|||.++--+- .+..+...|.++|.++ +.++.++.--.+. ....+...- .+.-.-+..|-...+ ..
T Consensus 1 MkI~fi~p~l~~GGaEr~v~~la~~L~~~-Gh~V~v~t~~~d~~~~~~~~~~~~~~v~~~~~~~p~~~~~~~~~~---~~ 76 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSR-GHEVTIYTSHHDPSHCFEETKDGTLPVRVRGDWLPRSIFGRFHIL---CA 76 (392)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCHHHCCCCEEEEEECCCCCCHHCCHHHHH---HH
T ss_conf 98999869999986999999999999976-993999972688332405551785489992674670121237899---99
Q ss_pred HHHHHHH--HHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEC-CCCCCCCCCC-HHHH------------
Q ss_conf 9999999--9861001288868985117765799998663013463111100-2211003663-5579------------
Q gi|254780767|r 73 FIFRINQ--TVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVC-PSVWAWREGR-ARKM------------ 136 (383)
Q Consensus 73 ~~~~~~~--~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~-PqvWAWr~~R-~k~~------------ 136 (383)
+.+.... ........+||+++. |.......+.+.+. +.|+++|+- |..+.++.+. .+++
T Consensus 77 ~lr~~~~~~~~~~~~~~~~Dvi~~-~~~~~~~~~~~~~~----~~~ii~~~H~p~~~l~~~~~~~~~~y~~~~~~le~~~ 151 (392)
T cd03805 77 YLRMLYLALYLLLLPDEKYDVFIV-DQVSACVPLLKLFS----PSKILFYCHFPDQLLAQRGSLLKRLYRKPFDWLEEFT 151 (392)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEE-CCCCHHHHHHHHCC----CCCEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999998633479809998-88534799999746----9967999607840210266689999999999999998
Q ss_pred HHHHHHHCCCCCCCHHHHHC----CCCCCEEECCCCCCCC--CCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHC
Q ss_conf 99998640156774223200----2553147638821122--10013558889761876556505998538743012305
Q gi|254780767|r 137 CAYINQVISILPFEKEVMQR----LGGPPTTFVGHPLSSS--PSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKIL 210 (383)
Q Consensus 137 ~~~~d~~~~ifpFE~~~f~k----~~~~~~~fVGHPl~d~--~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~l 210 (383)
.+..|.++|.=.|..+.+.+ ...-+...+=|| .|. ........ .........+.+ +.+..| |-.+ .+..
T Consensus 152 ~~~~d~ii~~S~~~~~~~~~~~~~~~~~~~~vi~ng-id~~~~~~~~~~~-~~~~~~~~~~~~-~il~vg-Rl~~-~Kg~ 226 (392)
T cd03805 152 TGMADKIVVNSNFTASVFKKTFPSLAKNPREVVYPC-VDTDSFESTSEDP-DPGLLIPKSGKK-TFLSIN-RFER-KKNI 226 (392)
T ss_pred HHCCCEEEECCHHHHHHHHHHHHHHCCCCCEEECCC-CCHHHCCCCCCCH-HHHHHCCCCCCE-EEEEEE-CCCC-CCCH
T ss_conf 850889999567899999998302065885797798-4777648764104-455532467873-999984-4453-4668
Q ss_pred CCHHHHHHHHHHCCC---CCEEEECCCCCH---H-----HHHHHHHHHC-CCCCEEEEE----CCCCHHHHHHHHHHHCC
Q ss_conf 111899987640273---512620166336---8-----8999999604-888505520----55203578876355233
Q gi|254780767|r 211 PFFESAVASLVKRNP---FFRFSLVTVSSQ---E-----NLVRCIVSKW-DISPEIIID----KEQKKQVFMTCNAAMAA 274 (383)
Q Consensus 211 P~~l~~~~~l~~~~~---~~~~~i~~~~~~---~-----~~~~~~~~~~-~~~~~i~~~----~~~~~~~l~~sd~ai~~ 274 (383)
+.++++...+.++.+ ++++++...... + ..++....+. +....|... ..+..++++.||+.+.+
T Consensus 227 ~~lI~A~~~l~~~~~~~~~~~Lvi~Gg~~~r~~e~~~y~~eL~~l~~~~~~l~~~V~Flg~~~~~~~~~l~~~ad~~v~~ 306 (392)
T cd03805 227 ALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSSARALLYT 306 (392)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCEEEEC
T ss_conf 99999999999856766885999981875555101899999999999825987859998889969999999859799988
Q ss_pred C-----HHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHH
Q ss_conf 1-----15668887627530254057741000010246761023024407842612420548989999999998449899
Q gi|254780767|r 275 S-----GTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQ 349 (383)
Q Consensus 275 S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~ 349 (383)
| |.+.+|++.+|+|.|.. ..+... -+|-+..- =-++ + .+++.+++.+.++++|++.
T Consensus 307 s~~Egfg~v~lEAma~G~PVVas-d~gG~~---------------E~I~~g~~-G~Lv-~-~d~~~la~~i~~ll~d~~l 367 (392)
T cd03805 307 PSNEHFGIVPLEAMYAGKPVIAC-NSGGPL---------------ETVVDGET-GFLC-E-PTPEEFAEAMLKLANDPDL 367 (392)
T ss_pred CCCCCCCHHHHHHHHCCCCEEEE-CCCCCH---------------HHEECCCE-EEEE-C-CCHHHHHHHHHHHHCCHHH
T ss_conf 74346660799999779999994-899867---------------66457966-9995-9-5999999999999789999
Q ss_pred HHHHHHHHHH-HHHHHCC
Q ss_conf 9999999999-9998389
Q gi|254780767|r 350 RRAMLHGFEN-LWDRMNT 366 (383)
Q Consensus 350 r~~~~~~~~~-~~~~Lg~ 366 (383)
|++|-++.++ +.++.+.
T Consensus 368 r~~mg~~ar~~v~~~Fs~ 385 (392)
T cd03805 368 ADRMGAAGRKRVKEKFST 385 (392)
T ss_pred HHHHHHHHHHHHHHHCCH
T ss_conf 999999999999986699
No 39
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.46 E-value=1.6e-11 Score=95.98 Aligned_cols=324 Identities=15% Similarity=0.116 Sum_probs=170.2
Q ss_pred EEEEEEC----CCCH-HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHH--HHHHHHHHHHHHH
Q ss_conf 5999976----8214-7899999999997389983999971789994788065044453110136--7466459999999
Q gi|254780767|r 5 KIAVIAG----EISG-DLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIM--QVVRHLPQFIFRI 77 (383)
Q Consensus 5 ki~i~aG----E~SG-D~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~--evl~~~~~~~~~~ 77 (383)
||++++- +..| ..+..+|.++|.++ +.++.+...++..-... ... ....+..+. -.+...+......
T Consensus 1 kIL~i~~~f~P~~GG~e~~~~~L~~~L~~~-Gh~V~v~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 74 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAAR-GIEVAVLCASPEPKGRD---EER--NGHRVIRAPSLLNVASTPFSPSFF 74 (357)
T ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCC---CCC--CCCEEEECCCCCCCCCCHHHHHHH
T ss_conf 999993828998982999999999999977-99899998279887765---025--884799877433334420469999
Q ss_pred HHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEE-EC---CCCCCCCCCC--HHHHHHHHHHHCCCCCCCH
Q ss_conf 9998610012888689851177657999986630134631111-00---2211003663--5579999986401567742
Q gi|254780767|r 78 NQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINY-VC---PSVWAWREGR--ARKMCAYINQVISILPFEK 151 (383)
Q Consensus 78 ~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~y-v~---PqvWAWr~~R--~k~~~~~~d~~~~ifpFE~ 151 (383)
. ...++..+||+|.. .+|..-..++..+.+. ++|++.. -+ .+-|.|+-.+ .+.+-+..|+++++-+.-.
T Consensus 75 ~--~~~~~~~~~Diih~-h~~~~~~~~~~~~~~~--~~~~v~t~H~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~ 149 (357)
T cd03795 75 K--QLKKLAKKADVIHL-HFPNPLADLALLLLPR--KKPVVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVATSPNYA 149 (357)
T ss_pred H--HHHHHCCCCCEEEE-CCCCHHHHHHHHHHHC--CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCHHHH
T ss_conf 9--99997259999999-4763599999999857--99799998788532056799999999999984899998899999
Q ss_pred HHHHCC--CCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEE
Q ss_conf 232002--553147638821122100135588897618765565059985387430123051118999876402735126
Q gi|254780767|r 152 EVMQRL--GGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRF 229 (383)
Q Consensus 152 ~~f~k~--~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~ 229 (383)
+..+.. ..-+++.+-|.+ |...................+.+.| ++-| |-.+- +.++.++++++++ |++++
T Consensus 150 ~~~~~~~~~~~k~~vIpngv-d~~~~~~~~~~~~~~~~~~~~~~~i-~~vG-rl~~~-Kg~~~li~a~~~l----~~~~l 221 (357)
T cd03795 150 ETSPVLRRFRDKVRVIPLGL-DPARYPRPDALEEAIWRRAAGRPFF-LFVG-RLVYY-KGLDVLLEAAAAL----PDAPL 221 (357)
T ss_pred HHHHHHCCCCCCEEEECCCC-CCCCCCCCCHHHHHHHHCCCCCCEE-EEEE-CCCHH-CCCHHHHHHHHHC----CCEEE
T ss_conf 99998447767689988976-6233688736788874035899789-9980-78043-0957899898769----89099
Q ss_pred EECCCCCHHHHHHHHHHHCCCCCEEEEE----CCCCHHHHHHHHHHHCCC-------HHHHHHHHHHCCCEEEECCCCCC
Q ss_conf 2016633688999999604888505520----552035788763552331-------15668887627530254057741
Q gi|254780767|r 230 SLVTVSSQENLVRCIVSKWDISPEIIID----KEQKKQVFMTCNAAMAAS-------GTVILELALCGIPVVSIYKSEWI 298 (383)
Q Consensus 230 ~i~~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~l~~sd~ai~~S-------GTaTLE~al~g~P~IV~Yk~~~l 298 (383)
++.......+.++....+.+...+|... .++..+.++.||+.+.+| |.+.+|++.+|+|.| +...+..
T Consensus 222 ~i~G~G~~~~~l~~~~~~~~~~~~V~f~G~~~~~~~~~~~~~adi~v~pS~~~~Egfg~~~lEAma~G~PVV-at~~gg~ 300 (357)
T cd03795 222 VIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVI-STEIGTG 300 (357)
T ss_pred EEEECCCCCCCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEEECCHHCCCCCHHHHHHHHCCCCEE-EECCCCC
T ss_conf 999567542221000555187514752586514557988626878999464021356667999998799899-9359998
Q ss_pred EEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHH
Q ss_conf 0000102467610230244078426124205489899999999984498999999999999-99983
Q gi|254780767|r 299 VNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFEN-LWDRM 364 (383)
Q Consensus 299 t~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~-~~~~L 364 (383)
...+ +.+.. . =++-+.-+++.+++.+..+++|++.|++|-++.++ +.++.
T Consensus 301 ~~~i--------------~~~~~-~-G~l~~~~d~~~l~~~i~~ll~~~~~~~~m~~~ar~~~~~~f 351 (357)
T cd03795 301 GSYV--------------NLHGV-T-GLVVPPGDPAALAEAIRRLLEDPELRERLGEAARERAEEEF 351 (357)
T ss_pred HHHH--------------EECCC-E-EEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
T ss_conf 1560--------------55695-7-99978999999999999997799999999999999999857
No 40
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.46 E-value=4.5e-11 Score=93.05 Aligned_cols=328 Identities=16% Similarity=0.155 Sum_probs=188.4
Q ss_pred EEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEE--E--ECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH
Q ss_conf 999976821478999-99999997389983999--9--717899947880650444531101367466459999999999
Q gi|254780767|r 6 IAVIAGEISGDLLAG-DLIKSLKEMVSYPINLV--G--VGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383)
Q Consensus 6 i~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~--g--iGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383)
|++=|. .=|+..++ .|+++|+++.+ +.++. . -.|.++.+.-. -+.....+.- +| ....+
T Consensus 52 IW~Haa-SvGE~~~~~pli~~l~~~~p-~~~ilvTt~T~sg~~~~~~~~---~~~~~~~ylP-~D----------~~~~~ 115 (423)
T PRK05749 52 IWFHAV-SVGETRAAIPLIRALRKRYP-DLPILVTTMTPTGSERAKALF---GDDVEHVYLP-YD----------LPFAV 115 (423)
T ss_pred EEEEEC-CHHHHHHHHHHHHHHHHHCC-CCEEEEEECCCHHHHHHHHHC---CCCEEEEEEC-CC----------CHHHH
T ss_conf 999828-79899999999999996299-974999837830999999866---8973799922-47----------87999
Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEC---CC---CCCCCCCCHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 861001288868985117765799998663013463111100---22---110036635579999986401567742232
Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVC---PS---VWAWREGRARKMCAYINQVISILPFEKEVM 154 (383)
Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~---Pq---vWAWr~~R~k~~~~~~d~~~~ifpFE~~~f 154 (383)
.+.+...+||++|++.+- |=-.+-..++++ |||++-.=+ .. =|-|-.+=.+.+-+.+|++++-=.-..+-|
T Consensus 116 ~rfl~~~~P~~~i~~E~E-iWPnli~~~~~~--~Ip~~liNaR~s~~S~~~y~~~~~~~~~~l~~~~~i~~qs~~~~~r~ 192 (423)
T PRK05749 116 RRFLRFWRPKLLIIMETE-LWPNLIAEAKKR--GIPLVLANARLSERSFKRYAKFKRFYRLLFKNIDLVLAQSEEDAERF 192 (423)
T ss_pred HHHHHHHCCCEEEEEECC-CCHHHHHHHHHC--CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHH
T ss_conf 999997398879986203-108899999627--88667652511633676667669999999974276652699999999
Q ss_pred HCCCCC--CEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEEC
Q ss_conf 002553--147638821122100135588897618765565059985387430123051118999876402735126201
Q gi|254780767|r 155 QRLGGP--PTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLV 232 (383)
Q Consensus 155 ~k~~~~--~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~ 232 (383)
.+. |+ ++..+|+.=.|......+......-...-.++ .+.++.-++..|-. +++++.+.+.+++|++..+++
T Consensus 193 ~~l-G~~~~v~v~GnlKfd~~~~~~~~~~~~~~~~~~~~~-~v~vagSth~~EE~----iil~~~~~l~~~~~~~~lIia 266 (423)
T PRK05749 193 LAL-GAKNEVTVTGNLKFDIEIPPELAARAAALRRQLPNR-PVWIAASTHEGEEE----LVLDAHQALLKQFPNLLLILV 266 (423)
T ss_pred HHC-CCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC-CEEEEEECCHHHHH----HHHHHHHHHHHCCCCCEEEEE
T ss_conf 975-999743876863224578711078899999981899-68999928876999----999999999740878289994
Q ss_pred C-CCCHHHHHHHHHHHCCC-------------CCEEEE--ECCCCHHHHHHHHHHHCCC------HHHHHHHHHHCCCEE
Q ss_conf 6-63368899999960488-------------850552--0552035788763552331------156688876275302
Q gi|254780767|r 233 T-VSSQENLVRCIVSKWDI-------------SPEIII--DKEQKKQVFMTCNAAMAAS------GTVILELALCGIPVV 290 (383)
Q Consensus 233 ~-~~~~~~~~~~~~~~~~~-------------~~~i~~--~~~~~~~~l~~sd~ai~~S------GTaTLE~al~g~P~I 290 (383)
. -++..+.+...+...+. +.+|.+ ..|+...+++.||+|.+.- |-+.||.|.+|+|.+
T Consensus 267 PRHpeR~~~i~~~l~~~gl~~~~~S~~~~~~~~~~Vli~Dt~GeL~~~Y~~a~iafvGGsf~~~GGHN~lEpa~~g~pvi 346 (423)
T PRK05749 267 PRHPERFKEVEELLKKAGLSYVRRSQGEAPSADTDVLLGDTMGELGLLYAIADIAFVGGSLVKIGGHNPLEPAAFGVPVI 346 (423)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHCCCCEE
T ss_conf 78776799999999967997798279999998872999888875889998578789827768889959799998399889
Q ss_pred EECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCC-----CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 5405774100001024676102302440784261242054-----89899999999984498999999999999999838
Q gi|254780767|r 291 SIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSM-----IRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMN 365 (383)
Q Consensus 291 V~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~-----~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg 365 (383)
+.-.+.-. ++++.+|++.. -+++.+.+.+..+++|++.|++|..+..+..+.-
T Consensus 347 ~GP~~~nf---------------------~e~~~~L~~~g~~~~v~~~~eL~~~~~~ll~~~~~~~~~~~~a~~~v~~~- 404 (423)
T PRK05749 347 SGPHTFNF---------------------KEIFERLLQAGAAIQVEDAEDLAKAVSSLLTDPDAREAMGEAGVAFLKQN- 404 (423)
T ss_pred ECCCCCCH---------------------HHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC-
T ss_conf 99383277---------------------99999999789958968999999999999769999999999999999978-
Q ss_pred CCCCHHHHHHHHHHHHC
Q ss_conf 99998999999999861
Q gi|254780767|r 366 TKKPAGHMAAEIVLQVL 382 (383)
Q Consensus 366 ~~~~a~~~AA~~I~~~L 382 (383)
.| |.++.-+.|.++|
T Consensus 405 -~G-at~r~~~~i~~~L 419 (423)
T PRK05749 405 -RG-ALQRTLQLLKPYL 419 (423)
T ss_pred -CC-HHHHHHHHHHHHC
T ss_conf -47-9999999999763
No 41
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.46 E-value=4.1e-12 Score=99.91 Aligned_cols=252 Identities=15% Similarity=0.154 Sum_probs=142.6
Q ss_pred CEEEEEE--CCC--CHHHHHH-HHHHHHHHHCCCCEEEEEECCHH-----HHHCCCEEEECHHHCCEEEHHHHHHHHHHH
Q ss_conf 4599997--682--1478999-99999997389983999971789-----994788065044453110136746645999
Q gi|254780767|r 4 LKIAVIA--GEI--SGDLLAG-DLIKSLKEMVSYPINLVGVGGPS-----LQKEGLVSLFDFSELSVIGIMQVVRHLPQF 73 (383)
Q Consensus 4 mki~i~a--GE~--SGD~~~a-~li~~Lk~~~~~~~~~~giGG~~-----m~~~G~~~~~~~~~l~v~G~~evl~~~~~~ 73 (383)
|||+|-| |.. .|++.-+ .|.++|+++ +.++.|.+-+-+. ...+|.....- ..-+..
T Consensus 1 mkI~fr~d~~~~iG~GH~~RclaLA~~l~~~-g~~v~f~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--------- 66 (280)
T TIGR03590 1 MRILFRADASSEIGLGHVMRCLTLARELRKR-GAEVAFACKTLPGDLIDLILSAGFPVYVL----PDTSSW--------- 66 (280)
T ss_pred CEEEEEEECCCCEEHHHHHHHHHHHHHHHHC-CCEEEEEEECCCHHHHHHHHHCCCCEEEC----CCCCCC---------
T ss_conf 9799999678991320899999999999988-99499999279588999999759817981----675652---------
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCC-CCHH
Q ss_conf 999999986100128886898511776579999866301346311110022110036635579999986401567-7422
Q gi|254780767|r 74 IFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILP-FEKE 152 (383)
Q Consensus 74 ~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifp-FE~~ 152 (383)
......+.+.+.+.+||++| +|.-+++...-+.+|+. +.+++.+-- ... -..++|.++-.-| .+..
T Consensus 67 ~~~~~~~~~~~~~~~~d~vI-iD~y~~~~~~~~~lk~~--~~~~i~iDD---------~~~-~~~~~d~vin~~~~~~~~ 133 (280)
T TIGR03590 67 QDDALELINLLEKEKFDILI-VDHYALDADWEKLIKHF--GRKLLVIDD---------LAD-RPHDCDLLLDQNPGADAL 133 (280)
T ss_pred CCCHHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHHHH--CCEEEEEEC---------CCC-CCCCCCEEECCCCCCCHH
T ss_conf 01299999999737979999-92599997999999983--983999936---------765-465614254145444756
Q ss_pred HHHC-CCCCCEEECCC---CCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCE
Q ss_conf 3200-25531476388---2112210013558889761876556505998538743012305111899987640273512
Q gi|254780767|r 153 VMQR-LGGPPTTFVGH---PLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFR 228 (383)
Q Consensus 153 ~f~k-~~~~~~~fVGH---Pl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~ 228 (383)
-|+. ..+-...|.|. |+.+++...... ...-++..+++..|.||-...+ ..++++.+.+...+++
T Consensus 134 ~y~~~~~~~~~~l~G~~Y~~lr~~F~~~~~~-----~~~~~~~~~Ili~~GGsD~~~l------t~~il~~l~~~~~~~~ 202 (280)
T TIGR03590 134 DYQGLVPANCRLLLGPSYALLREEFYQLRTA-----NKRRKPLRRVLVSFGGADPDNL------TLKLLSALAESQINIS 202 (280)
T ss_pred HHCCCCCCCCEEEECCCCCCCCHHHHHHHHH-----HHCCCCCCEEEEEECCCCHHHH------HHHHHHHHHHHCCCCC
T ss_conf 6364488676698657534357888763032-----2103655328999778770008------9999999985166856
Q ss_pred EEECCCCC--HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECC
Q ss_conf 62016633--6889999996048885055205520357887635523311566888762753025405
Q gi|254780767|r 229 FSLVTVSS--QENLVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAASGTVILELALCGIPVVSIYK 294 (383)
Q Consensus 229 ~~i~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~Yk 294 (383)
+.+...+. ..+.+....... .+..+....++..+.|+.||+||+++||.+.|++.+|+|+|++.-
T Consensus 203 i~vvig~~~~~~~~i~~~~~~~-~~~~~~~~~~~m~~~m~~aDlaI~agG~t~~El~~~gvP~i~i~~ 269 (280)
T TIGR03590 203 ITLVTGSSNPNLDELKKFAKEY-PNIILFIDVENMAELMNEADLAIGAAGSTSWERCCLGLPSLSIVL 269 (280)
T ss_pred EEEEECCCCCCHHHHHHHHHHC-CCEEEECCHHHHHHHHHHCCEEEECCCHHHHHHHHHCCCEEEEEE
T ss_conf 7999867987669999999728-996996598899999997799998596589999994999899997
No 42
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=99.45 E-value=9.3e-11 Score=90.96 Aligned_cols=308 Identities=17% Similarity=0.179 Sum_probs=169.9
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEE-EECCHH-----------HHHCCCEEEECHHHC----CEEEHHHHH
Q ss_conf 4599997682147899999999997389983999-971789-----------994788065044453----110136746
Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLV-GVGGPS-----------LQKEGLVSLFDFSEL----SVIGIMQVV 67 (383)
Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~-giGG~~-----------m~~~G~~~~~~~~~l----~v~G~~evl 67 (383)
+||++++|--+-=+..|.++++|++. ++++.. =+.|.+ +...|+....++... +-.+..+
T Consensus 1 kKI~~v~GtRpe~iklapli~~l~~~--~~~~~~li~TGqH~~~~~g~t~~~i~~d~~~~~~~~~~~~~~~~~~~~~~-- 76 (365)
T TIGR03568 1 KKICVVTGTRADYGLLRPLLKALQDD--PDLELQLIVTGMHLSPEYGNTVNEIEKDGFDIDEKIEILLDSDSNAGMAK-- 76 (365)
T ss_pred CEEEEEEECCHHHHHHHHHHHHHHHC--CCCCEEEEEECCCCCHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH--
T ss_conf 94999985077299999999999728--99888999907778411070899999757987655765456898533999--
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECC--CCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 64599999999998610012888689851177657999986630134631111002--2110036635579999986401
Q gi|254780767|r 68 RHLPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCP--SVWAWREGRARKMCAYINQVIS 145 (383)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~P--qvWAWr~~R~k~~~~~~d~~~~ 145 (383)
.+-+.+..+-+.+.+.+||+|+.. .|=|=-+|-.+-....+||++|.=+= +.-.+- ...++.+|++..
T Consensus 77 ----~~~~~~~~~~~~l~~~kPD~VlV~--GDt~stla~alaA~~~~Ipv~HveaGlrs~~~~d----E~~R~~i~~lS~ 146 (365)
T TIGR03568 77 ----SMGLTIIGFSDAFERLKPDLVVVL--GDRFEMLAAAIAAALLNIPIAHIHGGEVTEGAID----ESIRHAITKLSH 146 (365)
T ss_pred ----HHHHHHHHHHHHHHHCCCCEEEEE--CCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCC----HHHHHHHHHHHH
T ss_conf ----999999999999854399899994--8986077999999981981899967864589886----588889899877
Q ss_pred C-CCCCHHH---HHCCCCC---CEEECCCCCCCCCCCC--CCHHHHHHHCCCCCCCCEEEEEEC---CCCCCHHHHCCCH
Q ss_conf 5-6774223---2002553---1476388211221001--355888976187655650599853---8743012305111
Q gi|254780767|r 146 I-LPFEKEV---MQRLGGP---PTTFVGHPLSSSPSIL--EVYSQRNKQRNTPSQWKKILLLPG---SRAQEIYKILPFF 213 (383)
Q Consensus 146 i-fpFE~~~---f~k~~~~---~~~fVGHPl~d~~~~~--~~~~~~~~~~~~~~~~~~I~llPG---SR~~EI~~~lP~~ 213 (383)
+ |.=.+.. ..+ .|+ ++.+||+|..|.+... .......+.++++.+++.+++.-= .+..+....+..+
T Consensus 147 ~hf~~t~~a~~nL~~-eG~~~~~I~~vGn~~iD~l~~~~~~~~~~~~~~~~~~~~~~~~LvT~Hp~~~~~~~~~~~l~~i 225 (365)
T TIGR03568 147 LHFVATEEYRQRVIQ-MGEDPDRVFNVGSPGLDNILSLDLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKEL 225 (365)
T ss_pred HHHCCCHHHHHHHHH-CCCCCCEEEEECCHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 773233578899986-2478670898277189998622213788999874121368769999535325665689999999
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHC-CCCCEEEEE----CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCC
Q ss_conf 89998764027351262016633688999999604-888505520----5520357887635523311566888762753
Q gi|254780767|r 214 ESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKW-DISPEIIID----KEQKKQVFMTCNAAMAASGTVILELALCGIP 288 (383)
Q Consensus 214 l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~i~~~----~~~~~~~l~~sd~ai~~SGTaTLE~al~g~P 288 (383)
++++.+ ...++.|+.|........+...+.++ ..+.++.+. ..+...+++.|+++|+-||..--|++.+|+|
T Consensus 226 l~al~~---~~~~~~~i~Pn~d~~~~~i~~~i~~~~~~~~ni~~i~pl~y~~fl~ll~~a~~vitdSsggi~Ea~~l~~P 302 (365)
T TIGR03568 226 LKALDE---LNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADAVIGNSSSGIIEAPSFGVP 302 (365)
T ss_pred HHHHHH---HCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCEEEECCCCCEEEECCCCCC
T ss_conf 999972---08881798269860278899999999707998899667888999999987019998588654670104986
Q ss_pred EEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHH
Q ss_conf 025405774100001024676102302440784261242054898999999999844989999
Q gi|254780767|r 289 VVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRR 351 (383)
Q Consensus 289 ~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~ 351 (383)
++.+- ..-+.. ... .|++. -.+++++|.+++..+++ +..++
T Consensus 303 ~i~i~--~Rq~~r----~~~-----~nvi~----------v~~~~~~I~~ai~~~~~-~~~~~ 343 (365)
T TIGR03568 303 TINIG--TRQKGR----LRA-----DSVID----------VDPDKEEIVKAIEKLLD-PAFKK 343 (365)
T ss_pred EEEEC--CCCCCC----CCC-----CEEEE----------ECCCHHHHHHHHHHHHC-HHHHH
T ss_conf 78837--885555----247-----60898----------17999999999999748-78987
No 43
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.43 E-value=7.1e-11 Score=91.73 Aligned_cols=323 Identities=15% Similarity=0.145 Sum_probs=162.2
Q ss_pred CEEEEEECCC---CHHHHHHHHHHHHHHHCCCCEEEEEECCHHH----HHCCCEEEECHHHCCEEEHHHHHHHHHHHHHH
Q ss_conf 4599997682---1478999999999973899839999717899----94788065044453110136746645999999
Q gi|254780767|r 4 LKIAVIAGEI---SGDLLAGDLIKSLKEMVSYPINLVGVGGPSL----QKEGLVSLFDFSELSVIGIMQVVRHLPQFIFR 76 (383)
Q Consensus 4 mki~i~aGE~---SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m----~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~ 76 (383)
|||+.+.... .+..+.-+|.++|.++ +.++++.-...... +..+.+.+ ++..+ ..|+. .+..
T Consensus 1 MKIL~v~~~~~~GGae~~~~~L~~~L~~~-Gh~v~v~~~~~~~~~~~~~~~~~dvv-h~h~~-~~~~~----~~~~---- 69 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAA-GVDSTMLVQEKKALISKIEIINADIV-HLHWI-HGGFL----SIED---- 69 (365)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHC-CCEEEEEEECCCCHHHHHHHCCCCEE-EECCC-CCCHH----CHHH----
T ss_conf 95999938999923899999999999977-99089999269847776655289989-98477-61020----5999----
Q ss_pred HHHHHHHCCCCCCCEEEEECHHHHH------HHHHHHHHHHCCCCCCEEE---ECCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 9999861001288868985117765------7999986630134631111---002211003663557999998640156
Q gi|254780767|r 77 INQTVELIVSSKPDVLLIVDNPDFT------HRVAKRVRKKMPNLPIINY---VCPSVWAWREGRARKMCAYINQVISIL 147 (383)
Q Consensus 77 ~~~~~~~i~~~~Pd~vi~iD~pgFn------l~lak~lkk~~~~ipvi~y---v~PqvWAWr~~R~k~~~~~~d~~~~if 147 (383)
...+....|.++.+=|+.-|. ....++.+. ...+|.+.. ..-+-|.|...+. .+...-++++|.=
T Consensus 70 ----l~~l~~~~p~v~t~Hd~~~~tg~~~~~~~~~~~~~~-~~~~p~l~~~~~~~~~~~~~~~~~~-~~~~~~~~iv~~S 143 (365)
T cd03825 70 ----LSKLLDRKPVVWTLHDMWPFTGGCHYPGGCDRYKTE-CGNCPQLGSYPEKDLSRWIWRRKRK-AWADLNLTIVAPS 143 (365)
T ss_pred ----HHHHHCCCCEEEEECCCCHHHCCCHHCCHHHHHHHC-CCCCCCCCCCCHHHHHHHHHHHHHH-HHHHCCCEEEECC
T ss_conf ----999970899899963565221510100011343020-4657775665534667999999999-9852599899869
Q ss_pred CCCHHHHHCC---CCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCC-HHHHCCCHHHHHHHHHHC
Q ss_conf 7742232002---553147638821122100135588897618765565059985387430-123051118999876402
Q gi|254780767|r 148 PFEKEVMQRL---GGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQE-IYKILPFFESAVASLVKR 223 (383)
Q Consensus 148 pFE~~~f~k~---~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~E-I~~~lP~~l~~~~~l~~~ 223 (383)
.+-.+...+. .+.+++.+-|++-.......++...++.++++.+.++|+ + |++... -.+....+++++..+.+.
T Consensus 144 ~~~~~~~~~~~~~~~~ki~vI~Ngid~~~f~p~~~~~~r~~~~~~~~~~vi~-~-~~~~~~~~~Kg~~~li~A~~~l~~~ 221 (365)
T cd03825 144 RWLADCARSSSLFKGIPIEVIPNGIDTTIFRPRDKREARKRLGLPADKKIIL-F-GAVGGTDPRKGFDELIEALKRLAER 221 (365)
T ss_pred HHHHHHHHHCCCCCCCCEEEECCCCCHHHCCCCCHHHHHHHHCCCCCCCEEE-E-EEECCCCCCCCHHHHHHHHHHHHHC
T ss_conf 8999999972488989789989973646449868899999839798885899-9-5300156432479999999987650
Q ss_pred C-CCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC--CC---CHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEE
Q ss_conf 7-3512620166336889999996048885055205--52---035788763552331-----15668887627530254
Q gi|254780767|r 224 N-PFFRFSLVTVSSQENLVRCIVSKWDISPEIIIDK--EQ---KKQVFMTCNAAMAAS-----GTVILELALCGIPVVSI 292 (383)
Q Consensus 224 ~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~---~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~ 292 (383)
. +++.+++......+. . ...+ .++.... ++ ..+.+++||+.+.+| |.+.+|++.+|+| ||+
T Consensus 222 ~~~~~~lvi~G~~~~~~--~---~~l~--~~v~flG~~~~~~~l~~~~~~aDi~v~pS~~Egfg~v~lEAma~G~P-VVa 293 (365)
T cd03825 222 WKDDIELVVFGASDPEI--P---PDLP--FPVHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIEALACGTP-VVA 293 (365)
T ss_pred CCCCEEEEEECCCCHHH--H---HHCC--CCEEEECCCCCHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHCCCC-EEE
T ss_conf 68988999937985888--9---6689--97999268799899999997272995167768885999999971998-997
Q ss_pred CCCCCCEEEEEECCCCCCEEEEHHHCCCC---CCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HHHHCCCC
Q ss_conf 05774100001024676102302440784---261242054898999999999844989999999999999-99838999
Q gi|254780767|r 293 YKSEWIVNFFIFYIKTWTCALPNLIVDYP---LVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENL-WDRMNTKK 368 (383)
Q Consensus 293 Yk~~~lt~~i~~lik~~~i~LpNii~~~~---ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~-~~~Lg~~~ 368 (383)
+..+.+.. ++-+.. ++| .-+++.+++++..+++|++.|+++-++.++. .++..
T Consensus 294 sd~gg~~e---------------iv~~~~~G~lv~-----~~d~~~la~ai~~ll~d~~~~~~~~~~ar~~~~~~fs--- 350 (365)
T cd03825 294 FDVGGIPD---------------IVDHGVTGYLAK-----PGDPEDLAEGIEWLLADPDEREELGEAARELAENEFD--- 350 (365)
T ss_pred CCCCCHHH---------------HHCCCCCEEEEC-----CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC---
T ss_conf 38998599---------------960798279979-----9999999999999986999999999999999998689---
Q ss_pred CHHHHHHHH
Q ss_conf 989999999
Q gi|254780767|r 369 PAGHMAAEI 377 (383)
Q Consensus 369 ~a~~~AA~~ 377 (383)
.++++++.
T Consensus 351 -~~~~~~~~ 358 (365)
T cd03825 351 -SRVQAKRY 358 (365)
T ss_pred -HHHHHHHH
T ss_conf -99999999
No 44
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.40 E-value=1.7e-09 Score=82.66 Aligned_cols=335 Identities=15% Similarity=0.103 Sum_probs=163.7
Q ss_pred CEEEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEEEECC--HHHHHCCCEEEE-C--HHHCC----------EEEHHHHH
Q ss_conf 45999976821478999-999999973899839999717--899947880650-4--44531----------10136746
Q gi|254780767|r 4 LKIAVIAGEISGDLLAG-DLIKSLKEMVSYPINLVGVGG--PSLQKEGLVSLF-D--FSELS----------VIGIMQVV 67 (383)
Q Consensus 4 mki~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~giGG--~~m~~~G~~~~~-~--~~~l~----------v~G~~evl 67 (383)
|||.+.++-..||++.. .|.++|+++ +.++.|.+-.+ +..++.|++... + ..... ..+.....
T Consensus 1 Mril~~~~~~~GH~~P~l~lA~~L~~r-Gh~Vt~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAA-GHEVRVATPPEFADLVEAAGLEFVPVGGDPDELLASPERNAGLLLLGPGLLL 79 (401)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHC-CCEEEEEECHHHHHHHHHCCCEEEECCCCHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf 979998798575899999999999988-9959999387888899977986887698777764211123333454055799
Q ss_pred HHH----HHHHHHHHHHHHHCCCCCCCEEEEECHHHHH-HHHHHHHHHHCCCCCCEEEE-CC----------CCCCCC--
Q ss_conf 645----9999999999861001288868985117765-79999866301346311110-02----------211003--
Q gi|254780767|r 68 RHL----PQFIFRINQTVELIVSSKPDVLLIVDNPDFT-HRVAKRVRKKMPNLPIINYV-CP----------SVWAWR-- 129 (383)
Q Consensus 68 ~~~----~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFn-l~lak~lkk~~~~ipvi~yv-~P----------qvWAWr-- 129 (383)
... .........+.+.+...+||+|| .|+-.+- .-+|+. .|||.+.+. .| ..|.|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~pD~vi-~d~~~~~~~~~A~~-----~giP~v~~~~~p~~~~~~~~~~~~~~~~~~ 153 (401)
T cd03784 80 GALRLLRREAEAMLDDLVAAARDWGPDLVV-ADPLAFAGAVAAEA-----LGIPAVRLLLGPDTPTSAFPPPLGRANLRL 153 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEE-ECCCHHHHHHHHHH-----HCCCEEEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf 999999999999999999996167998899-89707899999999-----299989995666545332567410244310
Q ss_pred ----------CCCHHHHHHHHHHH---------------C-----CCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCH
Q ss_conf ----------66355799999864---------------0-----15677422320025531476388211221001355
Q gi|254780767|r 130 ----------EGRARKMCAYINQV---------------I-----SILPFEKEVMQRLGGPPTTFVGHPLSSSPSILEVY 179 (383)
Q Consensus 130 ----------~~R~k~~~~~~d~~---------------~-----~ifpFE~~~f~k~~~~~~~fVGHPl~d~~~~~~~~ 179 (383)
....+.+....+.. . +.++++..+ .-....+|.++..........
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 228 (401)
T cd03784 154 YALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPPPPDW-----PRFDLVTGYGFRDVPYNGPPP 228 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC-----CCCCEECCCCCCCCCCCCCCC
T ss_conf 455555555545788999999983999654200047840012125555657664-----445512278877777778888
Q ss_pred HHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEE-EC
Q ss_conf 88897618765565059985387430123051118999876402735126201663368899999960488850552-05
Q gi|254780767|r 180 SQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEIII-DK 258 (383)
Q Consensus 180 ~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~-~~ 258 (383)
.+. ...+++++++|.+--||-...- ...+.+.+...... .+.+++......... .. ..+.++.+ ..
T Consensus 229 ~~~--~~~l~~~~~vVyvs~GS~~~~~---~~~~~~~~~~~l~~-~~~~~i~~~~~~~~~-----~~--~~~~nv~i~~~ 295 (401)
T cd03784 229 PEL--WLFLAAGRPPVYVGFGSMVVRD---PEALARLDVEAVAT-LGQRAILSLGWGGLG-----AE--DLPDNVRVVDF 295 (401)
T ss_pred HHH--HHHCCCCCCEEEEECCCCHHCC---HHHHHHHHHHHHHH-CCCEEEEEECCCCCC-----CC--CCCCCEEEECC
T ss_conf 567--7513569976999788301028---99999999999996-698499996787666-----55--68997899567
Q ss_pred CCCHHHHHHHHHHHCCCHHHHH-HHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHH
Q ss_conf 5203578876355233115668-887627530254057741000010246761023024407842612420548989999
Q gi|254780767|r 259 EQKKQVFMTCNAAMAASGTVIL-ELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALV 337 (383)
Q Consensus 259 ~~~~~~l~~sd~ai~~SGTaTL-E~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~ 337 (383)
-...++|.++|+.|+-.|..|. |+...|+|||++--. +=....++.+.-.-+| ..+-++++|++.|.
T Consensus 296 ~pq~~iL~~~~~~ItHgG~~s~~Eal~~GvP~v~~P~~-~DQ~~nA~rv~~~G~G-----------~~l~~~~~t~e~l~ 363 (401)
T cd03784 296 VPHDWLLPRCAAVVHHGGAGTTAAALRAGVPQLVVPFF-GDQPFWAARVAELGAG-----------PALDPRELTAERLA 363 (401)
T ss_pred CCHHHHHHHCCEEEECCCHHHHHHHHHCCCCEEECCCC-CCHHHHHHHHHHCCCC-----------CCCCCCCCCHHHHH
T ss_conf 89899974379999668758999999819998953775-5689999999987971-----------27783569999999
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99999844989999999999999998389999899999999986
Q gi|254780767|r 338 RWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAEIVLQV 381 (383)
Q Consensus 338 ~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~~ 381 (383)
+++.++|+|+.+++. .++.+.+...+++ ..||++|.++
T Consensus 364 ~av~~lL~~~~~~~a-----~~~~~~~~~~~g~-~~aa~~ie~l 401 (401)
T cd03784 364 AALRRLLDPPSRRRA-----AALLRRIREEDGV-PSAADVIERL 401 (401)
T ss_pred HHHHHHHCCHHHHHH-----HHHHHHHHHCCCH-HHHHHHHHCC
T ss_conf 999999489999999-----9999998755888-9999998439
No 45
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=99.37 E-value=8.9e-10 Score=84.47 Aligned_cols=337 Identities=16% Similarity=0.155 Sum_probs=197.2
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEE-EEEECCHHH---------HHCCCEEEECHHHCCEE--E--HHHH
Q ss_conf 98745999976821478999999999973899839-999717899---------94788065044453110--1--3674
Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPIN-LVGVGGPSL---------QKEGLVSLFDFSELSVI--G--IMQV 66 (383)
Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~-~~giGG~~m---------~~~G~~~~~~~~~l~v~--G--~~ev 66 (383)
|+.|||.++.|----=+--|.|++++++. + +++ +.-+.|.++ +..|+. .+--++++| | +.+.
T Consensus 1 m~~~Kv~~I~GTRPE~iKmapli~~~~~~-~-~~~~~vi~TGQH~d~em~~~~le~~~i~--~pdy~L~i~~~~~tl~~~ 76 (383)
T COG0381 1 MKMLKVLTIFGTRPEAIKMAPLVKALEKD-P-DFELIVIHTGQHRDYEMLDQVLELFGIR--KPDYDLNIMKPGQTLGEI 76 (383)
T ss_pred CCCEEEEEEEECCHHHHHHHHHHHHHHHC-C-CCCEEEEEECCCCCHHHHHHHHHHHCCC--CCCCCHHCCCCCCCHHHH
T ss_conf 99638999985589999870999999858-9-9735999706654277899999982898--888313216668888999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEC----CCCCCCCCCCHHHHHHHHHH
Q ss_conf 66459999999999861001288868985117765799998663013463111100----22110036635579999986
Q gi|254780767|r 67 VRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVC----PSVWAWREGRARKMCAYINQ 142 (383)
Q Consensus 67 l~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~----PqvWAWr~~R~k~~~~~~d~ 142 (383)
. -+.+..+.+.+.+.+||+|+. ..|=|--+|-.+-....+|||.|.=+ =..+ |-+. .-++.+|+
T Consensus 77 t------~~~i~~~~~vl~~~kPD~VlV--hGDT~t~lA~alaa~~~~IpV~HvEAGlRt~~~~-~PEE---~NR~l~~~ 144 (383)
T COG0381 77 T------GNIIEGLSKVLEEEKPDLVLV--HGDTNTTLAGALAAFYLKIPVGHVEAGLRTGDLY-FPEE---INRRLTSH 144 (383)
T ss_pred H------HHHHHHHHHHHHHHCCCEEEE--ECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCHH---HHHHHHHH
T ss_conf 9------999999999998629998999--1785368899999998689368874254447877-8379---87878877
Q ss_pred HCCC--CCCC--HHHHHCCCCC---CEEECCCCCCCCCCCCCCHHH----HHHHCCCCCCCCEEEEEECCCCCCHHHHCC
Q ss_conf 4015--6774--2232002553---147638821122100135588----897618765565059985387430123051
Q gi|254780767|r 143 VISI--LPFE--KEVMQRLGGP---PTTFVGHPLSSSPSILEVYSQ----RNKQRNTPSQWKKILLLPGSRAQEIYKILP 211 (383)
Q Consensus 143 ~~~i--fpFE--~~~f~k~~~~---~~~fVGHPl~d~~~~~~~~~~----~~~~~~~~~~~~~I~llPGSR~~EI~~~lP 211 (383)
+.-+ =|=| ++...+ .|+ .+..+|+|..|.......+.. ....+-.+.++++|++ -+-|+--+...+.
T Consensus 145 ~S~~hfapte~ar~nLl~-EG~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~~~~~~~iLv-T~HRreN~~~~~~ 222 (383)
T COG0381 145 LSDLHFAPTEIARKNLLR-EGVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLDDKDKKYILV-TAHRRENVGEPLE 222 (383)
T ss_pred HHHHHCCCHHHHHHHHHH-CCCCCCCEEEECCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEE-ECCHHHCCCCCHH
T ss_conf 652303771999999997-69995516885973999999877641000466776632456738999-7055540364299
Q ss_pred CHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHH-HHHCCCCCEEEEEC----CCCHHHHHHHHHHHCCCHHHHHHHHHHC
Q ss_conf 118999876402735126201663368899999-96048885055205----5203578876355233115668887627
Q gi|254780767|r 212 FFESAVASLVKRNPFFRFSLVTVSSQENLVRCI-VSKWDISPEIIIDK----EQKKQVFMTCNAAMAASGTVILELALCG 286 (383)
Q Consensus 212 ~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~i~~~~----~~~~~~l~~sd~ai~~SGTaTLE~al~g 286 (383)
-+.+++.++.++++++.++.|..+. ..++.. ....+...++.+.. .+...++..|.+.++-||+..-|+..+|
T Consensus 223 ~i~~al~~i~~~~~~~~viyp~H~~--~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~iltDSGgiqEEAp~lg 300 (383)
T COG0381 223 EICEALREIAEEYPDVIVIYPVHPR--PRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFLILTDSGGIQEEAPSLG 300 (383)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCEEEEECCCCHHHHHHHCC
T ss_conf 9999999999867895699747997--66668899983898767986883669899999745099954871354477619
Q ss_pred CCEEEECC-CCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 53025405-77410000102467610230244078426124205489899999999984498999999999999999838
Q gi|254780767|r 287 IPVVSIYK-SEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMN 365 (383)
Q Consensus 287 ~P~IV~Yk-~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg 365 (383)
+|.+++=. |-+-...- .- .|++. ..+.++|.+++..+++|++..++|.+. ..--|
T Consensus 301 ~Pvl~lR~~TERPE~v~-----ag----t~~lv-----------g~~~~~i~~~~~~ll~~~~~~~~m~~~----~npYg 356 (383)
T COG0381 301 KPVLVLRDTTERPEGVE-----AG----TNILV-----------GTDEENILDAATELLEDEEFYERMSNA----KNPYG 356 (383)
T ss_pred CCEEEECCCCCCCCCEE-----CC----CEEEE-----------CCCHHHHHHHHHHHHHCHHHHHHHHCC----CCCCC
T ss_conf 92776136777841000-----37----04871-----------765899999999986295889987425----58886
Q ss_pred CCCCHHHHHHHHHHHHC
Q ss_conf 99998999999999861
Q gi|254780767|r 366 TKKPAGHMAAEIVLQVL 382 (383)
Q Consensus 366 ~~~~a~~~AA~~I~~~L 382 (383)
... ++++-++++.+..
T Consensus 357 dg~-as~rIv~~l~~~~ 372 (383)
T COG0381 357 DGN-ASERIVEILLNYF 372 (383)
T ss_pred CCC-HHHHHHHHHHHHH
T ss_conf 750-5799999999885
No 46
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.35 E-value=2.5e-10 Score=88.09 Aligned_cols=260 Identities=19% Similarity=0.239 Sum_probs=159.9
Q ss_pred HHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEE-EEC------CC-CC----CCCCCCHHHHHHHHHHHC
Q ss_conf 9999861001288868985117765799998663013463111-100------22-11----003663557999998640
Q gi|254780767|r 77 INQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIIN-YVC------PS-VW----AWREGRARKMCAYINQVI 144 (383)
Q Consensus 77 ~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~-yv~------Pq-vW----AWr~~R~k~~~~~~d~~~ 144 (383)
...+.+.+++.+||+|-.= + ++.--.+-.+.++ .|||+++ |=. |. .| .|-..+-+.+.+..|.++
T Consensus 71 ~~~l~r~lr~~~pDlIHaH-~-~~~g~~~~~~a~~-~~iP~V~T~Hg~d~~~~~~~~~~~~~~~~~~~~~~l~~~a~~iI 147 (367)
T cd05844 71 APQLRRLLRRHRPDLVHAH-F-GFDGVYALPLARR-LGVPLVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALFI 147 (367)
T ss_pred CHHHHHHHHHCCCCEEEEC-C-CCHHHHHHHHHHH-HCCCEEEEEECCCCCCCCCHHCCCHHHHHHHHHHHHHHHCCEEE
T ss_conf 4899999997699999976-8-6068999999999-69999999813641014101001104678999999997269999
Q ss_pred CCCCCCHHHHHCCCCCC---EEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHH
Q ss_conf 15677422320025531---476388211221001355888976187655650599853874301230511189998764
Q gi|254780767|r 145 SILPFEKEVMQRLGGPP---TTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLV 221 (383)
Q Consensus 145 ~ifpFE~~~f~k~~~~~---~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~ 221 (383)
|.=.+..+...+. |++ ++.+-|-+ |... ... . ..+......++-| |-.| ++.++.+++++..+.
T Consensus 148 ~vS~~~~~~l~~~-G~~~~ki~vi~~Gv-D~~~-f~~------~--~~~~~~~~il~vG-Rl~~-~KG~~~li~A~~~l~ 214 (367)
T cd05844 148 AVSQFIRDRLLAL-GFPPEKVHVHPIGV-DTAK-FTP------A--TPARRPPRILFVG-RFVE-KKGPLLLLEAFARLA 214 (367)
T ss_pred ECCHHHHHHHHHC-CCCHHHEEEECCCC-CHHH-CCC------C--CCCCCCCEEEEEE-CCCC-CCCHHHHHHHHHHHH
T ss_conf 6999999999985-98978999977863-6764-699------9--8777896899993-5730-007699999999979
Q ss_pred HCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEE----CCCCHHHHHHHHHHHCCC-----------HHHHHHHHHHC
Q ss_conf 027351262016633688999999604888505520----552035788763552331-----------15668887627
Q gi|254780767|r 222 KRNPFFRFSLVTVSSQENLVRCIVSKWDISPEIIID----KEQKKQVFMTCNAAMAAS-----------GTVILELALCG 286 (383)
Q Consensus 222 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~l~~sd~ai~~S-----------GTaTLE~al~g 286 (383)
+++|++++++.........++....+.++...+.+. .++..+.|+.||+.+..| |.+.+|++.+|
T Consensus 215 ~~~p~~~l~ivG~Gp~~~~l~~~~~~l~l~~~V~f~G~~~~~~v~~~l~~adv~v~PS~~~~~g~~Eg~~~~~lEAmA~G 294 (367)
T cd05844 215 RRVPEVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASG 294 (367)
T ss_pred HHCCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHCC
T ss_conf 66869799999888378999999997098763787788981889999985787996002037788567637999999849
Q ss_pred CCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCC---CCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 5302540577410000102467610230244078---4261242054898999999999844989999999999999998
Q gi|254780767|r 287 IPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDY---PLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDR 363 (383)
Q Consensus 287 ~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~---~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~ 363 (383)
+|.| +-+.+ ++|-++.+. -++|| -+++.+++.+..+++|++.+++|-.+.++..+.
T Consensus 295 ~PVV-at~~g---------------gi~e~V~~g~~G~lv~~-----~d~~~La~ai~~Ll~d~~~~~~m~~~gr~~v~~ 353 (367)
T cd05844 295 VPVV-ATRHG---------------GIPEAVEDGETGLLVPE-----GDVAALAAALGRLLADPDLRARMGAAGRRRVEE 353 (367)
T ss_pred CCEE-EECCC---------------CCHHHHCCCCCEEEECC-----CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 9789-92799---------------86877207996899789-----999999999999984999999999999999998
Q ss_pred HCCCCCHHHHHHH
Q ss_conf 3899998999999
Q gi|254780767|r 364 MNTKKPAGHMAAE 376 (383)
Q Consensus 364 Lg~~~~a~~~AA~ 376 (383)
.-+.++.+++
T Consensus 354 ---~f~~~~~~~~ 363 (367)
T cd05844 354 ---RFDLRRQTAK 363 (367)
T ss_pred ---HCCHHHHHHH
T ss_conf ---1999999999
No 47
>pfam04007 DUF354 Protein of unknown function (DUF354). Members of this family are around 350 amino acids in length. They are found in archaebacteria and have no known function.
Probab=99.34 E-value=9.8e-11 Score=90.81 Aligned_cols=300 Identities=17% Similarity=0.165 Sum_probs=173.7
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEE----EECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHH
Q ss_conf 4599997682147899999999997389983999----971789994788065044453110136746645999999999
Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLV----GVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQ 79 (383)
Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~----giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~ 79 (383)
|||||=.+-+.-=..-..++++|+++ +.++-+. +.--+.++..|++-. .++--|- ....++-.......+
T Consensus 1 MkIwiDI~~p~hvhfFk~iI~eL~k~-GheV~iTaR~~~~~~~LL~~y~i~~~----~iG~~g~-s~~~Kl~~~~~R~~~ 74 (335)
T pfam04007 1 LKVWIDITNAPHVHFFKPIISELEKE-GYEVLLTCRKFGELPELLRSLGFQVK----SIGKHGA-TLIKKLLSSAERVYL 74 (335)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHC-CCEEEEEEECCCHHHHHHHHCCCCEE----EECCCCC-CHHHHHHHHHHHHHH
T ss_conf 93999789950888899999999868-98899999613519999997699769----9758888-889999999999999
Q ss_pred HHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEE-CCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCC
Q ss_conf 986100128886898511776579999866301346311110-0221100366355799999864015677422320025
Q gi|254780767|r 80 TVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYV-CPSVWAWREGRARKMCAYINQVISILPFEKEVMQRLG 158 (383)
Q Consensus 80 ~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv-~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k~~ 158 (383)
+.+.+++++||++|...+|+-. ++|. +.|+|.|.+. .|+ |=...| ..--++|.+++-..+-.+++.++
T Consensus 75 L~~~~~~~~PDv~is~~S~~a~-~va~-----~LgipsI~f~Dteh--a~~~~~--Lt~Pf~~~i~~P~~~~~~~~~~~- 143 (335)
T pfam04007 75 LTKLIPEKKPDVAIMKNSMELP-RVAF-----GLRIPSIIVLDNEH--ALAANK--LTFPLADYILVPEIIDDEFLRFF- 143 (335)
T ss_pred HHHHHHHHCCCEEEECCCHHHH-HHHH-----HCCCCEEEEECCHH--HCCCCE--EEEECCCEEECCCCCCHHHHHHH-
T ss_conf 9999886299789944880199-9998-----82998799947755--412330--23123868881244677899860-
Q ss_pred CCC---EEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCC-CHHHHCCCHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 531---4763882112210013558889761876556505998538743-012305111899987640273512620166
Q gi|254780767|r 159 GPP---TTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQ-EIYKILPFFESAVASLVKRNPFFRFSLVTV 234 (383)
Q Consensus 159 ~~~---~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~-EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~ 234 (383)
|.+ .+|=|---.-++....+..+..+++|+++ +++|.+=|.|-.+ =....-++.-+.++.+.+. .+-.+++|-.
T Consensus 144 G~~~~i~~y~g~~E~a~l~~F~Pd~~vl~~lgl~~-~~yIvvR~~~~~A~y~~g~~~i~~~ii~~l~~~-~~~iv~~pr~ 221 (335)
T pfam04007 144 GADNRIRTYPGIKEIANISDYVPDPEILKKLGLEF-EEYIVMRPEPLASSYVNGHESILPEIIEMLTKE-GVNIIYFPRN 221 (335)
T ss_pred CCCCCEEEECCCCEEEECCCCCCCHHHHHHCCCCC-CCEEEEEECCCCCEECCCCCCHHHHHHHHHHHC-CCCEEEECCC
T ss_conf 87785676668441432166689865787649987-988999616455600114421599999999875-9819997587
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEE
Q ss_conf 33688999999604888505520552035788763552331156688876275302540577410000102467610230
Q gi|254780767|r 235 SSQENLVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAASGTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALP 314 (383)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~Lp 314 (383)
+++. ....++. ..+....-+..+++..||+.|..+||.+.|+|++|||+|-||...... .=..+++.
T Consensus 222 ~~q~----~~~~~~~--v~i~~~~vd~~~Lly~adl~Ig~GgTMa~EAAlLGtPaIs~~p~~~~~-vd~~l~~~------ 288 (335)
T pfam04007 222 KEQR----EIFRGFD--VIIPKKPVDTLSLLYYSDLVIGAGGTMNREAALLGTPAVSCYPGKLLA-VDKYLIEK------ 288 (335)
T ss_pred CHHH----HHHCCCC--EECCCCCCCHHHHHHHCCEEECCCHHHHHHHHHHCCCEEEECCCCCCH-HHHHHHHC------
T ss_conf 0366----7750477--036788877788886546897275689999998289879843885213-67999867------
Q ss_pred HHHCCCCCCCHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 2440784261242054898999999999844
Q gi|254780767|r 315 NLIVDYPLVPEYFNSMIRSEALVRWIERLSQ 345 (383)
Q Consensus 315 Nii~~~~ivPEliQ~~~~~~~i~~~~~~ll~ 345 (383)
. ++-.--+++++.+.+.+.+.
T Consensus 289 ------g----l~~~~~d~~~i~~~v~~~~~ 309 (335)
T pfam04007 289 ------G----EMYHSTDPREIVNYVISNLK 309 (335)
T ss_pred ------C----CEEEECCHHHHHHHHHHHHH
T ss_conf ------9----87961898999999999860
No 48
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.33 E-value=1.1e-09 Score=83.91 Aligned_cols=313 Identities=15% Similarity=0.132 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHH-HHHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 4789999999999738998399997178999478806504445311013674-664599999999998610012888689
Q gi|254780767|r 15 GDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQV-VRHLPQFIFRINQTVELIVSSKPDVLL 93 (383)
Q Consensus 15 GD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~ev-l~~~~~~~~~~~~~~~~i~~~~Pd~vi 93 (383)
-..|...|.++|.++ +.++.++......... . .......+..+... ......+...+..+. .....+||.++
T Consensus 17 ~e~~v~~La~~L~~~-Gh~V~v~t~~~~~~~~---~--~~~~gv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~ 89 (363)
T cd04955 17 FETFVEELAPRLVAR-GHEVTVYCRSPYPKQK---E--TEYNGVRLIHIPAPEIGGLGTIIYDILAIL-HALFVKRDIDH 89 (363)
T ss_pred HHHHHHHHHHHHHHC-CCEEEEEECCCCCCCC---C--EEECCEEEEEECCCCCCCHHHHHHHHHHHH-HHHHHCCCEEE
T ss_conf 899999999999977-9979999878988887---5--134777999927644451677898999999-99860899899
Q ss_pred EECHHHHHHHHHHHHHHHCCCCCCEEEECCCC-----CCCCCCCH-----HHHHHHHHHHCCCCCCCHHHHHCCCCCCEE
Q ss_conf 85117765799998663013463111100221-----10036635-----579999986401567742232002553147
Q gi|254780767|r 94 IVDNPDFTHRVAKRVRKKMPNLPIINYVCPSV-----WAWREGRA-----RKMCAYINQVISILPFEKEVMQRLGGPPTT 163 (383)
Q Consensus 94 ~iD~pgFnl~lak~lkk~~~~ipvi~yv~Pqv-----WAWr~~R~-----k~~~~~~d~~~~ifpFE~~~f~k~~~~~~~ 163 (383)
.-...-+....+..+++. ++|++.-+--.- |.+-..+. +...+..|+++|.-+...+++.+..+.+.+
T Consensus 90 ~h~~~~~~~~~~~~~~~~--~~~~v~t~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~l~~~~~~~~~ 167 (363)
T cd04955 90 VHALGPAIAPFLPLLRLK--GKKVVVNMDGLEWKRAKWGRPAKRYLKFGEKLAVKFADRLIADSPGIKEYLKEKYGRDST 167 (363)
T ss_pred EEECCHHHHHHHHHHHHC--CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHCCCCCE
T ss_conf 997781689999999733--983999936740113220178999999999999860899999988999999986499839
Q ss_pred ECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCC-CHHHHHH
Q ss_conf 638821122100135588897618765565059985387430123051118999876402735126201663-3688999
Q gi|254780767|r 164 FVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVS-SQENLVR 242 (383)
Q Consensus 164 fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~-~~~~~~~ 242 (383)
++-|+. |. .........+++.++.+++ ..++.| |-..- +.+..+++++.++.. ++.+++.... ......+
T Consensus 168 vIpnGv-d~-~~~~~~~~~~~~~~~~~~~--~il~vg-Rl~~~-Kg~~~ll~A~~~l~~---~~~l~iiG~g~~~~~~~~ 238 (363)
T cd04955 168 YIPYGA-DH-VVSSEEDEILKKYGLEPGR--YYLLVG-RIVPE-NNIDDLIEAFSKSNS---GKKLVIVGNADHNTPYGK 238 (363)
T ss_pred EECCCC-CC-CCCCCCHHHHHHCCCCCCC--EEEEEE-CCCCC-CCHHHHHHHHHHHCC---CCEEEEECCCCCCCHHHH
T ss_conf 978987-54-6777506679870899898--899994-47530-479999999985263---561999777776308999
Q ss_pred HHHHHCCCCCEEEEE----CCCCHHHHHHHHHHHCCC------HHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEE
Q ss_conf 999604888505520----552035788763552331------1566888762753025405774100001024676102
Q gi|254780767|r 243 CIVSKWDISPEIIID----KEQKKQVFMTCNAAMAAS------GTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCA 312 (383)
Q Consensus 243 ~~~~~~~~~~~i~~~----~~~~~~~l~~sd~ai~~S------GTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~ 312 (383)
..........+|.+. .++..+.++.||+.+..| |.+.||++++|+|.| +.........
T Consensus 239 ~l~~~~~~~~~V~flG~~~~~~~~~~~~~ad~~v~pS~~~Eg~~~~~lEAma~G~PVV-as~~~~~~ev----------- 306 (363)
T cd04955 239 LLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVL-ASDNPFNREV----------- 306 (363)
T ss_pred HHHHHHCCCCCEEEECCCCCHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHCCCEE-ECCCCCCCEE-----------
T ss_conf 9999734699379707888477898631354464345666787689999998199999-9179987069-----------
Q ss_pred EEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHCCC
Q ss_conf 30244078426124205489899999999984498999999999999-99983899
Q gi|254780767|r 313 LPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFEN-LWDRMNTK 367 (383)
Q Consensus 313 LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~-~~~~Lg~~ 367 (383)
+.+... ++ -+++.+++.+.++++|++.|++|-++..+ +.+....+
T Consensus 307 ----~~~~~~---~~---~~~~~la~~i~~ll~d~~~~~~~g~~ar~~v~~~fsw~ 352 (363)
T cd04955 307 ----LGDKAI---YF---KVGDDLASLLEELEADPEEVSAMAKAARERIREKYTWE 352 (363)
T ss_pred ----ECCCEE---EC---CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHH
T ss_conf ----758847---77---99899999999997599999999999999999858999
No 49
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.30 E-value=1.1e-09 Score=83.84 Aligned_cols=308 Identities=13% Similarity=0.119 Sum_probs=164.5
Q ss_pred CCCEEEEEECCCCH----HHHHHHHHHHHHHHCCCCEEEEEEC--CHHHHHCCCEEEECHHHCCEEEHHH-HHHHHHHHH
Q ss_conf 87459999768214----7899999999997389983999971--7899947880650444531101367-466459999
Q gi|254780767|r 2 NSLKIAVIAGEISG----DLLAGDLIKSLKEMVSYPINLVGVG--GPSLQKEGLVSLFDFSELSVIGIMQ-VVRHLPQFI 74 (383)
Q Consensus 2 ~~mki~i~aGE~SG----D~~~a~li~~Lk~~~~~~~~~~giG--G~~m~~~G~~~~~~~~~l~v~G~~e-vl~~~~~~~ 74 (383)
++|||.++...-+| ..+...|+.+|.+. ..++++.-+. ++.-+.. ...+....... .-..+.+..
T Consensus 1 ~~MKIlfi~~~l~~~GGaErvl~~La~~L~~~-~~~~~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 72 (361)
T PRK09922 1 KKMKIAFIGEAVSGFGGMETVISNVINTFENS-KINCEMFFFCRNDKMDKAW-------LKKIKYAQSFSNIKLSFLRRA 72 (361)
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCHHH-------HHCCCCEEECCCCCCCHHHHH
T ss_conf 97099999999999880499999999999871-9987999993498541557-------644772243366552024578
Q ss_pred HHHHHHHHHCCCCCCCEEEEECHHHHH-HHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHH--HHHHHHHHHCCCCCCCH
Q ss_conf 999999861001288868985117765-799998663013463111100221100366355--79999986401567742
Q gi|254780767|r 75 FRINQTVELIVSSKPDVLLIVDNPDFT-HRVAKRVRKKMPNLPIINYVCPSVWAWREGRAR--KMCAYINQVISILPFEK 151 (383)
Q Consensus 75 ~~~~~~~~~i~~~~Pd~vi~iD~pgFn-l~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k--~~~~~~d~~~~ifpFE~ 151 (383)
+....+.+.+++.+||+++..+..... .+++++. .+..++++++ ++... ...+.. ...++.|..+++-....
T Consensus 73 ~~~~~l~~~ik~~~~Dii~~~~~~~~~~~~~~~~~--~~~~~~ii~~--~h~~~-~~~~~~~~~~~~~~d~~i~vS~~~~ 147 (361)
T PRK09922 73 KHVYNFSQWLKETSPDIVICIDVISCLYANKARKK--SGKQFKIFSW--PHFSL-DHKKHAECITLVYADYHLAISSGIK 147 (361)
T ss_pred HHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHH--CCCCCEEEEE--CCCCH-HHHHHHHHHHHHHCCEEEEECHHHH
T ss_conf 99999999999709999999880689999999998--2999589997--55653-4267899899985885699578999
Q ss_pred HHHHCCCCC---CEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCE
Q ss_conf 232002553---14763882112210013558889761876556505998538743012305111899987640273512
Q gi|254780767|r 152 EVMQRLGGP---PTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFR 228 (383)
Q Consensus 152 ~~f~k~~~~---~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~ 228 (383)
+.+.+. ++ ++..+-||+-.... ..+.. ..+.+...+.-|.=.-+=.+++..+++++.++ .++.+
T Consensus 148 ~~~~~~-~~~~~ki~vI~N~i~~~~~-~~~~~--------~~~~~~~il~vGRl~~~~qK~~~~li~a~~~~---~~~~~ 214 (361)
T PRK09922 148 EQMIAR-GISAQRISVIYNPVEIKTI-IIPPP--------ERDKPAVFLYVGRLKFEGQKNVKELFDGLSRT---TGEWQ 214 (361)
T ss_pred HHHHHC-CCCHHCEEEEECCCCHHHC-CCCCH--------HHCCCCEEEEEECCCCCCCCCHHHHHHHHHHH---CCCCE
T ss_conf 999970-9975429999599173540-46750--------31578779999544452568999999999854---89948
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCEEEEEC--CC----CHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCC
Q ss_conf 620166336889999996048885055205--52----035788763552331-----1566888762753025405774
Q gi|254780767|r 229 FSLVTVSSQENLVRCIVSKWDISPEIIIDK--EQ----KKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEW 297 (383)
Q Consensus 229 ~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~----~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~ 297 (383)
+.+....+.++.+++..++.++..+|.+.. .+ ..+.++.||+.+.+| |.+-||++.+|+|.|..--.+.
T Consensus 215 L~IvG~G~~~~~L~~~i~~l~l~~~V~flG~~~np~~~l~~~~~~adifVl~S~~EGfp~vllEAma~G~PvIatd~~~G 294 (361)
T PRK09922 215 LHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSNPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG 294 (361)
T ss_pred EEEEEEECCHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHCCCEEEECCCCC
T ss_conf 99998438899999999983898738990675987999999985134999647556887289999995998999759999
Q ss_pred CEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHH
Q ss_conf 1000010246761023024407842612420548989999999998449899999
Q gi|254780767|r 298 IVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRA 352 (383)
Q Consensus 298 lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~ 352 (383)
... ||-+.+ -= ++-+.-+++.+++++.++++|......
T Consensus 295 ~~E---------------iI~dg~-nG-~Lv~~~d~~~la~~i~~li~~e~~~~~ 332 (361)
T PRK09922 295 PRD---------------IIKPGL-NG-ELYTPGNIDEFVGKLNKVISGEVKYQH 332 (361)
T ss_pred CHH---------------HHCCCC-CE-EEECCCCHHHHHHHHHHHHHCHHHCCH
T ss_conf 088---------------715898-37-997799999999999999848221399
No 50
>pfam04101 Glyco_tran_28_C Glycosyltransferase family 28 C-terminal domain. The glycosyltransferase family 28 includes monogalactosyldiacylglycerol synthase (EC 2.4.1.46) and UDP-N-acetylglucosamine transferase (EC 2.4.1.-). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.
Probab=99.29 E-value=4.2e-11 Score=93.20 Aligned_cols=158 Identities=16% Similarity=0.187 Sum_probs=111.2
Q ss_pred EEEEEECCCCCC-HHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 059985387430-1230511189998764027351262016633688999999604888505520552035788763552
Q gi|254780767|r 194 KILLLPGSRAQE-IYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAM 272 (383)
Q Consensus 194 ~I~llPGSR~~E-I~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd~ai 272 (383)
+|+++.||..++ +.+.+| ++...+.....+++++..+.....+.++..+.+.+.+..+....++..++|+.||++|
T Consensus 1 TiLV~GGSqGa~~lN~~v~---~~~~~~~~~~~~~~vihq~G~~~~~~~~~~~~~~~~~~~~~~f~~~m~~~~~~adlvI 77 (167)
T pfam04101 1 TIFVTGGSQGAQALNRLVL---EVDPLLELKGIEYQVLHQTGKSDYEPVNCKYSKFGINVEVFPFIDNMAEYIKAADLVI 77 (167)
T ss_pred CEEEEECHHHHHHHHHHHH---HHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCHHH
T ss_conf 9899954488999999999---9999987539982999985973589999998605998899712555999999660688
Q ss_pred CCCHHHHH-HHHHHCCCEEEECCCCC---CEEEEEE-CCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCH
Q ss_conf 33115668-88762753025405774---1000010-2467610230244078426124205489899999999984498
Q gi|254780767|r 273 AASGTVIL-ELALCGIPVVSIYKSEW---IVNFFIF-YIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDT 347 (383)
Q Consensus 273 ~~SGTaTL-E~al~g~P~IV~Yk~~~---lt~~i~~-lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~ 347 (383)
+.+|+.|+ |++..|+|+|++---+. ..+.-++ +.+.- .+ .++ .|.+++++.|.+.+.+++.|+
T Consensus 78 sRaGa~Ti~E~~~~g~P~IliP~p~~~~~hQ~~NA~~l~~~g-aa--------~~i---~e~~~~~~~L~~~i~~l~~~~ 145 (167)
T pfam04101 78 SRAGAGTIAELLALGKPAILVPRPKAAGEHQDNNALELVKAG-AA--------LVL---LQKELTPEKLVEALLKLLLKP 145 (167)
T ss_pred HCCCCHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCC-CE--------EEE---ECCCCCHHHHHHHHHHHHCCH
T ss_conf 657622799999948998997076556563999999999879-98--------996---426799999999999998699
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 99999999999999983899998
Q gi|254780767|r 348 LQRRAMLHGFENLWDRMNTKKPA 370 (383)
Q Consensus 348 ~~r~~~~~~~~~~~~~Lg~~~~a 370 (383)
+.+++|.++.+ +++.+.++
T Consensus 146 ~~l~~m~~~a~----~~~~~da~ 164 (167)
T pfam04101 146 LRLYEMNKAAK----GSRLKDAI 164 (167)
T ss_pred HHHHHHHHHHH----HCCCCCHH
T ss_conf 99999999998----44894845
No 51
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.17 E-value=8.4e-09 Score=78.05 Aligned_cols=305 Identities=16% Similarity=0.148 Sum_probs=181.9
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEE--E--EECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHH
Q ss_conf 459999768214789999999999738998399--9--971789994788065044453110136746645999999999
Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINL--V--GVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQ 79 (383)
Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~--~--giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~ 79 (383)
||++|=.|-+---.....++.+|+++ +..+-+ + |.-++.|...|++ .+.++-.|..-.--++-.-..+...
T Consensus 1 mkVwiDI~n~~hvhfFk~lI~elekk-G~ev~iT~rd~~~v~~LLd~ygf~----~~~Igk~g~~tl~~Kl~~~~eR~~~ 75 (346)
T COG1817 1 MKVWIDIGNPPHVHFFKNLIWELEKK-GHEVLITCRDFGVVTELLDLYGFP----YKSIGKHGGVTLKEKLLESAERVYK 75 (346)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHC-CEEEEEEEEECCCHHHHHHHHCCC----EEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 93799758961023899999999857-849999985127588999983997----0764045774478999999999999
Q ss_pred HHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEC-CCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCC
Q ss_conf 9861001288868985117765799998663013463111100-221100366355799999864015677422320025
Q gi|254780767|r 80 TVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVC-PSVWAWREGRARKMCAYINQVISILPFEKEVMQRLG 158 (383)
Q Consensus 80 ~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~-PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k~~ 158 (383)
+.+.+.+++||+.+.+-+|. +++... +.|+|.|.++- ||-=+= . |.+..++|.+++-=.+..+.-.+.+
T Consensus 76 L~ki~~~~kpdv~i~~~s~~----l~rvaf--gLg~psIi~~D~ehA~~q-n---kl~~Pla~~ii~P~~~~~~~~~~~G 145 (346)
T COG1817 76 LSKIIAEFKPDVAIGKHSPE----LPRVAF--GLGIPSIIFVDNEHAEAQ-N---KLTLPLADVIITPEAIDEEELLDFG 145 (346)
T ss_pred HHHHHHHCCCCEEEECCCCC----HHHHHH--HCCCCEEEECCCHHHHHH-H---HCCHHHHHHEECCCCCCHHHHHHHC
T ss_conf 99987522985575227810----556776--528863896487547778-6---3000244215064344357788708
Q ss_pred CCCEEECCCCCCCCC---CCCCCHHHHHHHCCCCCCCCEEEEEECCCCCC---HHHHCCCHHHHHHHHHHCCCCCEEEEC
Q ss_conf 531476388211221---00135588897618765565059985387430---123051118999876402735126201
Q gi|254780767|r 159 GPPTTFVGHPLSSSP---SILEVYSQRNKQRNTPSQWKKILLLPGSRAQE---IYKILPFFESAVASLVKRNPFFRFSLV 232 (383)
Q Consensus 159 ~~~~~fVGHPl~d~~---~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~E---I~~~lP~~l~~~~~l~~~~~~~~~~i~ 232 (383)
.-+..|+|.+=..+. ....+..+..+++|+..+.+.|.+=|-|-.+- =.+...+..+.++.+.+. + ..++|
T Consensus 146 ~~p~~i~~~~giae~~~v~~f~pd~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~-g--iV~ip 222 (346)
T COG1817 146 ADPNKISGYNGIAELANVYGFVPDPEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKKY-G--IVLIP 222 (346)
T ss_pred CCCCCEECCCCEEEEEECCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHC-C--EEEEC
T ss_conf 89552113566267731026798878998758887986699964344542343322256688899988757-2--89955
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEE
Q ss_conf 66336889999996048885055205520357887635523311566888762753025405774100001024676102
Q gi|254780767|r 233 TVSSQENLVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAASGTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCA 312 (383)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~ 312 (383)
....+. +....+.... +--.-.++.+++-.|++.+.+|||..-|+|++|+|.|-||---.+ +.=+.++.. |
T Consensus 223 r~~~~~----eife~~~n~i-~pk~~vD~l~Llyya~lvig~ggTMarEaAlLGtpaIs~~pGkll-~vdk~lie~---G 293 (346)
T COG1817 223 REKEQA----EIFEGYRNII-IPKKAVDTLSLLYYATLVIGAGGTMAREAALLGTPAISCYPGKLL-AVDKYLIEK---G 293 (346)
T ss_pred CCHHHH----HHHHHHCCCC-CCCCCCCHHHHHHHHHEEECCCCHHHHHHHHHCCCEEEECCCCCC-CCCHHHHHC---C
T ss_conf 755689----9874101105-885552278788654156417703788888728834785388533-223898866---8
Q ss_pred EEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHH
Q ss_conf 302440784261242054898999999999844989
Q gi|254780767|r 313 LPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTL 348 (383)
Q Consensus 313 LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~ 348 (383)
++-+.+++..+.+.+.+.+.++.
T Consensus 294 -------------~~~~s~~~~~~~~~a~~~l~~~~ 316 (346)
T COG1817 294 -------------LLYHSTDEIAIVEYAVRNLKYRR 316 (346)
T ss_pred -------------CEEECCCHHHHHHHHHHHHHCHH
T ss_conf -------------43431788899999999842500
No 52
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.12 E-value=2.3e-08 Score=75.18 Aligned_cols=339 Identities=17% Similarity=0.142 Sum_probs=176.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHC-CCE---EEECHHH---CCEEEHHHHHHHHHHHHHHH
Q ss_conf 5999976821478999999999973899839999717899947-880---6504445---31101367466459999999
Q gi|254780767|r 5 KIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKE-GLV---SLFDFSE---LSVIGIMQVVRHLPQFIFRI 77 (383)
Q Consensus 5 ki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~-G~~---~~~~~~~---l~v~G~~evl~~~~~~~~~~ 77 (383)
||.+++|--+-=..-+.|+++|++..+-+..+ -++|.+.... |.. ..+.... +.++|=. -...-......
T Consensus 1 KI~~vtGtRae~~kl~pl~~~l~~~~~~~~~l-i~TGqH~~~~~g~t~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 77 (363)
T cd03786 1 KILVVTGTRPEYIKLAPLIRALKKDPGFELVL-VVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDS--QSLGAQTAGLL 77 (363)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHHCCCCCEEE-EEECCCCCHHCCCHHHHHHCCCCCCEEEECCCCC--CCHHHHHHHHH
T ss_conf 98999931371999999999997489998899-9938976701088899982688887785459999--76999999999
Q ss_pred HHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCC-CCCCCCCHHHHHHHHHHHCCC-CCCCHHHHH
Q ss_conf 999861001288868985117765799998663013463111100221-100366355799999864015-677422320
Q gi|254780767|r 78 NQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSV-WAWREGRARKMCAYINQVISI-LPFEKEVMQ 155 (383)
Q Consensus 78 ~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~Pqv-WAWr~~R~k~~~~~~d~~~~i-fpFE~~~f~ 155 (383)
..+.+.+.+.+||+|+.. .|=+=-+|-.+-....+||++|.-+=-. |-|+.= =...+..+|++..+ |.-.++..+
T Consensus 78 ~~~~~~l~~~kPD~VlV~--GDr~e~la~Alaa~~~~Ipi~HiegG~rs~~~~~~-de~~R~~i~kls~lhf~~t~~~~~ 154 (363)
T cd03786 78 IGLEAVLLEEKPDLVLVL--GDTNETLAAALAAFKLGIPVAHVEAGLRSFDRGMP-DEENRHAIDKLSDLHFAPTEEARR 154 (363)
T ss_pred HHHHHHHHHHCCCEEEEE--CCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC-CHHHHHHHHHCCCEEECCCHHHHH
T ss_conf 999999997299999994--88842879999999819818996264334767998-779875522101256146199999
Q ss_pred CC--CC---CCEEECCCCCCCCCCCCCC--HHHHHHHCCCCCCCCEEEEEECCCCCC-HHHHCCCHHHHHHHHHHCCCCC
Q ss_conf 02--55---3147638821122100135--588897618765565059985387430-1230511189998764027351
Q gi|254780767|r 156 RL--GG---PPTTFVGHPLSSSPSILEV--YSQRNKQRNTPSQWKKILLLPGSRAQE-IYKILPFFESAVASLVKRNPFF 227 (383)
Q Consensus 156 k~--~~---~~~~fVGHPl~d~~~~~~~--~~~~~~~~~~~~~~~~I~llPGSR~~E-I~~~lP~~l~~~~~l~~~~~~~ 227 (383)
+. .| -++..||+|..|.+..... ........+...+++.+++.-=-+..+ -+..+..+++++..+... ++
T Consensus 155 ~L~~~G~~~~~I~~vG~~~iD~l~~~~~~~~~~~~~~~~~~~~~~~~lvt~Hr~~n~~~~~~~~~i~~al~~~~~~--~~ 232 (363)
T cd03786 155 NLLQEGEPPERIFVVGNTMIDALLRLLELAKKELILELLGLLPKKYILVTLHRVENVDDGEQLEEILEALAELAEE--DV 232 (363)
T ss_pred HHHHHCCCCCCEEECCCCHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CC
T ss_conf 9986154755257738619999998876410326677445455877999964523335689999999999998743--96
Q ss_pred EEEECCCCCHHHHHHHHHHHCC-CCCEEEEEC----CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEE-CCCCCCEEE
Q ss_conf 2620166336889999996048-885055205----5203578876355233115668887627530254-057741000
Q gi|254780767|r 228 RFSLVTVSSQENLVRCIVSKWD-ISPEIIIDK----EQKKQVFMTCNAAMAASGTVILELALCGIPVVSI-YKSEWIVNF 301 (383)
Q Consensus 228 ~~~i~~~~~~~~~~~~~~~~~~-~~~~i~~~~----~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~-Yk~~~lt~~ 301 (383)
.|+.|..+.....+.....++. ...++.+.. .+...++..|+++|+=||..--|+..+|+|+|++ -++.+-..
T Consensus 233 ~v~~pn~d~~~~~i~~~~~~~~~~~~~i~~~~~l~~~~~~~ll~~a~~vigdSsGi~Eea~~l~~P~i~ir~rqe~re~- 311 (363)
T cd03786 233 PVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSGGIQEEASFLGVPVLNLRDRTERPET- 311 (363)
T ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCEEEEECCCCCEEEECCCCCCEEEECCCCCCCEE-
T ss_conf 8999779725778999999985578779997887749999999507399825888688502069878982687767342-
Q ss_pred EEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 01024676102302440784261242054898999999999844989999999999999998389999899999999
Q gi|254780767|r 302 FIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAEIV 378 (383)
Q Consensus 302 i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I 378 (383)
.+.+ .|.+ + ..+.+.|.+++..++++........ ..-.| .|.++++..+++
T Consensus 312 ------~~~~--~~~~---------v--~~~~~~I~~~i~~~l~~~~~~~~~~------~npyG-dG~as~rI~~iL 362 (363)
T cd03786 312 ------VESG--TNVL---------V--GTDPEAILAAIEKLLSDEFAYSLMS------INPYG-DGNASERIVEIL 362 (363)
T ss_pred ------HHCC--EEEE---------C--CCCHHHHHHHHHHHHCCHHHHHCCC------CCCCC-CCHHHHHHHHHH
T ss_conf ------1005--4886---------5--8999999999999975703453558------99897-987999999986
No 53
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.11 E-value=5.1e-08 Score=72.85 Aligned_cols=320 Identities=13% Similarity=0.056 Sum_probs=169.5
Q ss_pred ECCCCHHHH-HHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHH-HHHHHHHHHHHHHHHCCCC
Q ss_conf 768214789-99999999973899839999717899947880650444531101367466-4599999999998610012
Q gi|254780767|r 10 AGEISGDLL-AGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVR-HLPQFIFRINQTVELIVSS 87 (383)
Q Consensus 10 aGE~SGD~~-~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~-~~~~~~~~~~~~~~~i~~~ 87 (383)
+-...|.-. -..|++.+++. +.++++.=+-|+..--.-.+.+.+.-+-.-..+.+--. .|... ......+.....
T Consensus 8 T~~gGGVa~~l~~Lv~~~~~l-Gv~~~w~V~~~~~~ff~~tk~~hn~Lqg~~~~ls~~~~~~y~~~--~~~na~~~~~~~ 84 (372)
T cd03792 8 TPYGGGVAEILHSLVPLMRDL-GVDTRWEVIKGDPEFFNVTKKFHNALQGADIELSEEEKEIYLEW--NEENAERPLLDL 84 (372)
T ss_pred CCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCCHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHH--HHHHHHCCCCCC
T ss_conf 998876999999999999966-98169999459835789887500654199976798899999999--999873131027
Q ss_pred CCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEE-----CCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCC--
Q ss_conf 8886898511776579999866301346311110-----022110036635579999986401567742232002553--
Q gi|254780767|r 88 KPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYV-----CPSVWAWREGRARKMCAYINQVISILPFEKEVMQRLGGP-- 160 (383)
Q Consensus 88 ~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv-----~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~-- 160 (383)
..|+|+ |+.|- -+.+.+..++ .+.|+|+-. .|+--+|.-- +..-+.+|....-. ++|... ++
T Consensus 85 ~~DvV~-iHdpq-p~~l~~~~~~--~~~~~I~r~Hid~~~~~~~~w~fl--~~~i~~~d~~V~~~---~~~~~~--~~~~ 153 (372)
T cd03792 85 DADVVV-IHDPQ-PLALPLFKKK--RGRPWIWRCHIDLSSPNRRVWDFL--QPYIEDYDAAVFHL---PEYVPP--QVPP 153 (372)
T ss_pred CCCEEE-ECCCC-HHHHHHHHHC--CCCCEEEEECCCCCCCHHHHHHHH--HHHHHHCCEEEEEC---HHHHCC--CCCC
T ss_conf 999899-87936-6789998636--899589996886688538899999--99998579999973---575043--6887
Q ss_pred CEEECCCCCCCCC----C--CCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 1476388211221----0--013558889761876556505998538743012305111899987640273512620166
Q gi|254780767|r 161 PTTFVGHPLSSSP----S--ILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTV 234 (383)
Q Consensus 161 ~~~fVGHPl~d~~----~--~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~ 234 (383)
+..++- |-.|.. . ...+....+++.|+++++++|+.. ||-.. .+....++++..++.++.|+.++++...
T Consensus 154 ~~~~ip-~~IDpl~~kn~~l~~~~~~~~~~~~gi~~d~piIl~V--gRl~~-~Kg~~~li~A~~~~~~~~~d~~LvivG~ 229 (372)
T cd03792 154 RKVIIP-PSIDPLSGKNRELSPADIEYILEKYGIDPERPYITQV--SRFDP-WKDPFGVIDAYRKVKERVPDPQLVLVGS 229 (372)
T ss_pred CEEEEC-CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEE--EECCC-CCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 647816-7106677434558989999999982989899589998--72565-4686999999999997689978999899
Q ss_pred CCH-----HHHHHHHHHHCCCCCEEEEEC--C----CCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCC
Q ss_conf 336-----889999996048885055205--5----2035788763552331-----15668887627530254057741
Q gi|254780767|r 235 SSQ-----ENLVRCIVSKWDISPEIIIDK--E----QKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEWI 298 (383)
Q Consensus 235 ~~~-----~~~~~~~~~~~~~~~~i~~~~--~----~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~l 298 (383)
... ....++..........+.+.. . ....+++.||+.+..| |-+.+|++.+|+|.| +..++.+
T Consensus 230 g~~ddpe~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~adv~v~~S~~Egfgl~~lEAm~~G~PVV-as~vgGi 308 (372)
T cd03792 230 GATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVI-AGPVGGI 308 (372)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHCCCCEE-ECCCCCC
T ss_conf 877781478999999997188996699936888678999999539799957642344469999998699899-8379983
Q ss_pred EEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHCCC
Q ss_conf 000010246761023024407842612420548989999999998449899999999-999999983899
Q gi|254780767|r 299 VNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLH-GFENLWDRMNTK 367 (383)
Q Consensus 299 t~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~-~~~~~~~~Lg~~ 367 (383)
...+..- .-|+ ++| +++.++..+.++++|++.|++|-+ +.+.+++.....
T Consensus 309 ~e~v~dg----~~G~--------Lv~-------~~d~~A~~i~~ll~d~~l~~~mg~~ar~~v~~~f~~~ 359 (372)
T cd03792 309 PLQIEDG----ETGF--------LVD-------TVEEAAVRILYLLRDPELRRKMGANAREHVRENFLIT 359 (372)
T ss_pred HHHCCCC----CCEE--------ECC-------CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 7760489----8579--------889-------8699999999997499999999999999999878999
No 54
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.08 E-value=1.8e-07 Score=69.29 Aligned_cols=315 Identities=14% Similarity=0.080 Sum_probs=155.2
Q ss_pred HHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEE-CHHHCCEEEHH----HHHHHHHHHHHHHHHHHHHC-CCCCCCEEEE
Q ss_conf 999999973899839999717899947880650-44453110136----74664599999999998610-0128886898
Q gi|254780767|r 21 DLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLF-DFSELSVIGIM----QVVRHLPQFIFRINQTVELI-VSSKPDVLLI 94 (383)
Q Consensus 21 ~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~-~~~~l~v~G~~----evl~~~~~~~~~~~~~~~~i-~~~~Pd~vi~ 94 (383)
.|.++|.++ +.++.+..-+.+.-...|++.+. ........+.. ........-......+.... ..++||+|..
T Consensus 15 ~LA~~La~r-GHeV~Vit~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDvVh~ 93 (396)
T cd03818 15 HLAPALAAQ-GHEVVFLTEPNAAPPPGGVRVVRYRPPRGPTSGTHPYLREFEEAVLRGQAVARALLALRAKGFRPDVIVA 93 (396)
T ss_pred HHHHHHHHC-CCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 999999978-9989999689998899972688853368887777732344788888789999999999971899988998
Q ss_pred ECHHHHHHHHHHHHHHHCCCCCCEEEEC----C------------CCCCCCCCCHHHH-------HHHHHHHCCCCCCCH
Q ss_conf 5117765799998663013463111100----2------------2110036635579-------999986401567742
Q gi|254780767|r 95 VDNPDFTHRVAKRVRKKMPNLPIINYVC----P------------SVWAWREGRARKM-------CAYINQVISILPFEK 151 (383)
Q Consensus 95 iD~pgFnl~lak~lkk~~~~ipvi~yv~----P------------qvWAWr~~R~k~~-------~~~~d~~~~ifpFE~ 151 (383)
=...+..+-+ +...+++|++.|+. + +-|.| ..|.+.. ....|...+-=.++.
T Consensus 94 H~~~~~~l~l----~~~~p~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ad~~v~~s~~~~ 168 (396)
T cd03818 94 HPGWGETLFL----KDVWPDAPLIGYFEFYYRAEGADVGFDPEFPPSLDD-ALRLRNRNALILLALAQADAGVSPTRWQR 168 (396)
T ss_pred CCCHHHHHHH----HHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHCCEEECCCHHHH
T ss_conf 8705899999----985656878876412410365446778333655668-99999988888888984878871889999
Q ss_pred HHHHCCCCCCEEECCCCCCCC--CCCCC-CHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCE
Q ss_conf 232002553147638821122--10013-558889761876556505998538743012305111899987640273512
Q gi|254780767|r 152 EVMQRLGGPPTTFVGHPLSSS--PSILE-VYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFR 228 (383)
Q Consensus 152 ~~f~k~~~~~~~fVGHPl~d~--~~~~~-~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~ 228 (383)
+-|...-.-+++.+-|- +|. +.+.. .............++++|+. -| |.-|=.+.++.+++++.++.++.|+.+
T Consensus 169 ~~~~~~~~~~i~VipnG-VD~~~f~P~~~a~~~~~~~~~~~~~~~vvl~-vG-R~l~~~KG~~~Ll~A~~~l~~~~p~~~ 245 (396)
T cd03818 169 STFPAELRSRISVIHDG-IDTDRLRPDPQARLRLPNGRVLTPGDEVITF-VA-RNLEPYRGFHVFMRALPRLLRARPDAR 245 (396)
T ss_pred HHHHHHHCCCEEEEECC-CCCCCCCCCHHHHHHHHHCCCCCCCCEEEEE-EC-CCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 75267624837998268-7713338880455544211468999869999-77-651304489999999999998789968
Q ss_pred EEECCCCC---------HH---HHHHHHHHHCCCCCEEEE----ECCCCHHHHHHHHHHHCCC-----HHHHHHHHHHCC
Q ss_conf 62016633---------68---899999960488850552----0552035788763552331-----156688876275
Q gi|254780767|r 229 FSLVTVSS---------QE---NLVRCIVSKWDISPEIII----DKEQKKQVFMTCNAAMAAS-----GTVILELALCGI 287 (383)
Q Consensus 229 ~~i~~~~~---------~~---~~~~~~~~~~~~~~~i~~----~~~~~~~~l~~sd~ai~~S-----GTaTLE~al~g~ 287 (383)
+++...+. .. +.....+........+.+ ..++..+.|+.||+.+..| |.+.||++.+|+
T Consensus 246 lvivG~~~~~~g~~~~~~~~~~~~ll~~l~~~~~~~rV~F~G~v~~~~l~~~l~~adv~v~PS~~~~~~~~llEAMA~G~ 325 (396)
T cd03818 246 VVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGC 325 (396)
T ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHEEEEEEECCEECCCCCHHHHHHHCCC
T ss_conf 99992687445666765437999999863223676368970898589998875100399953140455760899997799
Q ss_pred CEEEECCCCCCEEEEEECCCCCCEEEEHHHCCC---CCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 302540577410000102467610230244078---42612420548989999999998449899999999999999983
Q gi|254780767|r 288 PVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDY---PLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRM 364 (383)
Q Consensus 288 P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~---~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~L 364 (383)
| ||...+..+.. ++-+. -++| --+++.++..+.++++|++.|++|-++.++.-++.
T Consensus 326 P-VVas~~gg~~e---------------~V~dg~~G~Lvp-----p~d~~~LA~ai~~lL~dp~~r~~lg~aaR~~~~~~ 384 (396)
T cd03818 326 L-VVGSDTAPVRE---------------VITDGENGLLVD-----FFDPDALAAAVIELLDDPARRARLRRAARRTALRY 384 (396)
T ss_pred C-EEEECCCCCHH---------------HHCCCCCEEEEC-----CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 8-99927998265---------------525998789969-----99999999999999759999999999999999998
Q ss_pred C
Q ss_conf 8
Q gi|254780767|r 365 N 365 (383)
Q Consensus 365 g 365 (383)
-
T Consensus 385 ~ 385 (396)
T cd03818 385 D 385 (396)
T ss_pred H
T ss_conf 4
No 55
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.02 E-value=1.2e-07 Score=70.36 Aligned_cols=317 Identities=13% Similarity=0.051 Sum_probs=157.8
Q ss_pred CCEEEEEECCCCHHHH-HHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHH
Q ss_conf 7459999768214789-999999999738998399997178999478806504445311013674664599999999998
Q gi|254780767|r 3 SLKIAVIAGEISGDLL-AGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTV 81 (383)
Q Consensus 3 ~mki~i~aGE~SGD~~-~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~ 81 (383)
.|||+|+--..=||+. ...+++.||+..| ++++.-++.+.-... +...-.++.+-.+ +.-++- .-++.+..+.
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P-~a~i~~~~~~~~~~i-~~~~p~I~~vi~~---~~~~~~-~~~~~~~~l~ 74 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYP-NAKIDVLVPKGFAPI-LKLNPEIDKVIII---DKKKKG-LGLKERLALL 74 (334)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCC-CCEEEEEECCCHHHH-HHCCCCHHEEEEC---CCCCCC-HHHHHHHHHH
T ss_conf 907999955740137769999999998789-977999955431467-7559524168511---211212-1389999999
Q ss_pred HHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCC
Q ss_conf 61001288868985117765799998663013463111100221100366355799999864015677422320025531
Q gi|254780767|r 82 ELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQRLGGPP 161 (383)
Q Consensus 82 ~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~~ 161 (383)
+.+++++.|+||-.- -+++-|..... .++|.-. .+ .++..|--....+..+ +.++......+++.. -
T Consensus 75 ~~lr~~~yD~vidl~---~~~ksa~l~~~--~~~~~r~--g~---~~~~~r~~~~~~~~~~--~~~~~~~~~~~~~~~-l 141 (334)
T COG0859 75 RTLRKERYDAVIDLQ---GLLKSALLALL--LGIPFRI--GF---DKKSARELLLNKFYPR--LDKPEGQHVVERYLA-L 141 (334)
T ss_pred HHHCCCCCCEEEECH---HHHHHHHHHHH--HCCCCEE--CC---CCHHHHHHHHHHCCCC--CCCCCHHHHHHHHHH-H
T ss_conf 983146867899740---25889999997--3898363--14---5077777777630244--565402459999999-9
Q ss_pred EEECCCCCCC--C--CCCCCCHHHHHHHCCCCCCCCEEEEEEC-CCCCCHHHHCC--CHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 4763882112--2--1001355888976187655650599853-87430123051--11899987640273512620166
Q gi|254780767|r 162 TTFVGHPLSS--S--PSILEVYSQRNKQRNTPSQWKKILLLPG-SRAQEIYKILP--FFESAVASLVKRNPFFRFSLVTV 234 (383)
Q Consensus 162 ~~fVGHPl~d--~--~~~~~~~~~~~~~~~~~~~~~~I~llPG-SR~~EI~~~lP--~~l~~~~~l~~~~~~~~~~i~~~ 234 (383)
....|.+..+ . .................. +++|++.|| ||.+ .+.+| -+.+.++.+.++. ++++++..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~pg~s~~~--~K~wp~e~~~~l~~~l~~~~--~~Vvl~g~ 216 (334)
T COG0859 142 LEDLGLYPPPEPQLDFPLPRPPIELAKNLAKFD-RPYIVINPGASRGS--AKRWPLEHYAELAELLIAKG--YQVVLFGG 216 (334)
T ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEEECCCCCCC--CCCCCHHHHHHHHHHHHHCC--CEEEEEEC
T ss_conf 876079876677555455547888986542037-98799964734667--78899999999999999769--98999408
Q ss_pred CCHHHHHHHHHHHCCCCCEE--EEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCEEE-----EEECCC
Q ss_conf 33688999999604888505--52055203578876355233115668887627530254057741000-----010246
Q gi|254780767|r 235 SSQENLVRCIVSKWDISPEI--IIDKEQKKQVFMTCNAAMAASGTVILELALCGIPVVSIYKSEWIVNF-----FIFYIK 307 (383)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~Yk~~~lt~~-----i~~lik 307 (383)
++..+..+.+.+.......+ ...-.+.-.+++.||++|+...-.+-=+|.+|+|+|.+|-.+.-+++ ....+.
T Consensus 217 ~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~l~I~~DSg~~HlAaA~~~P~I~iyg~t~~~~~~p~~~~~~~~~ 296 (334)
T COG0859 217 PDEEERAEEIAKGLPNAVILAGKTSLEELAALIAGADLVIGNDSGPMHLAAALGTPTIALYGPTSPAFTPPPDPKLPGIS 296 (334)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCEEECCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 78999999999736766121799999999999966989991488799999873998899988987555788665443443
Q ss_pred CCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCC
Q ss_conf 761023024407842612420548989999999998449
Q gi|254780767|r 308 TWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQD 346 (383)
Q Consensus 308 ~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d 346 (383)
..+-..+.-..+ -++---++.+++.+..++..++..
T Consensus 297 ~~~~~~~~~~~~---~~~~~~~~i~~~~v~~~~~~~~~~ 332 (334)
T COG0859 297 GNLDCSPCKPSG---GHHECLKDIEPEKVLEAAEALLAT 332 (334)
T ss_pred CCCCCCCCCCCC---CCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 555555256678---755564559989999999987641
No 56
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.99 E-value=1.3e-07 Score=70.24 Aligned_cols=291 Identities=14% Similarity=0.207 Sum_probs=166.8
Q ss_pred CEEEEEE--CCCCHHHH--HH-HHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHH
Q ss_conf 4599997--68214789--99-9999999738998399997178999478806504445311013674664599999999
Q gi|254780767|r 4 LKIAVIA--GEISGDLL--AG-DLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRIN 78 (383)
Q Consensus 4 mki~i~a--GE~SGD~~--~a-~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~ 78 (383)
|||.|.| |-.+|=-| -. .|.++|++. +.++..++++.-++ +.. . ..+..++.+ -
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~---~~~~~fl~k~~~e~-~~~---~--~~~~f~~~~------------~ 59 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKR---GFACLFLTKQDIEA-IIH---K--VYEGFKVLE------------G 59 (318)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHC---CCEEEEECCCCHHH-HHH---H--HHHHCCCEE------------E
T ss_conf 9579992687555751345599999999851---74688840662564-215---6--665104300------------2
Q ss_pred HHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCC
Q ss_conf 99861001288868985117765799998663013463111100221100366355799999864015677422320025
Q gi|254780767|r 79 QTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQRLG 158 (383)
Q Consensus 79 ~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k~~ 158 (383)
+.-..|++.++|++|+ |+-|-|-...|.+|.+ .+-|++++= ....+.++ +.|.++--.--...+|.-.
T Consensus 60 ~~~n~ik~~k~d~lI~-Dsygl~~dd~k~ik~e-~~~k~l~fD--------d~~~~~~~-d~d~ivN~~~~a~~~y~~v- 127 (318)
T COG3980 60 RGNNLIKEEKFDLLIF-DSYGLNADDFKLIKEE-AGSKILIFD--------DENAKSFK-DNDLIVNAILNANDYYGLV- 127 (318)
T ss_pred ECCCCCCCCCCCEEEE-ECCCCCHHHHHHHHHH-HCCCEEEEC--------CCCCCCHH-HHHHHHHHHHCCHHHCCCC-
T ss_conf 3364100366778999-4268887899998897-388179964--------77764225-6673545553511220536-
Q ss_pred CCCE-EECCC---CCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 5314-76388---2112210013558889761876556505998538743012305111899987640273512620166
Q gi|254780767|r 159 GPPT-TFVGH---PLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTV 234 (383)
Q Consensus 159 ~~~~-~fVGH---Pl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~ 234 (383)
.-++ .|.|- |+.+++. ..+++...+ +.+.+..-|.||-.. . +.++++..|.+.+-++.++....
T Consensus 128 ~~k~~~~lGp~y~~lr~eF~--~~r~~~~~r----~~r~ilI~lGGsDpk---~---lt~kvl~~L~~~~~nl~iV~gs~ 195 (318)
T COG3980 128 PNKTRYYLGPGYAPLRPEFY--ALREENTER----PKRDILITLGGSDPK---N---LTLKVLAELEQKNVNLHIVVGSS 195 (318)
T ss_pred CCCEEEEECCCCEECCHHHH--HHHHHHHHC----CHHEEEEECCCCCHH---H---HHHHHHHHHHCCCEEEEEEECCC
T ss_conf 76637996587114169999--868998635----311289971688724---4---59999998403570499994688
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEE-CCCCCCE-E-EEEECCCCCCE
Q ss_conf 3368899999960488850552055203578876355233115668887627530254-0577410-0-00102467610
Q gi|254780767|r 235 SSQENLVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAASGTVILELALCGIPVVSI-YKSEWIV-N-FFIFYIKTWTC 311 (383)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~-Yk~~~lt-~-~i~~lik~~~i 311 (383)
.......+...++. .+.+.....++..++|..||+||++.|..+-|++++|+|..|+ |--|-+. . ++
T Consensus 196 ~p~l~~l~k~~~~~-~~i~~~~~~~dma~LMke~d~aI~AaGstlyEa~~lgvP~l~l~~a~NQ~~~a~~f--------- 265 (318)
T COG3980 196 NPTLKNLRKRAEKY-PNINLYIDTNDMAELMKEADLAISAAGSTLYEALLLGVPSLVLPLAENQIATAKEF--------- 265 (318)
T ss_pred CCCHHHHHHHHHHC-CCEEEEECCHHHHHHHHHCCHHEECCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH---------
T ss_conf 85466788888657-88026862245899998603331446357999998269825876330178887789---------
Q ss_pred EEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 230244078426124205489899999999984498999999999
Q gi|254780767|r 312 ALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHG 356 (383)
Q Consensus 312 ~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~ 356 (383)
....+++++=-+ .++.....++..+.+|+.+|+.....
T Consensus 266 ------~~lg~~~~l~~~-l~~~~~~~~~~~i~~d~~~rk~l~~~ 303 (318)
T COG3980 266 ------EALGIIKQLGYH-LKDLAKDYEILQIQKDYARRKNLSFG 303 (318)
T ss_pred ------HHCCCHHHCCCC-CCHHHHHHHHHHHHHCHHHHHHHHHC
T ss_conf ------866860022677-76187899999864077776422211
No 57
>pfam00534 Glycos_transf_1 Glycosyl transferases group 1. Mutations in this domain of subunit A of phosphatidylinositol N-acetylglucosaminyltransferase lead to disease (Paroxysmal Nocturnal haemoglobinuria). Members of this family transfer activated sugars to a variety of substrates, including glycogen, Fructose-6-phosphate and lipopolysaccharides. Members of this family transfer UDP, ADP, GDP or CMP linked sugars. The eukaryotic glycogen synthases may be distant members of this family.
Probab=98.94 E-value=6.3e-08 Score=72.25 Aligned_cols=160 Identities=21% Similarity=0.247 Sum_probs=109.4
Q ss_pred CHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHC-CCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 5588897618765565059985387430123051118999876402-735126201663368899999960488850552
Q gi|254780767|r 178 VYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKR-NPFFRFSLVTVSSQENLVRCIVSKWDISPEIII 256 (383)
Q Consensus 178 ~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~ 256 (383)
++...|++.+++++++ +.+++|+=. -.+....++++++++.++ ++++.+++..........+...........+.+
T Consensus 1 ~~~~~r~~~~i~~~~~-vi~~~G~~~--~~Kg~~~~i~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~ 77 (172)
T pfam00534 1 DREEERKKLGIPEDKP-IILFVGRLV--PEKGLDLLLEAFALLKEQLHPNLKLVIVGDGEEEKKLKKLALKLGLEDNVIF 77 (172)
T ss_pred CHHHHHHHCCCCCCCE-EEEEECCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEE
T ss_conf 9789999879999995-999965485--5449899999899888740898599998378326789999998399986899
Q ss_pred E----CCCCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHH
Q ss_conf 0----552035788763552331-----1566888762753025405774100001024676102302440784261242
Q gi|254780767|r 257 D----KEQKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYF 327 (383)
Q Consensus 257 ~----~~~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEli 327 (383)
. .++..+.++.||+.+.+| |+.-+|++.+|+|.|+. ..++... ++.+... =-++
T Consensus 78 ~~~~~~~~~~~~l~~sdi~i~ps~~E~~~~~~~Eam~~G~pvI~s-~~~~~~e---------------ii~~~~~-G~~~ 140 (172)
T pfam00534 78 VGFVPREDLIELYRIADLFVLPSRYEGFGLVLLEAMAAGVPVIAS-DVGGPAE---------------IVKDGET-GLLV 140 (172)
T ss_pred ECCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHCCCEEEEE-CCCCHHH---------------HHHCCCE-EEEE
T ss_conf 578898999999997241047736651571189999679719995-6997299---------------9718983-9997
Q ss_pred CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 0548989999999998449899999999999
Q gi|254780767|r 328 NSMIRSEALVRWIERLSQDTLQRRAMLHGFE 358 (383)
Q Consensus 328 Q~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~ 358 (383)
+.-+++.+++++..+++|++.|++|.++.+
T Consensus 141 -~~~~~~~l~~~i~~li~n~~~~~~m~~n~~ 170 (172)
T pfam00534 141 -DPGDAEALAEAIEKLLKDEELRERLGENAR 170 (172)
T ss_pred -CCCCHHHHHHHHHHHHCCHHHHHHHHHHHC
T ss_conf -899999999999999879999999999844
No 58
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.92 E-value=4.8e-06 Score=59.86 Aligned_cols=187 Identities=14% Similarity=0.114 Sum_probs=114.2
Q ss_pred HHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCC--CHHHHHHHHHHHCCCCCEEEE
Q ss_conf 588897618765565059985387430123051118999876402735126201663--368899999960488850552
Q gi|254780767|r 179 YSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVS--SQENLVRCIVSKWDISPEIII 256 (383)
Q Consensus 179 ~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~i~~ 256 (383)
+...++++|++.+....++.-=||-.+ .+-+.++++++..+.+. +.+|++.... ..++.++.....++.+....+
T Consensus 278 k~~l~~~~gl~~~~~~pl~~~vgRl~~-qKG~~ll~~a~~~~~~~--~~~~vi~G~G~~~~~~~l~~l~~~~~~~~~~~~ 354 (476)
T PRK00654 278 KRALQERFGLPVDDDAPLFAMVSRLTE-QKGLDLVLEALDEILEQ--GGQLVLLGTGDPELEEAFRALAARYPGRVGVQI 354 (476)
T ss_pred HHHHHHHHCCCCCCCCCEEEEEEECCC-CCCHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 999999949897899748999851645-67889999999999970--998999945978999999999987798889995
Q ss_pred ECC--CCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCC
Q ss_conf 055--2035788763552331-----156688876275302540577410000102467610230244078426124205
Q gi|254780767|r 257 DKE--QKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNS 329 (383)
Q Consensus 257 ~~~--~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~ 329 (383)
..+ ..+.+++.||+.++.| |-+-||++..|+|-|| -+|+.|.--+.- .|. ..+-..-|+-.
T Consensus 355 gf~e~l~~~iya~aD~~lmPS~~EP~Gl~qleAm~~Gt~Pvv-~~tGGL~dtV~d---------~~~--~~~~~tGf~f~ 422 (476)
T PRK00654 355 GYDEALAHRIYAGADFFLMPSRFEPCGLTQLYALRYGTLPIV-RRTGGLADTVID---------YDP--EDGGATGFVFD 422 (476)
T ss_pred CCCHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHCCCCCEE-ECCCCCCCCCCC---------CCC--CCCCCCEEEEC
T ss_conf 788689899987288786456113677689999876998588-179997551456---------666--77876348737
Q ss_pred CCCHHHHHHHHH---HHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
Q ss_conf 489899999999---984498999999999999999838999989999999998619
Q gi|254780767|r 330 MIRSEALVRWIE---RLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAEIVLQVLG 383 (383)
Q Consensus 330 ~~~~~~i~~~~~---~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~~Lg 383 (383)
+.+++.++.++. .+++|++..+++..+. +.+..+...+|.+ -.++-.++||
T Consensus 423 ~~~~~~l~~ai~~al~~~~~~~~~~~l~~~~--m~~~fsW~~~A~~-y~~lY~~llg 476 (476)
T PRK00654 423 DFNAEDLLTALRRALELYRQPDLWRALQRQA--MAQDFSWDKSAEE-YLELYRRLLG 476 (476)
T ss_pred CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH--HHCCCCCHHHHHH-HHHHHHHHHC
T ss_conf 9999999999999998856999999999998--5237995999999-9999999739
No 59
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.92 E-value=1.2e-06 Score=63.78 Aligned_cols=287 Identities=14% Similarity=0.107 Sum_probs=140.7
Q ss_pred CEEEEEECCC--------CH-HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHH
Q ss_conf 4599997682--------14-78999999999973899839999717899947880650444531101367466459999
Q gi|254780767|r 4 LKIAVIAGEI--------SG-DLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFI 74 (383)
Q Consensus 4 mki~i~aGE~--------SG-D~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~ 74 (383)
|||.+++..- .| ..|...|.++|.++ +.++.++.-++..-.... ....+. . .............
T Consensus 1 MkI~~v~~~~~p~pP~~~GG~e~~~~~La~~L~~~-Gh~V~v~~~~~~~~~~~~-~~~~~~-~----~~~~~~~~~~~~~ 73 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVAR-GHEVTLFASGDSKTAAPL-VPVVPE-P----LRLDAPGRDRAEA 73 (335)
T ss_pred CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCC-CCCCCC-C----CCCCCCCCCHHHH
T ss_conf 98699888400369999897999999999999976-998999962898778850-045676-6----5445442212456
Q ss_pred HHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEC--CCCCCCCCCCHHHHHHHHHHHCCCCCCCHH
Q ss_conf 999999861001288868985117765799998663013463111100--221100366355799999864015677422
Q gi|254780767|r 75 FRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVC--PSVWAWREGRARKMCAYINQVISILPFEKE 152 (383)
Q Consensus 75 ~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~--PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~ 152 (383)
.....+.+.+...+||+|..- ++. .++..++. .++|+++-+- +..|.+..++ .....+.+.++-.....
T Consensus 74 ~~~~~~~~~~~~~~~Dvvh~~-~~~---~~~~~~~~--~~~p~v~t~H~~~~~~~~~~~~---~~~~~~~~i~vS~~~~~ 144 (335)
T cd03802 74 EALALAERALAAGDFDIVHNH-SLH---LPLPFARP--LPVPVVTTLHGPPDPELLKLYY---AARPDVPFVSISDAQRR 144 (335)
T ss_pred HHHHHHHHHHHHCCCCEEEEC-CCH---HHHHHHHH--CCCCEEEEECCCCCHHHHHHHH---HHCCCCEEEECCHHHHH
T ss_conf 899999999975798589989-717---89999862--7997899989997067799997---52358689994599995
Q ss_pred HHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEEC
Q ss_conf 32002553147638821122100135588897618765565059985387430123051118999876402735126201
Q gi|254780767|r 153 VMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLV 232 (383)
Q Consensus 153 ~f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~ 232 (383)
..... -++..|-|++ |. ..+. .. .+.+..+ ++-| |-.+-|. +..++++++. ++.+.++.
T Consensus 145 ~~~~~--~~~~vI~ngv-d~-------~~f~--~~-~~~~~~~-l~vG-Rl~~~KG-~~~li~a~~~-----~~~~L~i~ 203 (335)
T cd03802 145 PWPPL--PWVATVHNGI-DL-------DDYP--FR-GPKGDYL-LFLG-RISPEKG-PHLAIRAARR-----AGIPLKLA 203 (335)
T ss_pred HCCCC--CCEEEECCCC-CH-------HHCC--CC-CCCCCEE-EEEE-ECCCCCC-HHHHHHHHHH-----CCCEEEEE
T ss_conf 45776--7779987998-88-------7679--88-8999789-9999-3363347-6999999874-----59808999
Q ss_pred CCCCH-HHHHHHHHHHCCCCCEEEEE----CCCCHHHHHHHHHHHCCC------HHHHHHHHHHCCCEEEECCCCCCEEE
Q ss_conf 66336-88999999604888505520----552035788763552331------15668887627530254057741000
Q gi|254780767|r 233 TVSSQ-ENLVRCIVSKWDISPEIIID----KEQKKQVFMTCNAAMAAS------GTVILELALCGIPVVSIYKSEWIVNF 301 (383)
Q Consensus 233 ~~~~~-~~~~~~~~~~~~~~~~i~~~----~~~~~~~l~~sd~ai~~S------GTaTLE~al~g~P~IV~Yk~~~lt~~ 301 (383)
..... ................|... ..+..++++.||+.+..| |-+.||++.+|+| ||++..+.+...
T Consensus 204 G~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~~~~a~~~v~pS~~~E~fglv~lEAma~G~P-VVat~~gG~~E~ 282 (335)
T cd03802 204 GPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTP-VIAFRRGAVPEV 282 (335)
T ss_pred ECCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCC-EEECCCCCHHHH
T ss_conf 4767379999999996178995899504683999999997412456765324674799999984998-999289981454
Q ss_pred EEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCH
Q ss_conf 0102467610230244078426124205489899999999984498
Q gi|254780767|r 302 FIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDT 347 (383)
Q Consensus 302 i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~ 347 (383)
+.+.+- =|+-+ +++.++.++.++.+.+
T Consensus 283 ---------------v~~g~~--G~lv~--~~~~la~ai~~~~~~~ 309 (335)
T cd03802 283 ---------------VEDGVT--GFLVD--SVEELAAAVARADRLD 309 (335)
T ss_pred ---------------HCCCCE--EEECC--CHHHHHHHHHHHHHCC
T ss_conf ---------------238961--89819--9999999999875289
No 60
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=98.89 E-value=3.6e-06 Score=60.69 Aligned_cols=312 Identities=13% Similarity=0.172 Sum_probs=151.7
Q ss_pred CCEEEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEEEECCHHHHHC-----CCEEEECHHHCCEEEHHHHHHHHHHHHHH
Q ss_conf 745999976821478999-999999973899839999717899947-----88065044453110136746645999999
Q gi|254780767|r 3 SLKIAVIAGEISGDLLAG-DLIKSLKEMVSYPINLVGVGGPSLQKE-----GLVSLFDFSELSVIGIMQVVRHLPQFIFR 76 (383)
Q Consensus 3 ~mki~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~giGG~~m~~~-----G~~~~~~~~~l~v~G~~evl~~~~~~~~~ 76 (383)
+-||+|+---.=||+.-+ -++++||+++| +.++.-+..+...+. .++.++.+.. .-.|..+-+++
T Consensus 5 ~kkILIir~~~iGD~il~tP~i~~Lk~~~P-~a~I~~l~~~~~~~ll~~~P~id~i~~~~~-k~~~~~~~~~~------- 75 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYP-DAKIDVLLYQDTIPILSENPEINALYGIKN-KKAGASEKIKN------- 75 (352)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHCC-CCEEEEEECCCHHHHHHCCCCCCEEEEECC-CCCCHHHHHHH-------
T ss_conf 977999758860499999999999999889-988999978047999833999627988667-55445677999-------
Q ss_pred HHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCC-CCHHH--
Q ss_conf 999986100128886898511776579999866301346311110022110036635579999986401567-74223--
Q gi|254780767|r 77 INQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILP-FEKEV-- 153 (383)
Q Consensus 77 ~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifp-FE~~~-- 153 (383)
+.++.+.+++++.|++|-.....-.-.+++.+ +.+.... |-|+...-..+...++++..... .+.+.
T Consensus 76 ~~~l~~~Lr~~~yD~vi~l~~~~~~~~l~~~~-----~~~~~ig-----~~~~~~~~~~~~~~~~~~~~~~~~h~v~~~l 145 (352)
T PRK10422 76 FFSLIKVLRANKYDLIVNLTDQWMVALLVRLL-----NARVKIS-----QDYHHRQSAFWRKSFTHLVPLQGGHVVESNL 145 (352)
T ss_pred HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH-----CCCEEEC-----CCCCCCHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 99999998554887788667664999999983-----8985865-----6665210145565531468875415999999
Q ss_pred --HHCCCCCCEEECCCCCCCCCCCCCCHHHHHHH-CCCCCCCCEEEEEECCCCCCHHHHCCC--HHHHHHHHHHCCCCCE
Q ss_conf --20025531476388211221001355888976-187655650599853874301230511--1899987640273512
Q gi|254780767|r 154 --MQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQ-RNTPSQWKKILLLPGSRAQEIYKILPF--FESAVASLVKRNPFFR 228 (383)
Q Consensus 154 --f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~-~~~~~~~~~I~llPGSR~~EI~~~lP~--~l~~~~~l~~~~~~~~ 228 (383)
.+.. |++.. .-.+..... ..+.....+. .......+.|++-||++.. .+.+|. |.+.++.|.++ +++
T Consensus 146 ~ll~~l-~~~~~-~~~~~l~~~--~~~~~~~~~~l~~~~~~~~~ivi~pga~~~--~K~Wp~e~~a~l~~~L~~~--g~~ 217 (352)
T PRK10422 146 SVLTPL-GLSSL-VKETTMSYR--PESWKRMRRQLDHLGVTQNYVVIQPTARQI--FKCWDNDKFSAVIDALQAR--GYE 217 (352)
T ss_pred HHHHHC-CCCCC-CCCCCCCCC--HHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCCCCHHHHHHHHHHHHHC--CCE
T ss_conf 998646-99866-755566788--789999998767448889879996789985--6779999999999999847--991
Q ss_pred EEECCCCCHHHH--HHHHHHHCCCCCEEEEEC-----CCCHHHHHHHHHHHCC-CHHHHHHHHHHCCCEEEECCCC----
Q ss_conf 620166336889--999996048885055205-----5203578876355233-1156688876275302540577----
Q gi|254780767|r 229 FSLVTVSSQENL--VRCIVSKWDISPEIIIDK-----EQKKQVFMTCNAAMAA-SGTVILELALCGIPVVSIYKSE---- 296 (383)
Q Consensus 229 ~~i~~~~~~~~~--~~~~~~~~~~~~~i~~~~-----~~~~~~l~~sd~ai~~-SGTaTLE~al~g~P~IV~Yk~~---- 296 (383)
+++...++.++. .+......... .+.... .+.-.+++.|++.|+. ||...| +|++|+|+|.+|-.+
T Consensus 218 vvl~ggp~~~e~~~~~~i~~~~~~~-~v~~l~G~tsL~el~ali~~a~l~I~nDSGpmHl-AaAlg~P~ValFGpT~p~~ 295 (352)
T PRK10422 218 VVLTSGPAKDDLACVNEIAQGCQTP-PVTALAGKTTFPELGALIDHAQLFIGVDSAPAHI-AAAVNTPLICLFGATDHIF 295 (352)
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCC-CCEECCCCCCHHHHHHHHHHCCEEEECCCHHHHH-HHHCCCCEEEEECCCCCCC
T ss_conf 9997289889999999999746798-7042357888999999998178756059818999-9982999899989999200
Q ss_pred --CCEEEEEECCCCCCEEEEHHHCCCC--CCCHHHCCCCCHHHHHHHHHHHHCCH
Q ss_conf --4100001024676102302440784--26124205489899999999984498
Q gi|254780767|r 297 --WIVNFFIFYIKTWTCALPNLIVDYP--LVPEYFNSMIRSEALVRWIERLSQDT 347 (383)
Q Consensus 297 --~lt~~i~~lik~~~i~LpNii~~~~--ivPEliQ~~~~~~~i~~~~~~ll~d~ 347 (383)
|++.....+....+-..| .... =-++.+ ...+++.+.+++.++|..+
T Consensus 296 ~~P~~~~~~~~~~~~~~~~~---~~~~~~~~~~cl-~~I~~~~V~~a~~~lL~~s 346 (352)
T PRK10422 296 WRPWSDNMIQFWAGDYQPMP---TRDELDRNEKYL-SVIPAADVIAAVDKLLPSS 346 (352)
T ss_pred CCCCCCCEEEEECCCCCCCC---CCCCCCCCHHHH-CCCCHHHHHHHHHHHHHCC
T ss_conf 28999986888579877778---765668760545-3399999999999986357
No 61
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.87 E-value=8e-07 Score=64.99 Aligned_cols=319 Identities=16% Similarity=0.184 Sum_probs=166.3
Q ss_pred CHHH-HHHHHHHHHHHHCCCCEEEEEECCH----HHHH---CCCEE--EECHHHCCEE--EHHHHHHHHH----H--HHH
Q ss_conf 1478-9999999999738998399997178----9994---78806--5044453110--1367466459----9--999
Q gi|254780767|r 14 SGDL-LAGDLIKSLKEMVSYPINLVGVGGP----SLQK---EGLVS--LFDFSELSVI--GIMQVVRHLP----Q--FIF 75 (383)
Q Consensus 14 SGD~-~~a~li~~Lk~~~~~~~~~~giGG~----~m~~---~G~~~--~~~~~~l~v~--G~~evl~~~~----~--~~~ 75 (383)
+|+. ..-++++.|.++ .++.+..+..+ ...+ .-++. +++....... .+...+...| . -..
T Consensus 14 ~G~~ir~~~llk~L~~~--h~V~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~p~~~~~~~s~~ 91 (397)
T TIGR03087 14 KGDKIRSFHLLRHLAAR--HRVHLGTFVDDPEDWQYAAALRPLCEEVCVVPLDPRVARLRSLLGLLTGEPLSLPYYRSRR 91 (397)
T ss_pred CCHHHHHHHHHHHHHHC--CCEEEEEECCCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHCCCCCCCCHHHCCHH
T ss_conf 42889999999999828--9389998269866767889998644437999678417777999875248987215534999
Q ss_pred HHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEE-E--E-------------CCCCCCC-CCC-CH----
Q ss_conf 99999861001288868985117765799998663013463111-1--0-------------0221100-366-35----
Q gi|254780767|r 76 RINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIIN-Y--V-------------CPSVWAW-REG-RA---- 133 (383)
Q Consensus 76 ~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~-y--v-------------~PqvWAW-r~~-R~---- 133 (383)
....+.+.+.++++|++++ ++..+|.++.....++|.+. + + .|.-|.. ++. |.
T Consensus 92 ~~~~i~~~~~~~~~D~i~~-----~~~~~a~yl~~~~~~~p~ild~hdv~s~~~~~~a~~~~~~~~~~~~~e~~~l~~~E 166 (397)
T TIGR03087 92 LARWVNALLAAEPVDAIVV-----FSSAMAQYVTPHVRGVPRIVDFVDVDSDKWLQYARTKRWPLRWIYRREGRLLLAYE 166 (397)
T ss_pred HHHHHHHHHHCCCCCEEEE-----ECHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999960699868999-----16576775344523799899985343489999987345467789999999999999
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHCCC---CCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECC--CCCCHHH
Q ss_conf 5799999864015677422320025---5314763882112210013558889761876556505998538--7430123
Q gi|254780767|r 134 RKMCAYINQVISILPFEKEVMQRLG---GPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGS--RAQEIYK 208 (383)
Q Consensus 134 k~~~~~~d~~~~ifpFE~~~f~k~~---~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGS--R~~EI~~ 208 (383)
+++.+.+|.++++-+.|.+++++.. +.++..+.|-+ |......... .......+.+. .+|-|| ...-+.-
T Consensus 167 ~~~~~~~d~~~~vS~~d~~~~~~~~~~~~~~i~vipnGv-d~~~f~p~~~---~~~~~~~~~~~-i~f~G~~~~~pN~da 241 (397)
T TIGR03087 167 RAIAARFDAATFVSRAEAELFRRLAPEAAGRITAFPNGV-DADFFSPDRD---YPNPYPPGKRV-LVFTGAMDYWPNIDA 241 (397)
T ss_pred HHHHHHCCEEEEECHHHHHHHHHHCCCCCCEEEECCCCC-CCCCCCCCCC---CCCCCCCCCCE-EEEEEECCCCCCHHH
T ss_conf 999996699999779999999874777677277657875-5123687644---45766788987-999971787230999
Q ss_pred HCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCC----CHH--HHHHH
Q ss_conf 051118999876402735126201663368899999960488850552055203578876355233----115--66888
Q gi|254780767|r 209 ILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAA----SGT--VILEL 282 (383)
Q Consensus 209 ~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd~ai~~----SGT--aTLE~ 282 (383)
..-..-++...+.+++|+.+|.+...... +.++.. .+.. +..+.-.-.+....++.|+++++. +|+ -.||+
T Consensus 242 ~~~f~~~v~p~l~~~~p~~~~~ivG~~p~-~~~~~l-~~~~-~V~~~G~V~d~~~~~~~a~v~v~Pl~~g~G~~~KilEa 318 (397)
T TIGR03087 242 VVWFAERVFPAVRARRPAAEFYIVGAKPS-PAVRAL-AALP-GVTVTGSVADVRPYLAHAAVAVAPLRIARGIQNKVLEA 318 (397)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCC-HHHHHH-CCCC-CEEEEEECCCHHHHHHCCCEEEEECCCCCCCCHHHHHH
T ss_conf 99999999999998789987999908962-999985-1799-97997654986999961989999465445753579999
Q ss_pred HHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH-HH
Q ss_conf 76275302540577410000102467610230244078426124205489899999999984498999999999999-99
Q gi|254780767|r 283 ALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFEN-LW 361 (383)
Q Consensus 283 al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~-~~ 361 (383)
+.+|+|.|. |+ .-. -|+ ....|+.+.+. -|++..++++.++++|++.++++-++.++ +.
T Consensus 319 ma~g~PvVs---t~----~g~-------egl-~~~~g~~~lia-----~~~~~fa~~i~~Ll~d~~~~~~l~~~~r~~v~ 378 (397)
T TIGR03087 319 MAMAKPVVA---SP----EAA-------EGI-DALPGAELLVA-----ADPADFAAAILALLANPAEREELGQAARRRVL 378 (397)
T ss_pred HHCCCCEEE---CC----CCC-------CCC-CCCCCCEEEEC-----CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 976998997---77----430-------244-36789705957-----99999999999998199999999999999999
Q ss_pred HHHCCC
Q ss_conf 983899
Q gi|254780767|r 362 DRMNTK 367 (383)
Q Consensus 362 ~~Lg~~ 367 (383)
++...+
T Consensus 379 ~~ysW~ 384 (397)
T TIGR03087 379 QHYHWP 384 (397)
T ss_pred HHCCHH
T ss_conf 829999
No 62
>pfam02350 Epimerase_2 UDP-N-acetylglucosamine 2-epimerase. This family consists of UDP-N-acetylglucosamine 2-epimerases EC:5.1.3.14 this enzyme catalyses the production of UDP-ManNAc from UDP-GlcNAc. Note that some of the enzymes is this family are bifunctional, in this instance Pfam matches only the N-terminal half of the protein suggesting that the additional C-terminal part (when compared to mono-functional members of this family) is responsible for the UPD-N-acetylmannosamine kinase activity of these enzymes. This hypothesis is further supported by the assumption that the C-terminal part of rat bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase is the kinase domain.
Probab=98.84 E-value=1.5e-07 Score=69.76 Aligned_cols=276 Identities=15% Similarity=0.131 Sum_probs=149.5
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCC-CCCCCCCCH-HHHHHHHHHHCCC-CCCC
Q ss_conf 999999986100128886898511776579999866301346311110022-110036635-5799999864015-6774
Q gi|254780767|r 74 IFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPS-VWAWREGRA-RKMCAYINQVISI-LPFE 150 (383)
Q Consensus 74 ~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~Pq-vWAWr~~R~-k~~~~~~d~~~~i-fpFE 150 (383)
-.....+-+.+.+.+||+|+.. .|=+=-+|-.+-....+||++|.=+=- =+=|..+=. ...+..+|++..+ |.--
T Consensus 53 ~~~i~~~~~~l~~~~PD~vlv~--GDr~e~la~aiaa~~~~ipi~HiegG~RS~d~t~g~~de~~R~~isklS~~hf~~t 130 (346)
T pfam02350 53 GRILIGLEDVLEEEKPDLVLVL--GDTNETLAGALAAFYLRIPVAHVEAGLRSFDLTEGMPEEINRHLIDKLSDLHFAPT 130 (346)
T ss_pred HHHHHHHHHHHHHHCCCEEEEE--CCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHCCCCCCCCEEECCC
T ss_conf 9999999999998299999996--89715889999999819848995268744556799930543114665413772464
Q ss_pred HHHHHCC--CC---CCEEECCCCCCCCCCCCCCH---HHHHHHCCCCCCCCEEEEEECCCCCCH-HHHCCCHHHHHHHHH
Q ss_conf 2232002--55---31476388211221001355---888976187655650599853874301-230511189998764
Q gi|254780767|r 151 KEVMQRL--GG---PPTTFVGHPLSSSPSILEVY---SQRNKQRNTPSQWKKILLLPGSRAQEI-YKILPFFESAVASLV 221 (383)
Q Consensus 151 ~~~f~k~--~~---~~~~fVGHPl~d~~~~~~~~---~~~~~~~~~~~~~~~I~llPGSR~~EI-~~~lP~~l~~~~~l~ 221 (383)
+...++. .| -++..||+|..|.+....+. ...........+++.+++.==.+..+- +..+--+.++++.+.
T Consensus 131 ~~~~~~L~~~G~~~~~If~vG~~~iD~i~~~~~~~~~~~~~~~~~~~~~~~~iLvt~Hr~en~~~~~~~~~i~~~l~~l~ 210 (346)
T pfam02350 131 EEARENLLQEGEPPERIFVTGNTVIDALLLSREEIEESLEISGILADLGKRYILVTFHRRENEDDPERLEQILEALKALA 210 (346)
T ss_pred HHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999819994728997971999999999873101556664034568779999677534476448999999999998
Q ss_pred HCCCCCEEEECCC--CCHHHHHHHHHHHCCCCCEEEE--ECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECC-CC
Q ss_conf 0273512620166--3368899999960488850552--05520357887635523311566888762753025405-77
Q gi|254780767|r 222 KRNPFFRFSLVTV--SSQENLVRCIVSKWDISPEIII--DKEQKKQVFMTCNAAMAASGTVILELALCGIPVVSIYK-SE 296 (383)
Q Consensus 222 ~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~Yk-~~ 296 (383)
+. +++.++++.. +.....+...+..++ +..++- ...+...+++.|+++++=||..-.|++.+|+|+|++=. +.
T Consensus 211 ~~-~~~~~i~~~~n~d~~~~~i~~~l~~~~-ni~~~~~l~~~~fl~ll~~s~~vigdSs~~~~Ea~~l~~P~iniR~~ge 288 (346)
T pfam02350 211 ER-PDVPVVFPVHNNPRTRKRINELLEELP-NIRLIEPLGYLDFLSLLKNADLVITDSGGIQEEAPSLGKPVLNLRDTTE 288 (346)
T ss_pred HC-CCCCEEEEECCCCHHHHHHHHHHHCCC-CEEEECCCCHHHHHHHHHHCCEEEECCCCHHHHHHHHCCCEEEECCCCC
T ss_conf 35-686099983799207789999983479-8799656899999999985188983686216666650896898278888
Q ss_pred CCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 41000010246761023024407842612420548989999999998449899999999999999983899998999999
Q gi|254780767|r 297 WIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAE 376 (383)
Q Consensus 297 ~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~ 376 (383)
|-... ..+..++ -..+++.|.+++.+.++++..++.+. ....-.|. |.++++.++
T Consensus 289 Rqegr---------------~~g~nvl-----v~~~~~~I~~ai~~~l~~~~~~~~~~----~~~npyGd-G~as~rI~~ 343 (346)
T pfam02350 289 RPEGR---------------EAGTNVL-----VGTDKEAILAAIEKLLDDEEEYEKMS----NAVNPYGD-GNASERIVD 343 (346)
T ss_pred CHHHH---------------HHCEEEE-----ECCCHHHHHHHHHHHHHCHHHHHHHC----CCCCCCCC-CHHHHHHHH
T ss_conf 87569---------------5384699-----78999999999999971967776412----47898989-869999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780767|r 377 IV 378 (383)
Q Consensus 377 ~I 378 (383)
+|
T Consensus 344 il 345 (346)
T pfam02350 344 IL 345 (346)
T ss_pred HH
T ss_conf 96
No 63
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.82 E-value=2.1e-07 Score=68.76 Aligned_cols=284 Identities=18% Similarity=0.241 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHCCCCEEEE-EECCHH-HHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 9999999997389983999-971789-99478806504445311013674664599999999998610012888689851
Q gi|254780767|r 19 AGDLIKSLKEMVSYPINLV-GVGGPS-LQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVD 96 (383)
Q Consensus 19 ~a~li~~Lk~~~~~~~~~~-giGG~~-m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD 96 (383)
|-+++.+|.+..+ +..++ ....+. ........-.....+....+ ..+++..+...+....+.....++|++|. +
T Consensus 15 ~ERVv~~la~~~~-~~~i~T~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~l~~~a~~~~~l~~yDiiI~-s 90 (351)
T cd03804 15 GEKVVEALARLFP-DADIFTLVDDPDKLPRLLRLKKIRTSFIQKLPF--ARRRYRKYLPLMPLAIEQFDLSGYDLVIS-S 90 (351)
T ss_pred HHHHHHHHHHHCC-CCCEEEEECCCCCCCHHHCCCCCEEECHHCCCH--HHHHHHHHHHHHHHHHHHHCCCCCCEEEE-C
T ss_conf 9999999997689-998999956787585655078524640102503--45368899989999999825468998998-7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEE-CCCCCCCCCC-----------CH--HHH-----------HHHHHHHCCCCCCCH
Q ss_conf 1776579999866301346311110-0221100366-----------35--579-----------999986401567742
Q gi|254780767|r 97 NPDFTHRVAKRVRKKMPNLPIINYV-CPSVWAWREG-----------RA--RKM-----------CAYINQVISILPFEK 151 (383)
Q Consensus 97 ~pgFnl~lak~lkk~~~~ipvi~yv-~PqvWAWr~~-----------R~--k~~-----------~~~~d~~~~ifpFE~ 151 (383)
...|.+.+... .+.|++.|+ .|.-|+|... |. +.+ .+.+|.+++.=.+-.
T Consensus 91 ~~~~~~~~~~~-----~~~~~i~Y~H~P~R~~~d~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~d~iianS~~t~ 165 (351)
T cd03804 91 SHAVAKGVITR-----PDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLHYLRIWDRRSAARVDYFIANSRFVA 165 (351)
T ss_pred CCHHHHHHHCC-----CCCCEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHH
T ss_conf 84143655027-----8985899960551665422688876533577889999999999999988743889998798999
Q ss_pred HHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 23200255314763882112210013558889761876556505998538743012305111899987640273512620
Q gi|254780767|r 152 EVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSL 231 (383)
Q Consensus 152 ~~f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i 231 (383)
+..++.-+.+++-|=+| .|.-.. .. ...... ..|..| |-.+ .++...++++...+. .+.++
T Consensus 166 ~~i~~~~~~~~~Viypp-vd~~~~-~~---------~~~~~~-~~l~vg-Rl~~-~K~~~~~i~a~~~~~-----~~L~i 226 (351)
T cd03804 166 RRIKKYYGRDATVIYPP-VDTDRF-TP---------AEEKED-YYLSVG-RLVP-YKRIDLAIEAFNKLG-----KRLVV 226 (351)
T ss_pred HHHHHHHCCCCCEECCC-CCCCCC-CC---------CCCCCC-CEEEEE-CCCH-HCCCHHHHHHHHHCC-----CCEEE
T ss_conf 99999858997355829-835435-75---------766677-248855-1504-218089999998479-----97899
Q ss_pred CCCCCHHHHHHHHHHHCCCCCEEEE----ECCCCHHHHHHHHHHHCCC----HHHHHHHHHHCCCEEEECCCCCCEEEEE
Q ss_conf 1663368899999960488850552----0552035788763552331----1566888762753025405774100001
Q gi|254780767|r 232 VTVSSQENLVRCIVSKWDISPEIII----DKEQKKQVFMTCNAAMAAS----GTVILELALCGIPVVSIYKSEWIVNFFI 303 (383)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~~~~l~~sd~ai~~S----GTaTLE~al~g~P~IV~Yk~~~lt~~i~ 303 (383)
.......+.++... . .+|.+ ..++..++++.|++.+.+| |.+.+|++.+|+|+|. +..+.....+.
T Consensus 227 ~G~g~~~~~l~~~~---~--~~V~f~g~~~~~~~~~~~~~a~~~v~ps~E~FGi~~vEAma~G~PvIa-~~~gG~~e~v~ 300 (351)
T cd03804 227 IGDGPELDRLRAKA---G--PNVTFLGRVSDEELRDLYARARAFLFPAEEDFGIVPVEAMASGTPVIA-YGKGGALETVI 300 (351)
T ss_pred EECCHHHHHHHHHC---C--CCEEEEECCCHHHHHHHHHHCCEEEECCHHCCCCHHHHHHHCCCCEEE-ECCCCCCCEEC
T ss_conf 98473799999667---8--987998038989999999838869951642079759999976998898-28999755015
Q ss_pred ECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 02467610230244078426124205489899999999984498999999
Q gi|254780767|r 304 FYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAM 353 (383)
Q Consensus 304 ~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~ 353 (383)
. ..-|+ ++ +.-+++.+++++.++++|++.+.+.
T Consensus 301 ~----g~tG~--------l~-----~~~~~~~la~ai~~~~~~~~~~~~~ 333 (351)
T cd03804 301 D----GVTGI--------LF-----EEQTVESLAAAVERFEKNEDFDPQA 333 (351)
T ss_pred C----CCCEE--------EE-----CCCCHHHHHHHHHHHHHCCCCCHHH
T ss_conf 8----99789--------95-----9899999999999998595015999
No 64
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.81 E-value=4.9e-06 Score=59.80 Aligned_cols=320 Identities=13% Similarity=0.136 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEC----CHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 99999999997389983999971----78999478806504445311013674664599999999998610012888689
Q gi|254780767|r 18 LAGDLIKSLKEMVSYPINLVGVG----GPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLL 93 (383)
Q Consensus 18 ~~a~li~~Lk~~~~~~~~~~giG----G~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi 93 (383)
-+..|+++|++.+| ++.+.=-. |.+-.++ ..-|.-...+.-+ | ....+.+.+...+||++|
T Consensus 64 a~~pLv~~l~~~~P-~~~ilvTt~T~Tg~e~a~~---~~~~~v~h~YlP~-D----------~~~~v~rFl~~~~P~l~I 128 (419)
T COG1519 64 AALPLVRALRERFP-DLRILVTTMTPTGAERAAA---LFGDSVIHQYLPL-D----------LPIAVRRFLRKWRPKLLI 128 (419)
T ss_pred HHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHH---HCCCCEEEEECCC-C----------CHHHHHHHHHHCCCCEEE
T ss_conf 88999999997689-9878999527637999998---7698708996576-7----------668899999742898799
Q ss_pred EECHHHHHHHHHHHHHHHCCCCCCEEEEC------CCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEECCC
Q ss_conf 85117765799998663013463111100------221100366355799999864015677422320025531476388
Q gi|254780767|r 94 IVDNPDFTHRVAKRVRKKMPNLPIINYVC------PSVWAWREGRARKMCAYINQVISILPFEKEVMQRLGGPPTTFVGH 167 (383)
Q Consensus 94 ~iD~pgFnl~lak~lkk~~~~ipvi~yv~------PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~~~~fVGH 167 (383)
++.+-=- ..+--.++++ |+|++-.-+ =.=|++++.=++.+-+.+|++++=-.-..+=|.+.+.-+++-.||
T Consensus 129 i~EtElW-Pnli~e~~~~--~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~Rf~~LGa~~v~v~GN 205 (419)
T COG1519 129 IMETELW-PNLINELKRR--GIPLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILAQSEEDAQRFRSLGAKPVVVTGN 205 (419)
T ss_pred EEECCCC-HHHHHHHHHC--CCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCEEEECC
T ss_conf 9800136-7899999876--998999942302325777987789999999742333454888899999649861386333
Q ss_pred CCCCCCCCCCC---HHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEEC-CCCCHHHHHHH
Q ss_conf 21122100135---588897618765565059985387430123051118999876402735126201-66336889999
Q gi|254780767|r 168 PLSSSPSILEV---YSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLV-TVSSQENLVRC 243 (383)
Q Consensus 168 Pl~d~~~~~~~---~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~-~~~~~~~~~~~ 243 (383)
==.|....... ....+.+.+. . ..+.+.-+++..|-.- .+++.+.+.+++|+...+++ --|+.-+.+.+
T Consensus 206 lKfd~~~~~~~~~~~~~~r~~l~~--~-r~v~iaaSTH~GEeei----~l~~~~~l~~~~~~~llIlVPRHpERf~~v~~ 278 (419)
T COG1519 206 LKFDIEPPPQLAAELAALRRQLGG--H-RPVWVAASTHEGEEEI----ILDAHQALKKQFPNLLLILVPRHPERFKAVEN 278 (419)
T ss_pred EEECCCCCHHHHHHHHHHHHHCCC--C-CCEEEEECCCCCHHHH----HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH
T ss_conf 242377873248999999985088--8-8559995477863889----99999999963899569991587556799999
Q ss_pred HHHHCCC-------------CCEEEE--ECCCCHHHHHHHHHHHCC------CHHHHHHHHHHCCCEEEECCCCCCEEEE
Q ss_conf 9960488-------------850552--055203578876355233------1156688876275302540577410000
Q gi|254780767|r 244 IVSKWDI-------------SPEIII--DKEQKKQVFMTCNAAMAA------SGTVILELALCGIPVVSIYKSEWIVNFF 302 (383)
Q Consensus 244 ~~~~~~~-------------~~~i~~--~~~~~~~~l~~sd~ai~~------SGTaTLE~al~g~P~IV~Yk~~~lt~~i 302 (383)
.+++.+. +.+|.+ ..++....+..+|+|.+- -|-+-||.|.+++|.|..-.+.-.+-..
T Consensus 279 l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~Gp~~~Nf~ei~ 358 (419)
T COG1519 279 LLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIFGPYTFNFSDIA 358 (419)
T ss_pred HHHHCCCEEEEECCCCCCCCCCCEEEEECHHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHCCCCEEECCCCCCHHHHH
T ss_conf 99975981886137899988886899962868999973432799877446778988223787089788777513589999
Q ss_pred EECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 1024676102302440784261242054898999999999844989999999999999998389999899999999986
Q gi|254780767|r 303 IFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAEIVLQV 381 (383)
Q Consensus 303 ~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~~ 381 (383)
.++++..-. +|=+ +.+.+.+.+..++.|++.|+++.++..++..... | +-.+--+.+.++
T Consensus 359 ~~l~~~ga~---------------~~v~-~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~--g-al~r~l~~l~~~ 418 (419)
T COG1519 359 ERLLQAGAG---------------LQVE-DADLLAKAVELLLADEDKREAYGRAGLEFLAQNR--G-ALARTLEALKPY 418 (419)
T ss_pred HHHHHCCCE---------------EEEC-CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHC
T ss_conf 999866986---------------9977-8899999999970788999999998999999867--7-999999975511
No 65
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.79 E-value=9.9e-08 Score=70.98 Aligned_cols=148 Identities=20% Similarity=0.246 Sum_probs=113.8
Q ss_pred EECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC--CCCHHHHHHHHHHHCCC
Q ss_conf 8538743012305111899987640273512620166336889999996048885055205--52035788763552331
Q gi|254780767|r 198 LPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEIIIDK--EQKKQVFMTCNAAMAAS 275 (383)
Q Consensus 198 lPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~l~~sd~ai~~S 275 (383)
+-=+|-++- +++..++++..++.++.|+.++.|......+..++....+.++...|.+.. .+..+.++.|++.+.+|
T Consensus 208 i~vgRL~~e-K~~d~LI~A~~~v~~~~P~~~L~I~G~G~~~~~L~~~i~~l~l~~~V~f~G~~~~~~~~y~~a~~~v~~S 286 (372)
T cd04949 208 ITVARLAPE-KQLDQLIKAFAKVVKQVPDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSLLTS 286 (372)
T ss_pred EEEECCCCC-CCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCEEEECC
T ss_conf 999677740-2859999999999987899299999734778999999998299987998899889899997579999802
Q ss_pred -----HHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCC---CCCHHHCCCCCHHHHHHHHHHHHCCH
Q ss_conf -----1566888762753025405774100001024676102302440784---26124205489899999999984498
Q gi|254780767|r 276 -----GTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYP---LVPEYFNSMIRSEALVRWIERLSQDT 347 (383)
Q Consensus 276 -----GTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~---ivPEliQ~~~~~~~i~~~~~~ll~d~ 347 (383)
|.+.+|++.+|+| ||+|..+. |.+.+|-+.+ ++| .-+++.+++.+..+++|+
T Consensus 287 ~~EGfgl~llEAma~GlP-vIa~d~~y--------------G~~eiI~~g~nG~Lv~-----~~d~~~la~~i~~ll~~~ 346 (372)
T cd04949 287 QSEGFGLSLMEALSHGLP-VISYDVNY--------------GPSEIIEDGENGYLVP-----KGDIEALAEAIIELLNDP 346 (372)
T ss_pred CCCCCCCHHHHHHHCCCC-EEEECCCC--------------CCHHHHCCCCCEEEEC-----CCCHHHHHHHHHHHHCCH
T ss_conf 003676589999985999-99805999--------------9688845898479968-----999999999999998699
Q ss_pred HHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999998389
Q gi|254780767|r 348 LQRRAMLHGFENLWDRMNT 366 (383)
Q Consensus 348 ~~r~~~~~~~~~~~~~Lg~ 366 (383)
+.+++|-++..+..++...
T Consensus 347 ~~~~~~s~~a~~~a~~fs~ 365 (372)
T cd04949 347 KLLQKFSEAAYENAERYSE 365 (372)
T ss_pred HHHHHHHHHHHHHHHHCCH
T ss_conf 9999999999999995598
No 66
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=98.79 E-value=9e-07 Score=64.66 Aligned_cols=314 Identities=16% Similarity=0.121 Sum_probs=159.0
Q ss_pred CEEEEEECCCCHHHH-HHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf 459999768214789-9999999997389983999971789994788065044453110136746645999999999986
Q gi|254780767|r 4 LKIAVIAGEISGDLL-AGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVE 82 (383)
Q Consensus 4 mki~i~aGE~SGD~~-~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~ 82 (383)
|||+|+---.=||+. +.-++++||+.+| +.++.-++.+..+..= +-.-++++ ++-+ ...+-..-.....++.+
T Consensus 1 MkILvi~~~~iGDvvlttP~l~aLr~~~P-~a~I~~l~~~~~~~l~-~~~P~id~--vi~~--~~~~~~~~~~~~~~l~~ 74 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYP-QAIIDVMAPAWCRPLL-SRMPEVNE--AIPM--PLGHGALEIGERRRLGH 74 (348)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHCC-CCEEEEEECHHHHHHH-HHCCCCCE--EEEC--CCCCCCHHHHHHHHHHH
T ss_conf 96999888764699999999999998789-9889999786269999-50998448--9974--67554000679999999
Q ss_pred HCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCC-EEEECCCCC-CCCCCCH-------HHHHHHHHHHCCCCCCCHHH
Q ss_conf 10012888689851177657999986630134631-111002211-0036635-------57999998640156774223
Q gi|254780767|r 83 LIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPI-INYVCPSVW-AWREGRA-------RKMCAYINQVISILPFEKEV 153 (383)
Q Consensus 83 ~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipv-i~yv~PqvW-AWr~~R~-------k~~~~~~d~~~~ifpFE~~~ 153 (383)
.+++.+.|.++.... ++|=+-... ..|+|. +-|-...-| .....|. ..+.++.... ++...
T Consensus 75 ~Lr~~~yD~~i~l~~---s~rsal~~~--lag~~~riG~~~~~r~~l~~~~~~~~~~~~~~~v~~~~~l~-----~~~~~ 144 (348)
T PRK10916 75 SLREKRYDRAYVLPN---SFKSALVPF--FAGIPHRTGWRGEMRYGLLNDLRVLDKEAWPLMVERYVALA-----YDKGV 144 (348)
T ss_pred HHHHHCCCEEEECCC---CHHHHHHHH--HCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH-----HHHCC
T ss_conf 998738998999998---679999998--63777212443023444316652367433407899999877-----54022
Q ss_pred HHCCCCCCEEECCCCCCC-CC-CCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCC--CHHHHHHHHHHCCCCCEE
Q ss_conf 200255314763882112-21-00135588897618765565059985387430123051--118999876402735126
Q gi|254780767|r 154 MQRLGGPPTTFVGHPLSS-SP-SILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILP--FFESAVASLVKRNPFFRF 229 (383)
Q Consensus 154 f~k~~~~~~~fVGHPl~d-~~-~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP--~~l~~~~~l~~~~~~~~~ 229 (383)
.....+ ...|+.. .. ..........+..++..++++|++-|||+..+-| .+| -|.+.++.|.++ ++++
T Consensus 145 ~~~~~~-----~p~p~~~p~l~~~~~~~~~~~~~~~~~~~~~~i~i~pGa~~~~~K-rWp~e~fa~la~~L~~~--g~~v 216 (348)
T PRK10916 145 MRTAQD-----LPQPLLWPQLQVSEGEKSYTCNQFSLSSERPIIGFCPGAEFGPAK-RWPHYHYAELAKQLIDE--GYQV 216 (348)
T ss_pred CCCHHC-----CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCC-CCCHHHHHHHHHHHHHC--CCEE
T ss_conf 111000-----575445556678989999999864877799779981687666567-79889999999999968--9979
Q ss_pred EECCCCCHHHHHHHHHHHCCC--CCEEE-----EECCCCHHHHHHHHHHHCC-CHHHHHHHHHHCCCEEEECCCCCCEEE
Q ss_conf 201663368899999960488--85055-----2055203578876355233-115668887627530254057741000
Q gi|254780767|r 230 SLVTVSSQENLVRCIVSKWDI--SPEII-----IDKEQKKQVFMTCNAAMAA-SGTVILELALCGIPVVSIYKSEWIVNF 301 (383)
Q Consensus 230 ~i~~~~~~~~~~~~~~~~~~~--~~~i~-----~~~~~~~~~l~~sd~ai~~-SGTaTLE~al~g~P~IV~Yk~~~lt~~ 301 (383)
++...++..+..+.+...... ...+. +.-.+.-.+++.|++.|+. ||...| ++.+|+|+|.+|-.+--.++
T Consensus 217 vl~G~~~e~~~~~~i~~~l~~~~~~~~~nl~GktsL~el~ali~~a~l~I~nDSGpmHl-AaA~g~P~valFGpT~P~~~ 295 (348)
T PRK10916 217 VLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVILIAACKAIVTNDSGLMHV-AAALNRPLVALYGPSSPDFT 295 (348)
T ss_pred EEEECHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHCCEEEECCCHHHHH-HHHCCCCEEEEECCCCCCCC
T ss_conf 99817236999999998510331565141678899999999998559878448828999-99809988999899993314
Q ss_pred --E---EECCCCCCEEEEHHHCCCCCCCH----HHCCCCCHHHHHHHHHHHHCC
Q ss_conf --0---10246761023024407842612----420548989999999998449
Q gi|254780767|r 302 --F---IFYIKTWTCALPNLIVDYPLVPE----YFNSMIRSEALVRWIERLSQD 346 (383)
Q Consensus 302 --i---~~lik~~~i~LpNii~~~~ivPE----liQ~~~~~~~i~~~~~~ll~d 346 (383)
. .+.+...-..-| ..+.-.|+ .+ .+.+|+.+.+++.++|..
T Consensus 296 ~P~~~~~~vi~~~~~~~~---~~~~~c~~g~~~Cm-~~i~p~~V~~~~~~lL~~ 345 (348)
T PRK10916 296 PPLSHKARVIRLITGYHK---VRKGDAAQGYHQSL-IDITPQRVLEELNALLLQ 345 (348)
T ss_pred CCCCCCEEEEEECCCCCC---CCCCCCCCCCCCHH-HHCCHHHHHHHHHHHHHH
T ss_conf 899998489982687687---67889999854645-409999999999999841
No 67
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=98.78 E-value=5.4e-06 Score=59.51 Aligned_cols=225 Identities=13% Similarity=0.176 Sum_probs=135.2
Q ss_pred HHHHHHHHCCCCCCEE-EECCCCCCC------CCCCHHHHHHHHHHHCCCCCCCHHHHHCC-----CCCCEEECCCCCCC
Q ss_conf 9998663013463111-100221100------36635579999986401567742232002-----55314763882112
Q gi|254780767|r 104 VAKRVRKKMPNLPIIN-YVCPSVWAW------REGRARKMCAYINQVISILPFEKEVMQRL-----GGPPTTFVGHPLSS 171 (383)
Q Consensus 104 lak~lkk~~~~ipvi~-yv~PqvWAW------r~~R~k~~~~~~d~~~~ifpFE~~~f~k~-----~~~~~~fVGHPl~d 171 (383)
.+..+++...++|++. .=.+-+|.= .+-| +.+-+..|+++++=.+-.++..+. ..+.+.+.|=+...
T Consensus 142 ~~all~~~~~~~~~~~taHg~Diy~~~~~~~~~~~~-~~~~~~~d~v~~vS~~~~~~l~~~~~~~~~ki~v~~~Gv~~~~ 220 (407)
T cd04946 142 ALALLKKEYLRKRVISRAHGYDLYEDRYPSGYIPLR-RYLLSSLDAVFPCSEQGRNYLQKRYPAYKEKIKVSYLGVSDPG 220 (407)
T ss_pred HHHHHHHHCCCCCEEEEEECHHHCCCCCCCCCHHHH-HHHHHHCCEEEEECHHHHHHHHHHCCCCCCCEEEEECCCCCCC
T ss_conf 999999863898299973030303330235304789-9998526879997778899998736997575899968967433
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEE--ECCCCCHHHHHHHHHHHCC
Q ss_conf 21001355888976187655650599853874301230511189998764027351262--0166336889999996048
Q gi|254780767|r 172 SPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFS--LVTVSSQENLVRCIVSKWD 249 (383)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~ 249 (383)
.. . .+.....+-++-=+|-.|.|. ++.+++++..+.+++|+.++. +......++.++...++.+
T Consensus 221 ~~---~----------~~~~~~~~~i~svgrlv~~Kg-~~~li~A~~~l~~~~~~~~~~~~iiG~G~~~~~l~~~~~~l~ 286 (407)
T cd04946 221 II---S----------KPSKDDTLRIVSCSYLVPVKR-VDLIIKALAALAKARPSIKIKWTHIGGGPLEDTLKELAESKP 286 (407)
T ss_pred CC---C----------CCCCCCCEEEEEEECCCHHCC-HHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHCC
T ss_conf 46---7----------888789659999617730038-899999999998658993899999826812899999999779
Q ss_pred CCCEEEEECCC----CHHHHHH--HHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHC
Q ss_conf 88505520552----0357887--63552331-----1566888762753025405774100001024676102302440
Q gi|254780767|r 250 ISPEIIIDKEQ----KKQVFMT--CNAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIV 318 (383)
Q Consensus 250 ~~~~i~~~~~~----~~~~l~~--sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~ 318 (383)
+...|...... -.+.+.. +|+-+..| +++.+|++.+|+|.|.. ..+ |.|-++-
T Consensus 287 l~~~v~f~G~~~~~~v~~~~~~~~~d~~~~~s~~eg~p~~~~Eama~g~pvi~t-~~~---------------g~~e~v~ 350 (407)
T cd04946 287 ENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIAT-NVG---------------GTPEIVD 350 (407)
T ss_pred CCCEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEEC-CCC---------------CCHHHEE
T ss_conf 988799927899699999998569619995663346417999999749999984-799---------------9841230
Q ss_pred CCC---CCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 784---261242054898999999999844989999999999999998
Q gi|254780767|r 319 DYP---LVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDR 363 (383)
Q Consensus 319 ~~~---ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~ 363 (383)
+.+ ++| .+.+++.+++++.++++|++.+++|..+.++..++
T Consensus 351 ~~~~g~l~~----~~~~~~~la~~i~~l~~~~~~~~~~~~~ar~~v~~ 394 (407)
T cd04946 351 NGGNGLLLS----KDPTPNELVSSLSKFIDNEEEYQTMREKAREKWEE 394 (407)
T ss_pred CCCCEEEEC----CCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_conf 698279968----99999999999999980999999999999999998
No 68
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.77 E-value=5.3e-06 Score=59.56 Aligned_cols=345 Identities=17% Similarity=0.138 Sum_probs=163.2
Q ss_pred CCEEEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEEEECC--HHHHHCC--CEEEEC--HHHCCEEEHH---HHHH-HHH
Q ss_conf 745999976821478999-999999973899839999717--8999478--806504--4453110136---7466-459
Q gi|254780767|r 3 SLKIAVIAGEISGDLLAG-DLIKSLKEMVSYPINLVGVGG--PSLQKEG--LVSLFD--FSELSVIGIM---QVVR-HLP 71 (383)
Q Consensus 3 ~mki~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~giGG--~~m~~~G--~~~~~~--~~~l~v~G~~---evl~-~~~ 71 (383)
+|||++++.-..||+.-. .|.++|+++ +.++.|...+. +..+++| ++..-. .....--+.. ..+. ++.
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~-gheV~~~~~~~~~~~ve~ag~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRR-GHEVVFASTGKFKEFVEAAGLAFVAYPIRDSELATEDGKFAGVKSFRRLLQ 79 (406)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHC-CCEEEEEECHHHHHHHHHHCCCCEECCCCCCHHHHHCCHHHHHHHHHHHHH
T ss_conf 9579998177643226669999999976-974999737789999998364610244666532332011233454899998
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEE--ECHHHHHHHH----------HHHHH---HHCCCC--------CCEEE-ECCCCCC
Q ss_conf 99999999986100128886898--5117765799----------99866---301346--------31111-0022110
Q gi|254780767|r 72 QFIFRINQTVELIVSSKPDVLLI--VDNPDFTHRV----------AKRVR---KKMPNL--------PIINY-VCPSVWA 127 (383)
Q Consensus 72 ~~~~~~~~~~~~i~~~~Pd~vi~--iD~pgFnl~l----------ak~lk---k~~~~i--------pvi~y-v~PqvWA 127 (383)
.+++...+..+.+.+..||.++- ..+.++-.+. +.+.. +..+-+ ++-+| +.|-.=.
T Consensus 80 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (406)
T COG1819 80 QFKKLIRELLELLRELEPDLVVDDARLSLGLAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAGKLPIPLYPLPPRLVR 159 (406)
T ss_pred HHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHCCCCEEEECCHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHC
T ss_conf 87766688999998746132124100012356544388788861323234403216865310144566565555332303
Q ss_pred C----CCCCHHHHHH-----------HHHHHCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHH-HHCCCCCC
Q ss_conf 0----3663557999-----------998640156774223200255314763882112210013558889-76187655
Q gi|254780767|r 128 W----REGRARKMCA-----------YINQVISILPFEKEVMQRLGGPPTTFVGHPLSSSPSILEVYSQRN-KQRNTPSQ 191 (383)
Q Consensus 128 W----r~~R~k~~~~-----------~~d~~~~ifpFE~~~f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~-~~~~~~~~ 191 (383)
| +.++.+...+ ..+....-=.++..+++.. .... -++|.....-......... .......+
T Consensus 160 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~d 236 (406)
T COG1819 160 PLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVL--FPPG-DRLPFIGPYIGPLLGEAANELPYWIPAD 236 (406)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCEEECCCC--CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 000220355656665302456455407777426987642215644--5766-6788663656775777533466531379
Q ss_pred CCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEE-EEECCCCHHHHHHHHH
Q ss_conf 650599853874301230511189998764027351262016633688999999604888505-5205520357887635
Q gi|254780767|r 192 WKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEI-IIDKEQKKQVFMTCNA 270 (383)
Q Consensus 192 ~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~l~~sd~ 270 (383)
+++|-+--||-..- ...+-..+++...+ +.++++.... .+ .... +.+.++ +.......+++..||+
T Consensus 237 ~~~vyvslGt~~~~-~~l~~~~~~a~~~l-----~~~vi~~~~~-~~----~~~~--~~p~n~~v~~~~p~~~~l~~ad~ 303 (406)
T COG1819 237 RPIVYVSLGTVGNA-VELLAIVLEALADL-----DVRVIVSLGG-AR----DTLV--NVPDNVIVADYVPQLELLPRADA 303 (406)
T ss_pred CCEEEEECCCCCCH-HHHHHHHHHHHHCC-----CCEEEEECCC-CC----CCCC--CCCCCEEEECCCCHHHHHHCCCE
T ss_conf 96399955787537-88999999998549-----9649997367-64----2346--88877478615758988740798
Q ss_pred HHCCCHHHHH-HHHHHCCCEEEECCCCCCEEEEE-ECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHH
Q ss_conf 5233115668-88762753025405774100001-024676102302440784261242054898999999999844989
Q gi|254780767|r 271 AMAASGTVIL-ELALCGIPVVSIYKSEWIVNFFI-FYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTL 348 (383)
Q Consensus 271 ai~~SGTaTL-E~al~g~P~IV~Yk~~~lt~~i~-~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~ 348 (383)
+|+-.|-.|. |+...|+|+|++--.. =.+.-+ +.-...+ |..+=. +..|++.+..++.++|.|+.
T Consensus 304 vI~hGG~gtt~eaL~~gvP~vv~P~~~-DQ~~nA~rve~~G~--------G~~l~~----~~l~~~~l~~av~~vL~~~~ 370 (406)
T COG1819 304 VIHHGGAGTTSEALYAGVPLVVIPDGA-DQPLNAERVEELGA--------GIALPF----EELTEERLRAAVNEVLADDS 370 (406)
T ss_pred EEECCCHHHHHHHHHCCCCEEEECCCC-CHHHHHHHHHHCCC--------CEECCC----CCCCHHHHHHHHHHHHCCHH
T ss_conf 991798579999997399989827873-07879999997498--------831275----65888999999999967399
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 9999999999999983899998999999999861
Q gi|254780767|r 349 QRRAMLHGFENLWDRMNTKKPAGHMAAEIVLQVL 382 (383)
Q Consensus 349 ~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~~L 382 (383)
++++. +++.+.++...+ .+.+|+.|.++.
T Consensus 371 ~~~~~----~~~~~~~~~~~g-~~~~a~~le~~~ 399 (406)
T COG1819 371 YRRAA----ERLAEEFKEEDG-PAKAADLLEEFA 399 (406)
T ss_pred HHHHH----HHHHHHHHHCCC-HHHHHHHHHHHH
T ss_conf 99999----999999765553-799999999998
No 69
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=98.65 E-value=7.4e-06 Score=58.62 Aligned_cols=306 Identities=11% Similarity=0.117 Sum_probs=150.2
Q ss_pred CEEEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEEEECCHHHHHCC-CEEEECHHHCCEEEHHHHHHHH--HHHHHHHHH
Q ss_conf 45999976821478999-9999999738998399997178999478-8065044453110136746645--999999999
Q gi|254780767|r 4 LKIAVIAGEISGDLLAG-DLIKSLKEMVSYPINLVGVGGPSLQKEG-LVSLFDFSELSVIGIMQVVRHL--PQFIFRINQ 79 (383)
Q Consensus 4 mki~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~giGG~~m~~~G-~~~~~~~~~l~v~G~~evl~~~--~~~~~~~~~ 79 (383)
|||+|+.--.=||+.=+ -++++||+.+| +.++.-+..+...+.= .+.. ++++=.+..-+--+.. ..++.....
T Consensus 1 MrILiIr~~~lGDvilttP~l~~Lr~~~P-~a~I~~lv~~~~~~l~~~~P~--id~vi~~~~~~~~k~~~~~~~~~~~~~ 77 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIP-GIQFDWVVEEGFAQIPSWHSA--VDRVIPVAIRRWRKAWFSAPIKAERKA 77 (322)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHCC-CCEEEEEECHHHHHHHHCCCC--CCEEEECCCCHHHHCCCCHHHHHHHHH
T ss_conf 97999916756899989999999999889-988999977257887510986--258874242012212231157999999
Q ss_pred HHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCC
Q ss_conf 98610012888689851177657999986630134631111002211003663557999998640156774223200255
Q gi|254780767|r 80 TVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQRLGG 159 (383)
Q Consensus 80 ~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~ 159 (383)
..+.++.++.|++|-.....-+-.++.++.+ +.+.-+ .|+..|-....-++++-..+.+-+. ..+++..
T Consensus 78 ~~~~lr~~~yD~vidlq~~~rsa~l~~~~~~---~~r~g~-------~~~~~r~~~~~~~~~~~~~~~~~~h-~v~r~~~ 146 (322)
T PRK10964 78 FRRALQAEQYDAVIDAQGLVKSAALVTRLAH---GVKHGM-------DWQSAREPLASLFYNRKHHIAKQQH-AVERTRE 146 (322)
T ss_pred HHHHHHHCCCCEEEECCCCHHHHHHHHHHCC---CCEECC-------CCCCCCCCHHHHHCCCCCCCCCCCC-HHHHHHH
T ss_conf 9999874589799988531778999998636---861046-------6433444014543035306873103-9999999
Q ss_pred CCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCC--CHHHHHHHHHHCCCCCEEEECCC-CC
Q ss_conf 3147638821122100135588897618765565059985387430123051--11899987640273512620166-33
Q gi|254780767|r 160 PPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILP--FFESAVASLVKRNPFFRFSLVTV-SS 236 (383)
Q Consensus 160 ~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP--~~l~~~~~l~~~~~~~~~~i~~~-~~ 236 (383)
+-..-.|-|.-+..........+.... ...+.+.+.++||+.+.+ +.+| -|.+.++.+.++ +++++++.. ++
T Consensus 147 l~~~~lg~~~p~~~~~~~~~~~~~~~~-~~~~~~~vv~~~~~s~~~--K~Wp~e~f~~La~~L~~~--g~~v~l~~G~~~ 221 (322)
T PRK10964 147 LFAKSLGYSKPQTQGDYAIAQHFLTNL-PADAGPYLVFLHATTRDD--KHWPEAHWRELIGLLADS--GLRIKLPWGAPH 221 (322)
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHC-CCCCCCEEEEECCCCCCC--CCCCHHHHHHHHHHHHHC--CCEEEEECCCHH
T ss_conf 999974998987502256659987412-125698499973787412--589989999999999967--997999478989
Q ss_pred HHHHHHHHHHHCCCCCEEE--EECCCCHHHHHHHHHHHCC-CHHHHHHHHHHCCCEEEECC-CCCCEEEE--E--ECCCC
Q ss_conf 6889999996048885055--2055203578876355233-11566888762753025405-77410000--1--02467
Q gi|254780767|r 237 QENLVRCIVSKWDISPEII--IDKEQKKQVFMTCNAAMAA-SGTVILELALCGIPVVSIYK-SEWIVNFF--I--FYIKT 308 (383)
Q Consensus 237 ~~~~~~~~~~~~~~~~~i~--~~~~~~~~~l~~sd~ai~~-SGTaTLE~al~g~P~IV~Yk-~~~lt~~i--~--~lik~ 308 (383)
.+..........+ ..++. ..-.+.-.+++.|++.|+. ||... =+|.+|+|+|.+|- |+|--+-= . +-++.
T Consensus 222 e~~~~~~i~~~~~-~v~~~g~~sL~elaall~~a~l~I~nDSG~mH-lAaAlg~P~v~LFGpT~P~~~gP~g~~~~~~~~ 299 (322)
T PRK10964 222 EEARAKRLAEGFD-YVEVLPKMSLEEVARVLAGAKAVVSVDTGLSH-LTAALDRPNITLYGPTDPGLIGGYGKNQHACRS 299 (322)
T ss_pred HHHHHHHHHHCCC-CCEECCCCCHHHHHHHHHHCCEEEECCCHHHH-HHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEC
T ss_conf 9999999980699-61245899999999999709999966975999-999839998999888994030788888248968
Q ss_pred CCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 6102302440784261242054898999999999844
Q gi|254780767|r 309 WTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQ 345 (383)
Q Consensus 309 ~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~ 345 (383)
..-.+ .+.+++++.+.++++|.
T Consensus 300 ~~~~~---------------~~~~~~~v~~~~~~~~~ 321 (322)
T PRK10964 300 EGKSM---------------ANLSAETVFQKLETLIS 321 (322)
T ss_pred CCCCC---------------CCCCHHHHHHHHHHHHC
T ss_conf 99870---------------21999999999999745
No 70
>TIGR01426 MGT glycosyltransferase, MGT family; InterPro: IPR006326 These sequences belong to the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production. ; GO: 0016758 transferase activity transferring hexosyl groups, 0016999 antibiotic metabolic process.
Probab=98.62 E-value=1.3e-06 Score=63.56 Aligned_cols=328 Identities=13% Similarity=0.169 Sum_probs=183.3
Q ss_pred HHHHHH-HHHHHHHHHCCCCEEEEEECCHHHH----HCCCEEE-EC--------HHH------CCEEE-HHHHH-HHHHH
Q ss_conf 478999-9999999738998399997178999----4788065-04--------445------31101-36746-64599
Q gi|254780767|r 15 GDLLAG-DLIKSLKEMVSYPINLVGVGGPSLQ----KEGLVSL-FD--------FSE------LSVIG-IMQVV-RHLPQ 72 (383)
Q Consensus 15 GD~~~a-~li~~Lk~~~~~~~~~~giGG~~m~----~~G~~~~-~~--------~~~------l~v~G-~~evl-~~~~~ 72 (383)
|++-.+ .++++|=++ + -++....++.|+ ++|.+.+ |+ +.+ ...++ +.+++ +-|..
T Consensus 7 GHVNPtL~v~~ELV~R-G--h~VTY~~t~ef~~~v~~~GA~~~~Y~~~~~~~~~~~~~~~sa~~~~~~~~~~~~~~ll~~ 83 (429)
T TIGR01426 7 GHVNPTLGVVEELVAR-G--HRVTYATTEEFADAVAAAGAEALLYGSALEGDPDMPREEESAENMTEEELLDIIEKLLDE 83 (429)
T ss_pred CCCCCCHHHHHHHHHC-C--CEEEEECCHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 7657657899999845-9--746631788899999972985888486777654565100462103234588999999999
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECHHHHH--HHHHHHHHHHCCCCCCEE----EECC-CCCC------------------
Q ss_conf 99999999861001288868985117765--799998663013463111----1002-2110------------------
Q gi|254780767|r 73 FIFRINQTVELIVSSKPDVLLIVDNPDFT--HRVAKRVRKKMPNLPIIN----YVCP-SVWA------------------ 127 (383)
Q Consensus 73 ~~~~~~~~~~~i~~~~Pd~vi~iD~pgFn--l~lak~lkk~~~~ipvi~----yv~P-qvWA------------------ 127 (383)
-.+.+.++.+.+..-+||+|+=-=.--|+ --||+++ ++|+|. |+++ .+|.
T Consensus 84 ~~~~Lp~l~~~~~~d~pDlv~yD~a~~l~~G~llA~~l-----~~P~i~~~p~fA~~~~~~~~~~avqdPtadrGeea~~ 158 (429)
T TIGR01426 84 SLSLLPQLEEAYKGDRPDLVVYDIATPLWAGRLLARKL-----DVPVISSFPTFASNEEFEEMQRAVQDPTADRGEEALS 158 (429)
T ss_pred HHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHH-----CCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999997148998789853131568999987650-----7886898654555365145677434766555420157
Q ss_pred ------CCCCC--HH--------HHHHHHHHHCCC--------CCCC--------------HHHH----HCCCCCC-EEE
Q ss_conf ------03663--55--------799999864015--------6774--------------2232----0025531-476
Q gi|254780767|r 128 ------WREGR--AR--------KMCAYINQVISI--------LPFE--------------KEVM----QRLGGPP-TTF 164 (383)
Q Consensus 128 ------Wr~~R--~k--------~~~~~~d~~~~i--------fpFE--------------~~~f----~k~~~~~-~~f 164 (383)
|...| =+ -+.+|+.....+ =|++ .+.| +.+ +=. =+|
T Consensus 159 p~~~~~~~~~~~~~r~seqmelfgL~~y~~~~~~ll~~~~~~~~p~~~l~~~~~dlnlv~~pk~Fq~~~e~f-Dd~tf~F 237 (429)
T TIGR01426 159 PIGEDSLEEAAIAERFSEQMELFGLAEYVARLSALLEEHGITAPPVEFLAAPRRDLNLVYTPKAFQPAGETF-DDRTFKF 237 (429)
T ss_pred CCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCEEECCHHHCCCCEEE-CCCCCEE
T ss_conf 888256513778763357889999999999999999860798634388733789964476462112064111-5740133
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCC-HHHHHHHHHHCCCCCEEEECCCCCHHHHHHH
Q ss_conf 388211221001355888976187655650599853874301230511-1899987640273512620166336889999
Q gi|254780767|r 165 VGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPF-FESAVASLVKRNPFFRFSLVTVSSQENLVRC 243 (383)
Q Consensus 165 VGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~-~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~ 243 (383)
||=|+-+...... ++ -..-..++|+|.+==||=-++ .|. |.++.-+=.+..+.-+.++..+...+. .
T Consensus 238 VGP~~g~R~~~~~---nF--w~~~~~~~pV~liSLGTvFn~----~p~~fyr~f~~AF~~~~GW~vV~~~g~~vDp---~ 305 (429)
T TIGR01426 238 VGPCIGDRKEDGS---NF--WAEPEKGRPVVLISLGTVFNA----QPSKFYRTFVEAFRDLPGWHVVLSVGKGVDP---A 305 (429)
T ss_pred CCCCCCCCCCCCC---CC--CCCCCCCCCEEEEECCHHHCC----CHHHHHHHHHHHCCCCCCCEEEEEECCCCCH---H
T ss_conf 2878876777865---57--788888884699975614412----4479999999860899870799972670264---6
Q ss_pred HHHHCCCCCEEEEE-CCCCHHHHHHHHHHHCCCHHHHH-HHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCC
Q ss_conf 99604888505520-55203578876355233115668-88762753025405774100001024676102302440784
Q gi|254780767|r 244 IVSKWDISPEIIID-KEQKKQVFMTCNAAMAASGTVIL-ELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYP 321 (383)
Q Consensus 244 ~~~~~~~~~~i~~~-~~~~~~~l~~sd~ai~~SGTaTL-E~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ 321 (383)
.+... +.++.+- .=...++|.+||+.|+=+||.|- |+...|||+|++-...=-. ..++.+ .-|=+|..
T Consensus 306 ~L~~~--P~Nv~VR~~VPq~evL~~A~lfvTHgGmnSt~EaL~~gVP~va~P~~adQ~-~~A~R~-------~ELGlg~~ 375 (429)
T TIGR01426 306 DLGEL--PKNVEVRRWVPQLEVLEKADLFVTHGGMNSTMEALAAGVPLVAVPQGADQP-MTARRI-------AELGLGRV 375 (429)
T ss_pred HHCCC--CCCEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEECCCCCCH-HHHHHH-------HHCCCEEE
T ss_conf 61679--887788546562778988888863166015899996499689851788801-376575-------13562111
Q ss_pred CCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 2612420548989999999998449899999999999999983899998999999999861
Q gi|254780767|r 322 LVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAEIVLQVL 382 (383)
Q Consensus 322 ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~~L 382 (383)
+=+ ++.|++.|-..+.+++.|+.+++ +.+++++.+.+.|++ ++||++|..+|
T Consensus 376 l~~----e~vTa~~LR~~v~~v~~D~~~~~----~~~~~r~~~~eAGG~-~rAAdeiE~~l 427 (429)
T TIGR01426 376 LPK----EEVTAEKLREAVLAVLSDDEYLE----RLKKIRAEIREAGGA-RRAADEIEGFL 427 (429)
T ss_pred CCC----CCCCHHHHHHHHHHHHCCHHHHH----HHHHHHHHHHHCCCH-HHHHHHHHHHH
T ss_conf 376----55278999999998605888999----999999999850453-38999999974
No 71
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=98.61 E-value=1.4e-06 Score=63.30 Aligned_cols=322 Identities=13% Similarity=0.098 Sum_probs=182.3
Q ss_pred CCEEEEEECCCCHHHH---HHHHHHHHHHHCCCCEEEEEECCHHHHH-----CCCEEE-ECHHHCCEEEHH---HHHHHH
Q ss_conf 7459999768214789---9999999997389983999971789994-----788065-044453110136---746645
Q gi|254780767|r 3 SLKIAVIAGEISGDLL---AGDLIKSLKEMVSYPINLVGVGGPSLQK-----EGLVSL-FDFSELSVIGIM---QVVRHL 70 (383)
Q Consensus 3 ~mki~i~aGE~SGD~~---~a~li~~Lk~~~~~~~~~~giGG~~m~~-----~G~~~~-~~~~~l~v~G~~---evl~~~ 70 (383)
-||||+-+-..+|=-| +.++.++|.+. ..++++.-|.|--+.. +|++.+ .+.=..+--|+. +-=-.+
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d-~~~~~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~~G~~~~~d~~~~l 87 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVED-YLGFDILIISGGPPAGGFPGPAGVDFVKLPSLIKGDNGEYGLVDLDGDL 87 (400)
T ss_pred CCEEEEEEHHHCCCHHHHHHHHHHHHHHHC-CCCCEEEEEECCCCCCCCCCCCCCCEEECCCEEECCCCCEEEEECCCCH
T ss_conf 625789860101304899999999998525-5684399995897568897745675685484574588733444568889
Q ss_pred HHHHHHHHH-HHHHCCCCCCCEEEEECHHHHHHH-----HHHHHHHHCCCCCCEE----EECCC--CCCCCC-CCHHHHH
Q ss_conf 999999999-986100128886898511776579-----9998663013463111----10022--110036-6355799
Q gi|254780767|r 71 PQFIFRINQ-TVELIVSSKPDVLLIVDNPDFTHR-----VAKRVRKKMPNLPIIN----YVCPS--VWAWRE-GRARKMC 137 (383)
Q Consensus 71 ~~~~~~~~~-~~~~i~~~~Pd~vi~iD~pgFnl~-----lak~lkk~~~~ipvi~----yv~Pq--vWAWr~-~R~k~~~ 137 (383)
-.+++...+ +...+..++||++|.=-+| |-+| +-+++|...+ -++.- -=.|| .=-||. .-...+.
T Consensus 88 ~e~~~~Rs~lil~t~~~fkPDi~IVd~~P-~Glr~EL~ptL~yl~~~~t-~~vL~lr~i~D~p~~~~~~w~~~~~~~~I~ 165 (400)
T COG4671 88 EETKKLRSQLILSTAETFKPDIFIVDKFP-FGLRFELLPTLEYLKTTGT-RLVLGLRSIRDIPQELEADWRRAETVRLIN 165 (400)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCC-CCHHHHHHHHHHHHHHCCC-CCEEEHHHHHHCHHHHCCCHHHHHHHHHHH
T ss_conf 99999999999999983299789993555-4136546679999860598-625544765525444135144567999998
Q ss_pred HHHHHHCCC-----CCCCHHH--HHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECC-CCCCHHHH
Q ss_conf 999864015-----6774223--200255314763882112210013558889761876556505998538-74301230
Q gi|254780767|r 138 AYINQVISI-----LPFEKEV--MQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGS-RAQEIYKI 209 (383)
Q Consensus 138 ~~~d~~~~i-----fpFE~~~--f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGS-R~~EI~~~ 209 (383)
+|+|.+++- +.++.+| +... .-++.|+|- +....+..+.. ....+++..|++.+|- +.. ..+
T Consensus 166 r~yD~V~v~GdP~f~d~~~~~~~~~~i-~~k~~ytG~--vq~~~~~~~~p-----~~~~pE~~~Ilvs~GGG~dG--~eL 235 (400)
T COG4671 166 RFYDLVLVYGDPDFYDPLTEFPFAPAI-RAKMRYTGF--VQRSLPHLPLP-----PHEAPEGFDILVSVGGGADG--AEL 235 (400)
T ss_pred HHHEEEEEECCCCCCCHHHCCCCCHHH-HHHEEEEEE--EECCCCCCCCC-----CCCCCCCCEEEEECCCCHHH--HHH
T ss_conf 754079994695415732227860765-632667677--61367678898-----76787633399954887205--999
Q ss_pred CCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH-HCCC--CCEEEEECCCCHHHHHHHHHHHCCCHHHHH-HHHHH
Q ss_conf 5111899987640273512620166336889999996-0488--850552055203578876355233115668-88762
Q gi|254780767|r 210 LPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVS-KWDI--SPEIIIDKEQKKQVFMTCNAAMAASGTVIL-ELALC 285 (383)
Q Consensus 210 lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~--~~~i~~~~~~~~~~l~~sd~ai~~SGTaTL-E~al~ 285 (383)
+-.+++++..+..-++ +..+.+.|.......+.+. .... +..|.....+.-++++.|+.+++.+|-+|. |.-.+
T Consensus 236 i~~~l~A~~~l~~l~~--~~~ivtGP~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~vVSm~GYNTvCeILs~ 313 (400)
T COG4671 236 IETALAAAQLLAGLNH--KWLIVTGPFMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARLVVSMGGYNTVCEILSF 313 (400)
T ss_pred HHHHHHHHHHCCCCCC--CEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHEEEECCCCHHHHHHHHC
T ss_conf 9999987550778874--33898489998899999987425699728997330399998764403520462226688737
Q ss_pred CCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHH
Q ss_conf 753025405774100001024676102302440784261242054898999999999844989
Q gi|254780767|r 286 GIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTL 348 (383)
Q Consensus 286 g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~ 348 (383)
|+|.+|+-++.+-..-..|--+..-.+|+.. +-| ++.||+++++++...++-|.
T Consensus 314 ~k~aLivPr~~p~eEQliRA~Rl~~LGL~dv-----L~p----e~lt~~~La~al~~~l~~P~ 367 (400)
T COG4671 314 GKPALIVPRAAPREEQLIRAQRLEELGLVDV-----LLP----ENLTPQNLADALKAALARPS 367 (400)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCCEE-----ECC----CCCCHHHHHHHHHHCCCCCC
T ss_conf 9955984367873899999999986695103-----073----55896899999985426899
No 72
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.56 E-value=5.1e-06 Score=59.70 Aligned_cols=153 Identities=24% Similarity=0.174 Sum_probs=103.4
Q ss_pred CEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCC----HHHHHHHHHHHCCCCCEEEE-ECCCCHHHHHH
Q ss_conf 50599853874301230511189998764027351262016633----68899999960488850552-05520357887
Q gi|254780767|r 193 KKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSS----QENLVRCIVSKWDISPEIII-DKEQKKQVFMT 267 (383)
Q Consensus 193 ~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~i~~-~~~~~~~~l~~ 267 (383)
++|+ +=| |-.-+|. +..+++++..+.++.|+.++.+....+ .....+..+++.++..+|.+ ...+-.++|.+
T Consensus 294 ~~v~-~vg-Rv~p~Kd-i~tlI~A~~~v~~~~p~~rl~I~Gp~d~~~~y~~ec~~lv~~lgL~~~V~F~G~~dv~~~l~~ 370 (475)
T cd03813 294 PVVG-LIG-RVVPIKD-IKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTGFQNVKEYLPK 370 (475)
T ss_pred CEEE-EEE-ECCCCCC-HHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHH
T ss_conf 8899-997-0111669-999999999999868983999977998885899999999998299872798387898999985
Q ss_pred HHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCC--CCCCHHHCCCCCHHHHHHHH
Q ss_conf 63552331-----156688876275302540577410000102467610230244078--42612420548989999999
Q gi|254780767|r 268 CNAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDY--PLVPEYFNSMIRSEALVRWI 340 (383)
Q Consensus 268 sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~--~ivPEliQ~~~~~~~i~~~~ 340 (383)
+|+.+.+| |.+.||++.+|+|.| .-.++.....+.- . .|-..|+ .+|| --+++.+++++
T Consensus 371 ~Dv~vl~S~~Eg~plvllEAmA~G~PvV-aTdVGg~~e~v~~----~----~~~~~G~~G~lvp-----~~d~~~LA~ai 436 (475)
T cd03813 371 LDVLVLTSISEGQPLVILEAMAAGIPVV-ATDVGSCRELIEG----A----DDEALGPAGEVVP-----PADPEALARAI 436 (475)
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCCCEE-ECCCCCCHHHHCC----C----CCCCCCCCEEEEC-----CCCHHHHHHHH
T ss_conf 7999965733467579999997699889-7269981887538----6----6567788548969-----99999999999
Q ss_pred HHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 9984498999999999999999
Q gi|254780767|r 341 ERLSQDTLQRRAMLHGFENLWD 362 (383)
Q Consensus 341 ~~ll~d~~~r~~~~~~~~~~~~ 362 (383)
..++.|++.|++|-++..+--+
T Consensus 437 ~~Ll~d~~~r~~~g~~ar~rv~ 458 (475)
T cd03813 437 LRLLKDPELRRAMGEAGRKRVE 458 (475)
T ss_pred HHHHCCHHHHHHHHHHHHHHHH
T ss_conf 9997399999999999999999
No 73
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family; InterPro: IPR011875 This entry describes Corynebacterium glutamicum GlgA and closely related proteins in other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related IPR011835 from INTERPRO, family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor ..
Probab=98.51 E-value=2.6e-06 Score=61.57 Aligned_cols=332 Identities=17% Similarity=0.199 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCHHHHHC--CCEEEECHHH-CCEEEH--HHHHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 8999999999973899839999717899947--8806504445-311013--6746645999999999986100128886
Q gi|254780767|r 17 LLAGDLIKSLKEMVSYPINLVGVGGPSLQKE--GLVSLFDFSE-LSVIGI--MQVVRHLPQFIFRINQTVELIVSSKPDV 91 (383)
Q Consensus 17 ~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~--G~~~~~~~~~-l~v~G~--~evl~~~~~~~~~~~~~~~~i~~~~Pd~ 91 (383)
+|.-.|.++|.++. ++.+..+|+++-++. .+-.-++.+. |.|.|. ++-|..= +--+..+.++.+--|+
T Consensus 20 VHv~~L~~~L~~l~--~vdVr~fG~~rteadiPaiPna~~~~gsL~v~~Y~~~~~L~~G-----ldPran~aL~tfSvDL 92 (416)
T TIGR02149 20 VHVEELARELARLV--DVDVRCFGDKRTEADIPAIPNAFFSEGSLKVLGYRPWSELKEG-----LDPRANKALKTFSVDL 92 (416)
T ss_pred HHHHHHHHHHHHHC--CEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHCCC-----CCHHHHHHHCCHHHHH
T ss_conf 11888999998653--4004643887442334566622168983288740787432256-----7722575402311578
Q ss_pred EEEECHHHH--------HHHHHHHHHHHCCCCCCE---EEECCCCCCCCCCCHHHH--------------HHHHHH----
Q ss_conf 898511776--------579999866301346311---110022110036635579--------------999986----
Q gi|254780767|r 92 LLIVDNPDF--------THRVAKRVRKKMPNLPII---NYVCPSVWAWREGRARKM--------------CAYINQ---- 142 (383)
Q Consensus 92 vi~iD~pgF--------nl~lak~lkk~~~~ipvi---~yv~PqvWAWr~~R~k~~--------------~~~~d~---- 142 (383)
++.=|.-+= ==-||-+|=|..+|+|.+ |=-=| -|+|....+ -+..|.
T Consensus 93 ~m~~d~~~~~vvHsHTWYa~LAG~LAk~Lyd~PlVvTaHSLEP----LRPWK~EQLGgGY~lSsW~EktA~~aAd~vIAV 168 (416)
T TIGR02149 93 AMANDVEDADVVHSHTWYAALAGHLAKLLYDVPLVVTAHSLEP----LRPWKKEQLGGGYKLSSWAEKTAIEAADRVIAV 168 (416)
T ss_pred HHHHHHCCCCEEECHHHHHHHHHHHHHHHCCCCEEEEEECCCC----CCCCHHHHCCCCCCCCHHHHHHHHHHCCCEEEH
T ss_conf 8761100271553207888789999999669983997303788----871317565897420247888899850406531
Q ss_pred -------HCCCCCCCHHHHHCCCCCCEEECCCCCCCCCC-CCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHH
Q ss_conf -------40156774223200255314763882112210-0135588897618765565059985387430123051118
Q gi|254780767|r 143 -------VISILPFEKEVMQRLGGPPTTFVGHPLSSSPS-ILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFE 214 (383)
Q Consensus 143 -------~~~ifpFE~~~f~k~~~~~~~fVGHPl~d~~~-~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l 214 (383)
||..+|- .+. ..+.|.|=|==+.+.-+ ...++...+++.|++.++|.+++- | |-+ =.+-+|-++
T Consensus 169 S~amr~DiL~~YP~----lD~-~kv~Vv~NGId~~~y~~~~~~~~~~v~~~~Gid~~rP~~lFV-G-RIt-RQKGv~~L~ 240 (416)
T TIGR02149 169 SGAMREDILKVYPD----LDP-EKVHVVYNGIDTKEYKPAADDDGNKVLDRYGIDRSRPYVLFV-G-RIT-RQKGVPHLL 240 (416)
T ss_pred HHHCHHHHHCCCCC----CCC-CCEEEEECCCCHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEE-E-EEE-CCCCHHHHH
T ss_conf 11033558315868----884-646888647645760688887411346632679988878985-2-020-316558999
Q ss_pred HHHHHHHHCCCCCEEEECC----CCCHHHHHHHHHHHCCCC-CEE-E----EECCCCHHHHHHHHHHHCCC-----HHHH
Q ss_conf 9998764027351262016----633688999999604888-505-5----20552035788763552331-----1566
Q gi|254780767|r 215 SAVASLVKRNPFFRFSLVT----VSSQENLVRCIVSKWDIS-PEI-I----IDKEQKKQVFMTCNAAMAAS-----GTVI 279 (383)
Q Consensus 215 ~~~~~l~~~~~~~~~~i~~----~~~~~~~~~~~~~~~~~~-~~i-~----~~~~~~~~~l~~sd~ai~~S-----GTaT 279 (383)
++++.+.+ +.|.++.+ +|+..+.++..+++...+ ..| . +...+-.++++.|++=+|-| |-+.
T Consensus 241 ~A~~~~~~---dvqvVLCAgapDTPEv~~Ev~~~~a~l~~~R~gv~WI~~ml~~~~~~~L~~~A~vFvCPSvYEPLGIvN 317 (416)
T TIGR02149 241 KAVHLISK---DVQVVLCAGAPDTPEVAEEVRQAVAKLDREREGVIWIEKMLPKEELVELLSNAEVFVCPSVYEPLGIVN 317 (416)
T ss_pred HHHHHCCC---CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCEEECCCCCCCCCHHH
T ss_conf 99962552---035987067678720689999999988761698386356588789999984694786484425420556
Q ss_pred HHHHHHCCCEEEECCCCCCEEEEE-----ECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHH-
Q ss_conf 888762753025405774100001-----02467610230244078426124205489899999999984498999999-
Q gi|254780767|r 280 LELALCGIPVVSIYKSEWIVNFFI-----FYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAM- 353 (383)
Q Consensus 280 LE~al~g~P~IV~Yk~~~lt~~i~-----~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~- 353 (383)
||+|++++| ||.=+++.|-.-+. .||...- +.+-.-.|. ..+.-.+.||++++.++.|++.-++|
T Consensus 318 LEAMAC~tp-VVAS~~GGIpEVV~dg~TG~LV~~~~------lhdGtGtP~--d~d~f~~~LA~ai~~ll~dp~~A~k~G 388 (416)
T TIGR02149 318 LEAMACGTP-VVASAVGGIPEVVVDGETGFLVPIDD------LHDGTGTPD--DDDKFEADLAKAIDALLADPELAKKMG 388 (416)
T ss_pred HHHHHCCCC-EEECCCCCCCCEEECCCCCCCCCCCC------CCCCCCCCC--CCCHHHHHHHHHHHHHHCCHHHHHHHC
T ss_conf 878850786-34403689552683374431247014------557788888--740568999999999742957898834
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999999999838999989999999998
Q gi|254780767|r 354 LHGFENLWDRMNTKKPAGHMAAEIVLQ 380 (383)
Q Consensus 354 ~~~~~~~~~~Lg~~~~a~~~AA~~I~~ 380 (383)
.++.+...+.++...-|.++. ++-.+
T Consensus 389 ~aGr~R~~~~FSW~~iA~kT~-~~Y~~ 414 (416)
T TIGR02149 389 EAGRKRAVEEFSWESIAKKTV-ELYRK 414 (416)
T ss_pred HHHHHHHHHCCCHHHHHHHHH-HHHHH
T ss_conf 434655421257578999999-99874
No 74
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.50 E-value=3.7e-05 Score=54.01 Aligned_cols=218 Identities=16% Similarity=0.155 Sum_probs=122.8
Q ss_pred EEEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5999976821478999-999999973899839999717899947880650444531101367466459999999999861
Q gi|254780767|r 5 KIAVIAGEISGDLLAG-DLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVEL 83 (383)
Q Consensus 5 ki~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~ 83 (383)
||+|+.-..=||+.-+ .++++||+++| +.++.-++.+..++. ++..-.++++- ..+- +......+...++...
T Consensus 1 kILii~~~~iGD~i~~~p~i~~lk~~~P-~~~I~~l~~~~~~~l-~~~~p~id~vi---~~~~-~~~~~~~~~~~~~~~~ 74 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYP-DARITVLAPPWFAPL-LELMPEVDRVI---VLPK-KHGKLGLGARRRLARA 74 (279)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCC-CCEEEEEECHHHHHH-HHHCCCCCEEE---EECC-CCCCCCHHHHHHHHHH
T ss_conf 9899947850399999999999999887-998999989368999-96399857999---9535-4333478999999999
Q ss_pred CCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEE
Q ss_conf 00128886898511776579999866301346311110022110036635579999986401567742232002553147
Q gi|254780767|r 84 IVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQRLGGPPTT 163 (383)
Q Consensus 84 i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~~~~ 163 (383)
+++.+.|+++-.-. +.+.+-.+.. .++|..+- |+. +.. +
T Consensus 75 l~~~~~D~~i~~~~---~~~~~~~~~~--~~~~~~~g-------~~~-------------------~~~-~--------- 113 (279)
T cd03789 75 LRRRRYDLAIDLQG---SLRSALLPFL--AGAPRRIG-------FDG-------------------ERR-R--------- 113 (279)
T ss_pred HHHCCCCEEEECCC---CHHHHHHHHH--CCCCEEEE-------CCC-------------------HHH-C---------
T ss_conf 87649989998985---4589999998--49997996-------781-------------------342-0---------
Q ss_pred ECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCC--CHHHHHHHHHHCCCCCEEEECCCCCHHHHH
Q ss_conf 638821122100135588897618765565059985387430123051--118999876402735126201663368899
Q gi|254780767|r 164 FVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILP--FFESAVASLVKRNPFFRFSLVTVSSQENLV 241 (383)
Q Consensus 164 fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP--~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~ 241 (383)
.......+++|++.|||+.. .+.+| -+.+.++.+.++ ++++++...++..+..
T Consensus 114 ---------------------~~~~~~~~~~i~i~~ga~~~--~K~wp~~~~~~l~~~l~~~--~~~ivl~g~~~e~~~~ 168 (279)
T cd03789 114 ---------------------GLLTDVVKPVVVLPPGASGP--AKRWPAERFAALADRLLAR--GARVVLTGGPAERELA 168 (279)
T ss_pred ---------------------CCCCCCCCCEEEEECCCCCC--CCCCCHHHHHHHHHHHHHC--CCEEEEECCHHHHHHH
T ss_conf ---------------------33114799989995898973--4579899999999999858--9959993486689999
Q ss_pred HHHHHHCCCCCEEEE----ECCCCHHHHHHHHHHHCCC-HHHHHHHHHHCCCEEEECCC
Q ss_conf 999960488850552----0552035788763552331-15668887627530254057
Q gi|254780767|r 242 RCIVSKWDISPEIII----DKEQKKQVFMTCNAAMAAS-GTVILELALCGIPVVSIYKS 295 (383)
Q Consensus 242 ~~~~~~~~~~~~i~~----~~~~~~~~l~~sd~ai~~S-GTaTLE~al~g~P~IV~Yk~ 295 (383)
+......+....+.. .-.+...+++.||+.|+.. |+.. =+|++|+|+|++|-.
T Consensus 169 ~~i~~~~~~~~~~~l~g~~sl~el~~li~~a~l~I~~DTg~~H-lAaa~~~p~i~ifG~ 226 (279)
T cd03789 169 EEIAAALGGPRVVNLAGKTSLRELAALLARADLVVTNDSGPMH-LAAALGTPTVALFGP 226 (279)
T ss_pred HHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCEEEECCCHHHH-HHHHCCCCEEEEECC
T ss_conf 9999967999758368999999999999846833756877999-999849998999899
No 75
>PRK10125 predicted glycosyl transferase; Provisional
Probab=98.37 E-value=0.00023 Score=48.75 Aligned_cols=183 Identities=10% Similarity=-0.001 Sum_probs=94.6
Q ss_pred CCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHH
Q ss_conf 31476388211221001355888976187655650599853874301230511189998764027351262016633688
Q gi|254780767|r 160 PPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQEN 239 (383)
Q Consensus 160 ~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~ 239 (383)
.+++-+-||+=... .....+ ........+++.|+....+-..+.+. .-.+++++..+ ..+...++........
T Consensus 212 ~~v~vIpNgID~~~--~~~~~~-~~~~~~~~~~~~i~~~a~~~~~~~k~-~~~ll~~l~~l---~~~~~l~~~G~~~~~~ 284 (405)
T PRK10125 212 GRCRIINNGIDMAT--EAILAE-LPPVRETQGKPRIAVVAHDLRYDGKT-DQQLVREMMAL---GDKIELHTFGKFSPFT 284 (405)
T ss_pred CCEEEECCCCCCCC--CCCCHH-HHHHCCCCCCCEEEEEECCCCCCCHH-HHHHHHHHHHC---CCCEEEEEEECCCCCC
T ss_conf 98678389978543--444304-55404378997699995454456333-89999999844---8970899972576446
Q ss_pred HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEE
Q ss_conf 999999604888505520552035788763552331-----156688876275302540577410000102467610230
Q gi|254780767|r 240 LVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALP 314 (383)
Q Consensus 240 ~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~Lp 314 (383)
.. + -.....+....+..+++++||+-+..| |++.+|++.+|+| ||.++++.+...+.. +.
T Consensus 285 --~~---~-v~~lg~~~d~~~La~~YsaAd~~v~ps~~e~~~~~~~Ea~acg~p-vv~~~~~g~~~~~~~--~~------ 349 (405)
T PRK10125 285 --AG---N-VVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVP-VIATHSDAAREVLQK--SG------ 349 (405)
T ss_pred --CC---C-EEECCCCCCHHHHHHHHHHCCEEEECCHHHCCCHHHHHHHHCCCC-EEEECCCCCHHHEEC--CC------
T ss_conf --88---7-464687589999999996378897274675465089999974998-898359997365115--87------
Q ss_pred HHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 2440784261242054898999999999844989999999999999998389999899999999
Q gi|254780767|r 315 NLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAEIV 378 (383)
Q Consensus 315 Nii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I 378 (383)
--++ ..-..+.+++.+...+.+..+.....+..++..++.. ...+|.+.+
T Consensus 350 -----g~~~-----~~~d~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~fs----~~~~a~~Y~ 399 (405)
T PRK10125 350 -----GKTV-----SEEEVLQLAQLSKPEIAQAVFGTTLAEFSQRSRAAYS----GQQMLEEYV 399 (405)
T ss_pred -----CEEE-----CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC----HHHHHHHHH
T ss_conf -----4596-----6889999999899998460467789999999998679----999999999
No 76
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.34 E-value=6.1e-05 Score=52.56 Aligned_cols=90 Identities=20% Similarity=0.265 Sum_probs=62.9
Q ss_pred HHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEE-----CCCCHHHHHHHHHHHCCC-----HH
Q ss_conf 30511189998764027351262016633688999999604888505520-----552035788763552331-----15
Q gi|254780767|r 208 KILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEIIID-----KEQKKQVFMTCNAAMAAS-----GT 277 (383)
Q Consensus 208 ~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~l~~sd~ai~~S-----GT 277 (383)
+....+++++..+.++.++.++++.......+..............+... .++....++.||+.+.+| |.
T Consensus 117 K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~pS~~E~~~~ 196 (229)
T cd01635 117 KGLDDLIEAFALLKERGPDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGL 196 (229)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCEEEECCCCCCCCH
T ss_conf 29999999999988678994899996880688999999972887746323622106789999970680660566678888
Q ss_pred HHHHHHHHCCCEEEECCCCCC
Q ss_conf 668887627530254057741
Q gi|254780767|r 278 VILELALCGIPVVSIYKSEWI 298 (383)
Q Consensus 278 aTLE~al~g~P~IV~Yk~~~l 298 (383)
+.+|++.+|+|.| ++.....
T Consensus 197 ~~~EA~a~G~pvi-~~~~gg~ 216 (229)
T cd01635 197 VVLEAMACGLPVI-ATDVGGP 216 (229)
T ss_pred HHHHHHHCCCCEE-ECCCCCC
T ss_conf 9999998299899-8789983
No 77
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.06 E-value=0.00024 Score=48.59 Aligned_cols=163 Identities=12% Similarity=0.122 Sum_probs=99.2
Q ss_pred HHHHHHHCCCCCCCCE-EEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCC--CHHHHHHHHHHHCCCCCEEE
Q ss_conf 5888976187655650-59985387430123051118999876402735126201663--36889999996048885055
Q gi|254780767|r 179 YSQRNKQRNTPSQWKK-ILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVS--SQENLVRCIVSKWDISPEII 255 (383)
Q Consensus 179 ~~~~~~~~~~~~~~~~-I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~i~ 255 (383)
+...++++|+..+... +.++- ||-.+ .+.+.++++++..+.++ +.+|++.... ..+..+......++.+....
T Consensus 281 k~~l~~~~gl~~d~~~pl~~~v-gRl~~-qKG~dll~~a~~~~~~~--~~~~vi~G~G~~~~e~~~~~l~~~~~~~~~~~ 356 (476)
T cd03791 281 KAALQEELGLPVDPDAPLFGFV-GRLTE-QKGIDLLLEALPELLEL--GGQLVILGSGDPEYEEALRELAARYPGRVAVL 356 (476)
T ss_pred HHHHHHHHCCCCCCCCCEEEEE-ECCCC-CCCHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9999999598978998689994-23520-24899999999999963--98899994697789999999997689959999
Q ss_pred EECCC--CHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHC
Q ss_conf 20552--035788763552331-----15668887627530254057741000010246761023024407842612420
Q gi|254780767|r 256 IDKEQ--KKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFN 328 (383)
Q Consensus 256 ~~~~~--~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ 328 (383)
...++ ...+++.||+.++.| |-+.||++.+|+|.|+ -+++.|.-.+.-.-... +--.=|+-
T Consensus 357 ~~~~e~l~~~lya~aD~~l~PS~~EP~Gl~qleAm~~GtppIa-~~tGGL~dtV~d~~~~~-----------~~~tGf~f 424 (476)
T cd03791 357 IGYDEALAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIV-RATGGLADTVIDYNEDT-----------GEGTGFVF 424 (476)
T ss_pred EECCHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHCCCCEEE-CCCCCCCCEEECCCCCC-----------CCCCEEEE
T ss_conf 8068788999998499974255457854899999866997598-06999865100366677-----------77745886
Q ss_pred CCCCHHHHHHHHHH---HHCCHHHHHHHHHHH
Q ss_conf 54898999999999---844989999999999
Q gi|254780767|r 329 SMIRSEALVRWIER---LSQDTLQRRAMLHGF 357 (383)
Q Consensus 329 ~~~~~~~i~~~~~~---ll~d~~~r~~~~~~~ 357 (383)
+..+++.++.++.+ +.+|++..+++..+.
T Consensus 425 ~~~~~~~l~~ai~~al~~~~~~~~~~~l~~~a 456 (476)
T cd03791 425 EGYNADALLAALRRALALYRDPEAWRKLQRNA 456 (476)
T ss_pred CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 79999999999999999857999999999988
No 78
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.04 E-value=0.0015 Score=43.45 Aligned_cols=255 Identities=16% Similarity=0.222 Sum_probs=135.8
Q ss_pred HHHHHHHCCCCCCCEEEEECHHH--HHHHHHHHHHHHCCCCCCEEEE-CCC--------CC------------CCCCCC-
Q ss_conf 99998610012888689851177--6579999866301346311110-022--------11------------003663-
Q gi|254780767|r 77 INQTVELIVSSKPDVLLIVDNPD--FTHRVAKRVRKKMPNLPIINYV-CPS--------VW------------AWREGR- 132 (383)
Q Consensus 77 ~~~~~~~i~~~~Pd~vi~iD~pg--Fnl~lak~lkk~~~~ipvi~yv-~Pq--------vW------------AWr~~R- 132 (383)
+.-..+.+....||++ ||.-| |.++++|.+. ++||+.|+ -|+ |+ |++..+
T Consensus 96 ~~l~~eal~~~~pdvf--iDt~g~af~~pl~k~~~----~~~V~~Y~HyP~is~Dml~~v~~~~~~~nn~~~ia~~~~~s 169 (419)
T cd03806 96 MILGLEALLKLVPDIF--IDTMGYPFTYPLVRLLG----GCPVGAYVHYPTISTDMLQKVRSREASYNNSATIARSPVLS 169 (419)
T ss_pred HHHHHHHHHHCCCCEE--EECCCCHHHHHHHHHCC----CCCEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHCCCHHH
T ss_conf 9999999964699889--96786321678999737----98469997288762779998861232234202432232778
Q ss_pred -HHHH------------HHHHHHHCCCCCCCHHHHHCCCC--CCEEECCCCCCCCCCCCCCHHHHHHHCCCC--CCCCEE
Q ss_conf -5579------------99998640156774223200255--314763882112210013558889761876--556505
Q gi|254780767|r 133 -ARKM------------CAYINQVISILPFEKEVMQRLGG--PPTTFVGHPLSSSPSILEVYSQRNKQRNTP--SQWKKI 195 (383)
Q Consensus 133 -~k~~------------~~~~d~~~~ifpFE~~~f~k~~~--~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~--~~~~~I 195 (383)
+|.+ -++.|.+++.=-|-...+++.=+ .+++-| .|=.|. +. ....... ...+.+
T Consensus 170 ~~K~lY~~~f~~ly~~~~~~ad~v~vNS~~T~~~i~~~w~~~~~~~Vv-YPP~d~-------~~-~~~~~~~~~~~~~~i 240 (419)
T cd03806 170 KAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRSLWKRNTKPSIV-YPPCDV-------EE-LLKLPLDEKTRENQI 240 (419)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCCCCC-CCCCCH-------HH-HCCCCCCCCCCCCEE
T ss_conf 999999999999999972577499985786999999983888886414-799776-------77-453665423576679
Q ss_pred EEEECCCCCCHHHHCCCHHHHHHHHHHCCC-----CCEEEECCCC---CHHH---HHHHHHHHCCCCCEEEEE----CCC
Q ss_conf 998538743012305111899987640273-----5126201663---3688---999999604888505520----552
Q gi|254780767|r 196 LLLPGSRAQEIYKILPFFESAVASLVKRNP-----FFRFSLVTVS---SQEN---LVRCIVSKWDISPEIIID----KEQ 260 (383)
Q Consensus 196 ~llPGSR~~EI~~~lP~~l~~~~~l~~~~~-----~~~~~i~~~~---~~~~---~~~~~~~~~~~~~~i~~~----~~~ 260 (383)
.-+ +| =|=+++.++.+++..++.++.+ +.+.+++... +..+ .++....+.+++.+|.+. .++
T Consensus 241 lSi--~r-frpeKn~~L~i~af~~l~~~~~~~~~~~~~Lvi~Gg~R~~ed~~~~~~L~~la~~l~l~~~V~f~~~~s~~e 317 (419)
T cd03806 241 LSI--AQ-FRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEE 317 (419)
T ss_pred EEE--EC-CCCCCCHHHHHHHHHHHHHHCCHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHH
T ss_conf 998--64-554568699999999998746301056855999948876556999999999999729988769981599899
Q ss_pred CHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHH
Q ss_conf 035788763552331-----156688876275302540577410000102467610230244078426124205489899
Q gi|254780767|r 261 KKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEA 335 (383)
Q Consensus 261 ~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~ 335 (383)
..+.|+.|.+.|-|- |-+.+|+++.|+|+|+.=.-+|..-.+.-. .+.+ .=|+-+ +++.
T Consensus 318 ~~~lL~~a~~~l~T~~nEHFGI~pVEaMaaG~pvvA~nSGGP~edIV~~~------------~~~~--tGfL~~--~~~e 381 (419)
T cd03806 318 LLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPW------------DGGP--TGFLAS--TAEE 381 (419)
T ss_pred HHHHHHHCEEEEECCCCCCCCCHHHHHHHCCCCEEEECCCCCCCCEEEEC------------CCCC--CCCCCC--CHHH
T ss_conf 99999739798855732566858999986699579978889753077605------------8998--511279--8799
Q ss_pred HHHHHHHHHCCH-HHHHHHHHHHHHHHHHHC
Q ss_conf 999999984498-999999999999999838
Q gi|254780767|r 336 LVRWIERLSQDT-LQRRAMLHGFENLWDRMN 365 (383)
Q Consensus 336 i~~~~~~ll~d~-~~r~~~~~~~~~~~~~Lg 365 (383)
-++++.++++.+ +.+.++..+.+...++.+
T Consensus 382 ~a~a~~~~l~~~~~~~~~~~~~ar~~~~rFS 412 (419)
T cd03806 382 YAEAIEKILSLSEEERLRIRRAARSSVKRFS 412 (419)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999981998789999999999998468
No 79
>pfam01075 Glyco_transf_9 Glycosyltransferase family 9 (heptosyltransferase). Members of this family belong to glycosyltransferase family 9. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. All of these enzymes transfer heptose to the lipopolysaccharide core.
Probab=97.72 E-value=0.00051 Score=46.49 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=65.4
Q ss_pred CCCCCEEEEEECCCCCCHHHHCC--CHHHHHHHHHHCCCCCEEEECCCCCH-HHHH-HHHHHHCCCCCEEEE---ECCCC
Q ss_conf 65565059985387430123051--11899987640273512620166336-8899-999960488850552---05520
Q gi|254780767|r 189 PSQWKKILLLPGSRAQEIYKILP--FFESAVASLVKRNPFFRFSLVTVSSQ-ENLV-RCIVSKWDISPEIII---DKEQK 261 (383)
Q Consensus 189 ~~~~~~I~llPGSR~~EI~~~lP--~~l~~~~~l~~~~~~~~~~i~~~~~~-~~~~-~~~~~~~~~~~~i~~---~~~~~ 261 (383)
..++++|++.|||+.. .+.+| -|.+.++.+.+++ ..+++...++. +... +.............. .-.+.
T Consensus 104 ~~~~~~i~i~pga~~~--~K~Wp~e~f~~L~~~l~~~~--~~vvl~gg~~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el 179 (249)
T pfam01075 104 NGGRPYIAFCPGASRP--AKRWPAEHFAELAQALQERG--WQVVLFGGAEDREEEIAKRLAAGLRTPCVNLLGKTSLEQA 179 (249)
T ss_pred CCCCCEEEEECCCCCC--CCCCCHHHHHHHHHHHHHCC--CCEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHH
T ss_conf 2599989997387885--67799999999999999669--9569973867899999999986389986862699999999
Q ss_pred HHHHHHHHHHHCC-CHHHHHHHHHHCCCEEEECCCC
Q ss_conf 3578876355233-1156688876275302540577
Q gi|254780767|r 262 KQVFMTCNAAMAA-SGTVILELALCGIPVVSIYKSE 296 (383)
Q Consensus 262 ~~~l~~sd~ai~~-SGTaTLE~al~g~P~IV~Yk~~ 296 (383)
-.+++.||+.|+. ||... =++++|+|+|.+|-.+
T Consensus 180 ~ali~~a~l~I~nDSGp~H-iAaA~g~Pti~ifGpT 214 (249)
T pfam01075 180 AALLAGADLVVGNDSGLMH-LAAALDRPVIGLYGPT 214 (249)
T ss_pred HHHHHHCCEEEECCCHHHH-HHHHCCCCEEEEECCC
T ss_conf 9999850668857985999-9998399889997889
No 80
>pfam00201 UDPGT UDP-glucoronosyl and UDP-glucosyl transferase.
Probab=97.71 E-value=0.0052 Score=39.83 Aligned_cols=105 Identities=12% Similarity=0.009 Sum_probs=62.9
Q ss_pred CCCHHHHHHH--HHHHCCCHHHHH-HHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHH
Q ss_conf 5203578876--355233115668-8876275302540577410000102467610230244078426124205489899
Q gi|254780767|r 259 EQKKQVFMTC--NAAMAASGTVIL-ELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEA 335 (383)
Q Consensus 259 ~~~~~~l~~s--d~ai~~SGTaTL-E~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~ 335 (383)
-...++|++. ++-|+-.|-.+. |++..|+|||++-=..= ...-++.+.-.-+|+. +--.++|.++
T Consensus 331 ~PQ~dILaHp~vklFITHgG~~S~~Eai~~GVP~v~iP~f~D-Q~~Na~~~~~~G~g~~-----------l~~~~lt~~~ 398 (501)
T pfam00201 331 LPQNDLLGHPKTRAFVTHAGSNGVYEAICHGVPMVGMPLFGD-QMDNAKHMEAKGAAVT-----------LNVLTMTSED 398 (501)
T ss_pred CCHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCC-HHHHHHHHHHCCCEEE-----------EECCCCCHHH
T ss_conf 882667619871189965873069999985989897156344-6999999997797899-----------6321199999
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 9999999844989999999999999998389999899999999
Q gi|254780767|r 336 LVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAEIV 378 (383)
Q Consensus 336 i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I 378 (383)
+.+++.++++|+.++++...-.+-++++ +-.+-++|...+
T Consensus 399 l~~ai~~vl~n~~Y~~na~~~s~~~~d~---P~~p~~~av~w~ 438 (501)
T pfam00201 399 LLNALKTVINDPSYKENIMRLSSIHHDQ---PVKPLDRAVFWI 438 (501)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHCC---CCCHHHHHHHHH
T ss_conf 9999999970988999999999998659---999899999999
No 81
>pfam04464 Glyphos_transf CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.
Probab=97.60 E-value=0.0016 Score=43.26 Aligned_cols=179 Identities=11% Similarity=0.085 Sum_probs=95.7
Q ss_pred HHHCCCCCCCCEEEEEECCCCCCHHHH----CCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 976187655650599853874301230----5111899987640273512620166336889999996048885055205
Q gi|254780767|r 183 NKQRNTPSQWKKILLLPGSRAQEIYKI----LPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEIIIDK 258 (383)
Q Consensus 183 ~~~~~~~~~~~~I~llPGSR~~EI~~~----lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 258 (383)
++++|+++++++|+..|-=|...-... .+.-.+.+.+..++ ++.+++=.-+......... ............
T Consensus 2 k~~lgl~~~kkvILYaPT~R~~~~~~~~~~~~~~~~~~l~~~l~~--n~~liik~Hp~~~~~~~~~--~~~~~~~~~~~~ 77 (186)
T pfam04464 2 REELGIPKDKKVILYAPTFRDDGYYSAGSILFNLDLEKLLEKLGE--NYVILVKLHPLVSNSIINK--RYDSDVIDVSDY 77 (186)
T ss_pred HHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCC--CEEEEEEECHHHHCCHHHH--CCCCCEEECCCC
T ss_conf 264199998979998697338866554443230139999987276--8399997266764000220--257767978898
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHH
Q ss_conf 52035788763552331156688876275302540577410000102467610230244078426124205489899999
Q gi|254780767|r 259 EQKKQVFMTCNAAMAASGTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVR 338 (383)
Q Consensus 259 ~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~ 338 (383)
.+.+++|..||+.|+=--++..|.++++.| ||.|.-.+=.|.-.+-.-..+ ....-|.. --+.+.+..
T Consensus 78 ~di~~ll~~aDiLITDYSSi~fD~lll~kP-ii~~~~D~~~Y~~~rg~~~d~---~~~~~g~~--------v~~~~eL~~ 145 (186)
T pfam04464 78 SDIQDLFLASDILITDYSSVFFDFALLDKP-IIFYAPDLEEYRELRGFYFDY---EKEAPGPV--------VKTFEELLD 145 (186)
T ss_pred CCHHHHHHHHCEEEEEHHHHHHHHHHHCCC-EEEEECCHHHHHHCCCCCCCH---HHCCCCCE--------ECCHHHHHH
T ss_conf 589999998436776468899999987997-899818789997525861058---78078762--------598999999
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHH
Q ss_conf 999984498999999999999999838--999989999999998
Q gi|254780767|r 339 WIERLSQDTLQRRAMLHGFENLWDRMN--TKKPAGHMAAEIVLQ 380 (383)
Q Consensus 339 ~~~~ll~d~~~r~~~~~~~~~~~~~Lg--~~~~a~~~AA~~I~~ 380 (383)
++...+.++.... +..++..+++. ..|.+++++++.|.+
T Consensus 146 ~i~~~~~~~~~~~---~~~~~~~~~~~~~~DG~s~eRv~~~I~~ 186 (186)
T pfam04464 146 ALKNYMENDEEYA---EKRRAFRDKFFPYDDGKSSERVLNRIFK 186 (186)
T ss_pred HHHHHHHCCHHHH---HHHHHHHHHHCCCCCCCHHHHHHHHHHC
T ss_conf 9999875776779---9999999982887588089999999839
No 82
>pfam03033 Glyco_transf_28 Glycosyltransferase family 28 N-terminal domain. The glycosyltransferase family 28 includes monogalactosyldiacylglycerol synthase (EC 2.4.1.46) and UDP-N-acetylglucosamine transferase (EC 2.4.1.-). This N-terminal domain contains the acceptor binding site and likely membrane association site. This family also contains a large number of proteins that probably have quite distinct activities.
Probab=97.41 E-value=0.00089 Score=44.87 Aligned_cols=106 Identities=15% Similarity=0.242 Sum_probs=70.2
Q ss_pred EEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEEEECC-HHHHHCCCEEEECHHHCCEEE----HHHHHHHHHHHHHHHHH
Q ss_conf 999976821478999-999999973899839999717-899947880650444531101----36746645999999999
Q gi|254780767|r 6 IAVIAGEISGDLLAG-DLIKSLKEMVSYPINLVGVGG-PSLQKEGLVSLFDFSELSVIG----IMQVVRHLPQFIFRINQ 79 (383)
Q Consensus 6 i~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~giGG-~~m~~~G~~~~~~~~~l~v~G----~~evl~~~~~~~~~~~~ 79 (383)
|++++|.+.||++.+ .|.++|+++ ++++. +|. ++|++.=.+.-+++..++.-| .+..++...++.+.+.+
T Consensus 1 Ilia~GGTGGHv~Palala~~L~~~-g~~v~---igt~~~~e~~v~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (136)
T pfam03033 1 VLLAGGGTRGHVFPAVALAWALRRR-GHEVR---LGTPPGLEEFVEEAGLPFVPIGGDGLRRKSLKNLKEPLEGGRALRQ 76 (136)
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHC-CCEEE---ECCCCCHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9899441579999999999999985-99771---2158028888753598189962798546759999999999999999
Q ss_pred HHHHCCCCCCCEEEEE-CHHHHHHHHHHHHHHHCCCCCC-EE
Q ss_conf 9861001288868985-1177657999986630134631-11
Q gi|254780767|r 80 TVELIVSSKPDVLLIV-DNPDFTHRVAKRVRKKMPNLPI-IN 119 (383)
Q Consensus 80 ~~~~i~~~~Pd~vi~i-D~pgFnl~lak~lkk~~~~ipv-i~ 119 (383)
....+++.+||+||.. .|+.+-.-+|.++. ++|+ +|
T Consensus 77 ~~~~l~~~kp~~vig~GGy~s~p~~~aa~~~----~ip~~ih 114 (136)
T pfam03033 77 AKEILKEFKPDLVIGFGGYVAVPALIAAPLA----GIPLIVH 114 (136)
T ss_pred HHHHHHHCCCCEEECCCCCCCHHHHHHHHHC----CCCEEEE
T ss_conf 9999985699889743885422899999983----9988998
No 83
>pfam06258 DUF1022 Protein of unknown function (DUF1022). This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=97.29 E-value=0.0071 Score=38.94 Aligned_cols=224 Identities=13% Similarity=0.109 Sum_probs=108.0
Q ss_pred ECHHHCCEEEHHHHHHHH--HHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHC-CCCCCEEEECCCCCCCC
Q ss_conf 044453110136746645--999999999986100128886898511776579999866301-34631111002211003
Q gi|254780767|r 53 FDFSELSVIGIMQVVRHL--PQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKM-PNLPIINYVCPSVWAWR 129 (383)
Q Consensus 53 ~~~~~l~v~G~~evl~~~--~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~-~~ipvi~yv~PqvWAWr 129 (383)
+...++.+..++..++.+ +........-...+..-.||++|..-- -....+..+|++. .++.+||.--|.++.
T Consensus 18 ~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~PdliIs~Gr--~t~~~~~~lkr~~~~~~~~I~i~~P~~~~-- 93 (308)
T pfam06258 18 YEIREVRVRKPWRWLPRRLPAPLWAILGPFAPALEPPWPDLVIGAGR--QTHPLLRLLRRLSGGKTKTVQIMDPRLPL-- 93 (308)
T ss_pred CEEEEEECCCHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCEEEECCC--HHHHHHHHHHHHCCCCCEEEEEECCCCCC--
T ss_conf 71799952867775676578504554234541115899988997881--47999999999749996799981899881--
Q ss_pred CCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEECCCC--CCCCCCCCCCHHHHHHHCCCCCCCCEEE-EEECCCCC-C
Q ss_conf 663557999998640156774223200255314763882--1122100135588897618765565059-98538743-0
Q gi|254780767|r 130 EGRARKMCAYINQVISILPFEKEVMQRLGGPPTTFVGHP--LSSSPSILEVYSQRNKQRNTPSQWKKIL-LLPGSRAQ-E 205 (383)
Q Consensus 130 ~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~~~~fVGHP--l~d~~~~~~~~~~~~~~~~~~~~~~~I~-llPGSR~~-E 205 (383)
+.+|.+++ | |.+-..+-.| -....|-| +.+.- .......+ .+.... .++.++ |..|+-+. .
T Consensus 94 --------~~FDliv~--P-~HD~~~~g~N-Vi~t~gal~~i~~~~-l~~~~~~~-~~~~~~-~~p~i~vLIGG~sk~~~ 158 (308)
T pfam06258 94 --------GRFDLVIA--P-EHDGVPPGPN-VLLTVGALHRVTPQR-LAEAAAAW-PELAAL-PRPRVAVLVGGPSKHFR 158 (308)
T ss_pred --------CCCCCEEC--C-CCCCCCCCCC-EEEECCCCCCCCHHH-HHHHHHHH-HHHCCC-CCCEEEEEECCCCCCCC
T ss_conf --------34771025--7-4558889997-896257555478778-87777665-540247-78769999655787888
Q ss_pred HHH-HCCCHHHHHHHHHHCCCCCEEEECCCC-CHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHHCCCHHHH
Q ss_conf 123-051118999876402735126201663-3688999999604888505520552----0357887635523311566
Q gi|254780767|r 206 IYK-ILPFFESAVASLVKRNPFFRFSLVTVS-SQENLVRCIVSKWDISPEIIIDKEQ----KKQVFMTCNAAMAASGTVI 279 (383)
Q Consensus 206 I~~-~lP~~l~~~~~l~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~l~~sd~ai~~SGTaT 279 (383)
... .+--+.+.+..+.+.+ +.++.+.... +-+...............+.+..+. ....|+.||..++|+-.++
T Consensus 159 ~~~~~~~~l~~~i~~l~~~~-~~~l~it~SRRTP~~~~~~l~~~~~~~~~~~~~~~~~~Npy~~~L~~Ad~iiVT~DSvS 237 (308)
T pfam06258 159 WDADAARRLLEQLQALLEAY-GGSLLITTSRRTPEAAEAALRKLLGPRPGLYVWDGTGPNPYFGFLAWADAVVVTADSVS 237 (308)
T ss_pred CCHHHHHHHHHHHHHHHHHC-CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCEEEEECCHHH
T ss_conf 89999999999999999877-97299994688969999999986089972898279886458999985886899067188
Q ss_pred H--HHHHHCCCEEEECCCCC
Q ss_conf 8--88762753025405774
Q gi|254780767|r 280 L--ELALCGIPVVSIYKSEW 297 (383)
Q Consensus 280 L--E~al~g~P~IV~Yk~~~ 297 (383)
+ |++..|.|.-| +.+.+
T Consensus 238 MisEA~~tGkPV~i-~~l~~ 256 (308)
T pfam06258 238 MVSEAAATGAPVGV-LPLEG 256 (308)
T ss_pred HHHHHHHCCCCEEE-EECCC
T ss_conf 99999864997799-96776
No 84
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.23 E-value=0.021 Score=35.83 Aligned_cols=256 Identities=16% Similarity=0.160 Sum_probs=133.7
Q ss_pred CEEEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEE-HHHHHHHHHHHHHHHHHHH
Q ss_conf 45999976821478999-999999973899839999717899947880650444531101-3674664599999999998
Q gi|254780767|r 4 LKIAVIAGEISGDLLAG-DLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIG-IMQVVRHLPQFIFRINQTV 81 (383)
Q Consensus 4 mki~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G-~~evl~~~~~~~~~~~~~~ 81 (383)
|||+.++-.--|..|-+ .|.+.|-. ..+.....+- ..++-.- ||-..--++-....+....
T Consensus 1 ~ki~aisD~RtGnt~QaiaLa~~l~r-~eyttk~l~~----------------~~l~~lP~~wl~~yp~~~~~~l~~~~~ 63 (329)
T COG3660 1 MKIWAISDGRTGNTHQAIALAEQLTR-SEYTTKLLEY----------------NNLAKLPNFWLAYYPIHILRELFGPRL 63 (329)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC-CCEEEEEEEC----------------CCCCCCCHHHHHCCCCHHHHHHHCCCC
T ss_conf 93489615877638999999998604-6437899512----------------200127446651276276787636700
Q ss_pred HHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHH----C
Q ss_conf 6100128886898511776-5799998663013463111100221100366355799999864015677422320----0
Q gi|254780767|r 82 ELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQ----R 156 (383)
Q Consensus 82 ~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~----k 156 (383)
..-.+.+||++|.. |+ ...++-++||+.-|++++|.--|.+ +.| .+|.+++ | +.++-+ +
T Consensus 64 ~r~p~~~Pdl~I~a---Grrta~l~~~lkk~~~~~~vVqI~~Prl----p~~------~fDlviv--p-~HD~~~~~s~~ 127 (329)
T COG3660 64 SRKPEQRPDLIITA---GRRTAPLAFYLKKKFGGIKVVQIQDPRL----PYN------HFDLVIV--P-YHDWREELSDQ 127 (329)
T ss_pred CCCCCCCCCEEEEC---CCCHHHHHHHHHHHCCCCEEEEEECCCC----CCC------CCEEEEC--C-CHHHHHHHHCC
T ss_conf 01755798558861---5210078999998618953899507999----853------0217842--6-02466653115
Q ss_pred CCCCCEEECC--CCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEC-CCCCCHHHHCCCHHHHHHHHHHCC--CCCEEEE
Q ss_conf 2553147638--8211221001355888976187655650599853-874301230511189998764027--3512620
Q gi|254780767|r 157 LGGPPTTFVG--HPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPG-SRAQEIYKILPFFESAVASLVKRN--PFFRFSL 231 (383)
Q Consensus 157 ~~~~~~~fVG--HPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPG-SR~~EI~~~lP~~l~~~~~l~~~~--~~~~~~i 231 (383)
.+++ -.-+| |++.+.. ....-+..+.+. +..++.+++|=| +-++ -..+=..-.+.+..+.+.. -...|++
T Consensus 128 ~~Ni-lpi~Gs~h~Vt~~~--lAa~~e~~~~~~-p~~rq~vAVlVGg~nk~-f~~~~d~a~q~~~~l~k~l~~~g~~~li 202 (329)
T COG3660 128 GPNI-LPINGSPHNVTSQR--LAALREAFKHLL-PLPRQRVAVLVGGNNKA-FVFQEDKAHQFASLLVKILENQGGSFLI 202 (329)
T ss_pred CCCE-EECCCCCCCCCHHH--HHHHHHHHHHHC-CCCCCEEEEEECCCCCC-CCCCHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 7845-54268877565777--564588878637-78774499996678877-7667789999999999998747851899
Q ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEEC------CCCHHHHHHHHHHHCCCHHHHH--HHHHHCCCEEEECCCCC
Q ss_conf 166336889999996048885055205------5203578876355233115668--88762753025405774
Q gi|254780767|r 232 VTVSSQENLVRCIVSKWDISPEIIIDK------EQKKQVFMTCNAAMAASGTVIL--ELALCGIPVVSIYKSEW 297 (383)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~~~l~~sd~ai~~SGTaTL--E~al~g~P~IV~Yk~~~ 297 (383)
....-..+..++.+++.-.....+... ....+.|+++|.-|++.-.+++ |+|..|.|.-+.|-.++
T Consensus 203 sfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSinM~sEAasTgkPv~~~~~~~~ 276 (329)
T COG3660 203 SFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADSINMCSEAASTGKPVFILEPPNF 276 (329)
T ss_pred EEECCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHCCEEEEECCHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 96068917899999713566844573798789881688885213378704301245787604997599806986
No 85
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type; InterPro: IPR011835 This family consists of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; GO: 0009011 starch synthase activity, 0009250 glucan biosynthetic process.
Probab=96.91 E-value=0.041 Score=33.91 Aligned_cols=304 Identities=15% Similarity=0.139 Sum_probs=177.7
Q ss_pred CEEEEEECCHH-HHHCCCEEEECHHHCCEE-EHHHHHHHHHHHHHHHHHHHHHC----CCCCCC-EEEEECHHHHHHHHH
Q ss_conf 83999971789-994788065044453110-13674664599999999998610----012888-689851177657999
Q gi|254780767|r 33 PINLVGVGGPS-LQKEGLVSLFDFSELSVI-GIMQVVRHLPQFIFRINQTVELI----VSSKPD-VLLIVDNPDFTHRVA 105 (383)
Q Consensus 33 ~~~~~giGG~~-m~~~G~~~~~~~~~l~v~-G~~evl~~~~~~~~~~~~~~~~i----~~~~Pd-~vi~iD~pgFnl~la 105 (383)
++.++-|+.+. .-..+-+...|.+ -- +..|-..++-.|-+..-++...+ ..++|| +|.+=|..-= -+.
T Consensus 87 ~~~~yfi~~~~~~f~R~~~~Ygd~~---g~~d~~D~~~RF~~F~~Aa~e~~~~~~~~~~~~~PDN~vH~HDWhta--L~P 161 (517)
T TIGR02095 87 GVPVYFIDNPSNLFDRPGRIYGDDN---GQPDYPDNAERFAFFSRAAAELLSGLLLLPLGWQPDNVVHAHDWHTA--LVP 161 (517)
T ss_pred CEEEEEECCHHHHCCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHH--HHH
T ss_conf 7149996071551468686548888---87578750899999999999997412123344688807996576899--999
Q ss_pred HHHHHHC-----CCCCCE---E------EECC-CCCCC--------------------CCCCHHHHH---HHHHHHCCCC
Q ss_conf 9866301-----346311---1------1002-21100--------------------366355799---9998640156
Q gi|254780767|r 106 KRVRKKM-----PNLPII---N------YVCP-SVWAW--------------------REGRARKMC---AYINQVISIL 147 (383)
Q Consensus 106 k~lkk~~-----~~ipvi---~------yv~P-qvWAW--------------------r~~R~k~~~---~~~d~~~~if 147 (383)
-++|... ..+|++ | ..++ +.-.| ..+++..|| .+.|++-+.=
T Consensus 162 ~llk~~~~~~~f~~~~~v~TIHNl~yQG~fp~~~~~~~~glp~~~~~~~~~e~~D~p~~~~~~nflKgGi~~ad~vtTVS 241 (517)
T TIGR02095 162 ALLKEVYRNNGFKRIKTVFTIHNLAYQGVFPAGDLFSLLGLPPELFHMEGLEFRDNPVNYGRLNFLKGGIVYADRVTTVS 241 (517)
T ss_pred HHHHHHCCCCCCCCCCEEEEEECHHHCCCCCHHHHHHHHCCCHHHCCCCCHHCCCCCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 99997405688834546787403212667887899876278866817410110568857861777767873488103786
Q ss_pred CCCHHHHHC----------------------------CCCCCEEECCCCCCCCC-------------CCCCC-HHHHHHH
Q ss_conf 774223200----------------------------25531476388211221-------------00135-5888976
Q gi|254780767|r 148 PFEKEVMQR----------------------------LGGPPTTFVGHPLSSSP-------------SILEV-YSQRNKQ 185 (383)
Q Consensus 148 pFE~~~f~k----------------------------~~~~~~~fVGHPl~d~~-------------~~~~~-~~~~~~~ 185 (383)
|= |.+ .+|+++. +=||-.|.. ...++ +....++
T Consensus 242 Pt----YA~EI~t~pe~G~gL~g~l~~~~~~~~l~GIlNGID~~-~WNP~tD~~L~~~Ys~~~~D~~~K~~ncK~aLq~~ 316 (517)
T TIGR02095 242 PT----YAREILTPPEFGCGLDGVLKARVRSGKLRGILNGIDTE-VWNPATDPYLKANYSADDLDLSGKAKNCKEALQEE 316 (517)
T ss_pred HH----HHHHHCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCC-CCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 06----89972688444524699984032057731133233434-46853254334357843215666788758999998
Q ss_pred CCCCCC-CCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCC--CHHHHHHHHH--HHCCCCCEEEEECCC
Q ss_conf 187655-65059985387430123051118999876402735126201663--3688999999--604888505520552
Q gi|254780767|r 186 RNTPSQ-WKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVS--SQENLVRCIV--SKWDISPEIIIDKEQ 260 (383)
Q Consensus 186 ~~~~~~-~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~--~~~~~~~~~~--~~~~~~~~i~~~~~~ 260 (383)
+|++.+ +..-++---||-.+ .+-.+++++++.++.++....||++..+. +.++.++... .+++.+..+.+..++
T Consensus 317 lGL~~~Y~~~Pl~~~isRL~~-QKG~Dl~~~a~~~ll~~~~~~Qlv~lG~Gdp~le~~l~~la~~~~~p~~~~~~~~yde 395 (517)
T TIGR02095 317 LGLPVDYDDVPLFGVISRLVE-QKGVDLLLAALPELLELGDFGQLVVLGTGDPELEEALRELADHERYPGKVRVIIGYDE 395 (517)
T ss_pred HCCCCCCCCCCEEEEEECCCC-CCCHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf 198878888537999822562-4427899999999971179668999704887999999999999637894899962587
Q ss_pred --CHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCH
Q ss_conf --035788763552331-----1566888762753025405774100001024676102302440784261242054898
Q gi|254780767|r 261 --KKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRS 333 (383)
Q Consensus 261 --~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~ 333 (383)
++.+++.||+-|+.| |=.=|.++-.|++-||- +|+.|.=-+. -.+-.|.=+=.+.--=|..++.++
T Consensus 396 ~LAh~iyAgaD~~lmPSrFEPCGL~Ql~amRYGt~PiVr-~tGGL~DTV~------d~~~~~~~aP~~~~tGF~F~~~~~ 468 (517)
T TIGR02095 396 ALAHRIYAGADFFLMPSRFEPCGLTQLYAMRYGTVPIVR-RTGGLADTVV------DADPENLAAPAGSGTGFLFEEYDP 468 (517)
T ss_pred HHHHHHHHCCCEEECCCCCCCCHHHHHHHHHCCCCEEEE-CCCCCCEEEE------CCCCCCCCCCCCCCCCEEECCCCH
T ss_conf 999989723776880785573125799897349953871-5889520100------387764447787765417236888
Q ss_pred HHHHHHHHHH---HC-CHHHHHHHH
Q ss_conf 9999999998---44-989999999
Q gi|254780767|r 334 EALVRWIERL---SQ-DTLQRRAML 354 (383)
Q Consensus 334 ~~i~~~~~~l---l~-d~~~r~~~~ 354 (383)
+.+..++.+= +. +++.-+++.
T Consensus 469 ~~L~~a~~rAl~lY~~~~~~w~~l~ 493 (517)
T TIGR02095 469 EALLAALSRALRLYRQDPELWKALQ 493 (517)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 9999999999998723978999999
No 86
>KOG1111 consensus
Probab=96.77 E-value=0.0063 Score=39.25 Aligned_cols=106 Identities=18% Similarity=0.282 Sum_probs=80.7
Q ss_pred CCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEE----ECCCCHHHH
Q ss_conf 5565059985387430123051118999876402735126201663368899999960488850552----055203578
Q gi|254780767|r 190 SQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEIII----DKEQKKQVF 265 (383)
Q Consensus 190 ~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~~~~l 265 (383)
++..++.+---||- =-++-...+++.+.++.+++|+.+|++..-......+++..+++..+-.+.. ..++-.++|
T Consensus 191 ~S~~i~~ivv~sRL-vyrKGiDll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl 269 (426)
T KOG1111 191 PSADIITIVVASRL-VYRKGIDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVL 269 (426)
T ss_pred CCCCEEEEEEEEEE-EECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
T ss_conf 88870699997411-11242678999999997359873699956886502199999985004805886146617888887
Q ss_pred HHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCC
Q ss_conf 8763552331-----1566888762753025405774
Q gi|254780767|r 266 MTCNAAMAAS-----GTVILELALCGIPVVSIYKSEW 297 (383)
Q Consensus 266 ~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~ 297 (383)
.+-|.-+-+| |++-+|+|-+|.| ||.-+.+.
T Consensus 270 ~~G~IFlntSlTEafc~~ivEAaScGL~-VVsTrVGG 305 (426)
T KOG1111 270 VRGDIFLNTSLTEAFCMVIVEAASCGLP-VVSTRVGG 305 (426)
T ss_pred HCCCEEECCHHHHHHHHHHHHHHHCCCE-EEEEECCC
T ss_conf 6385796207888889999998707977-99751488
No 87
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=96.74 E-value=0.04 Score=33.96 Aligned_cols=224 Identities=11% Similarity=0.037 Sum_probs=117.8
Q ss_pred HHHHCCCCCCCHHHHHCCCCC---CEEECCCCCCCCCCCCCC----HHHHHHHCCCCCCCCEEEEEECCCCCC-----HH
Q ss_conf 986401567742232002553---147638821122100135----588897618765565059985387430-----12
Q gi|254780767|r 140 INQVISILPFEKEVMQRLGGP---PTTFVGHPLSSSPSILEV----YSQRNKQRNTPSQWKKILLLPGSRAQE-----IY 207 (383)
Q Consensus 140 ~d~~~~ifpFE~~~f~k~~~~---~~~fVGHPl~d~~~~~~~----~~~~~~~~~~~~~~~~I~llPGSR~~E-----I~ 207 (383)
.|...+--|++...|++.-|+ +..=.|+|..|....... .......++++.++++|+--|-=|.++ -.
T Consensus 149 ~dy~~~~~~~~~~if~~~f~~~~~~i~~~G~Pr~D~~~~~~~~~~~~~~~~~~~~~~~~k~vIlyaPTfr~~~~~~~~~~ 228 (388)
T COG1887 149 WDYLISPNPESTAIFAEAFNIDKENILETGYPRNDKLFDEAGKTEDILLIQLALPLPQDKKVILYAPTFRDNDVLIGTQF 228 (388)
T ss_pred CCCEECCCCHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCHH
T ss_conf 03031178106689998705330004433658505654412214667887760477555776996576578855433011
Q ss_pred HHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEE-EEECCCCHHHHHHHHHHHCCCHHHHHHHHHHC
Q ss_conf 30511189998764027351262016633688999999604888505-52055203578876355233115668887627
Q gi|254780767|r 208 KILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEI-IIDKEQKKQVFMTCNAAMAASGTVILELALCG 286 (383)
Q Consensus 208 ~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~l~~sd~ai~~SGTaTLE~al~g 286 (383)
..+++-....+..... .++.+++-.-|-..+...... ...+... +....+..+++..||+.|+==-++-.|.+++.
T Consensus 229 ~~~~~~~~~~~~~l~~-~~~~ii~k~Hp~is~~~~~~~--~~~~~~~~vs~~~di~dll~~sDiLITDySSv~fdf~~l~ 305 (388)
T COG1887 229 FNLDIDIEKLKEKLGE-NEYVIIVKPHPLISDKIDKRY--ALDDFVLDVSDNADINDLLLVSDILITDYSSVIFDFMLLD 305 (388)
T ss_pred HCCHHHHHHHHHHHCC-CCEEEEEECCHHHCCCCHHHH--CCCCCEEECCCCHHHHHHHHHCCEEEECCCCHHHHHHHHC
T ss_conf 0001459999876166-876999955853404210002--0366046546634499998754888851630046688655
Q ss_pred CCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 53025405774100001024676102302440784261242054898999999999844989999999999999998389
Q gi|254780767|r 287 IPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNT 366 (383)
Q Consensus 287 ~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~ 366 (383)
.|+ +.|..+.=.|.-.+-.--+|- .+.-.|+++ |-.++.+++...+.+++.+..-...+.+..... .
T Consensus 306 KPi-ify~~D~~~y~~~rg~~~d~~--------~~~Pg~~~~---~~~~li~ai~~~~~~~~~~~~k~~~~~~~~~~~-~ 372 (388)
T COG1887 306 KPI-IFYTYDLEQYDELRGFYLDYK--------FEAPGEVVE---TQEELIDAIKPYDEDGNYDLEKLRVFNDKFNSY-E 372 (388)
T ss_pred CCE-EEEECCCHHHHHCCCHHHHHH--------HCCCCCHHC---CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC-C
T ss_conf 967-999647047554011244577--------619951103---689999987753102215688898777775123-4
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 9998999999999
Q gi|254780767|r 367 KKPAGHMAAEIVL 379 (383)
Q Consensus 367 ~~~a~~~AA~~I~ 379 (383)
.|.++++--+.+.
T Consensus 373 dg~ss~ri~~~i~ 385 (388)
T COG1887 373 DGRSSERILKLIF 385 (388)
T ss_pred CCHHHHHHHHHHH
T ss_conf 7307789999985
No 88
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II; InterPro: IPR011910 This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.; GO: 0016757 transferase activity transferring glycosyl groups, 0009103 lipopolysaccharide biosynthetic process.
Probab=96.51 E-value=0.017 Score=36.35 Aligned_cols=313 Identities=14% Similarity=0.154 Sum_probs=177.3
Q ss_pred EEEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5999976821478999-999999973899839999717899947880650444531101367466459999999999861
Q gi|254780767|r 5 KIAVIAGEISGDLLAG-DLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVEL 83 (383)
Q Consensus 5 ki~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~ 83 (383)
||+||+=-==||+-=| .|=+.||+++| ++.+.-+.=.--+-. ++.-=.+++.-.+ +++|=--=+....++-+.
T Consensus 1 kILvIGPsWVGDmvMaQ~Lf~~Lk~~yP-~~~IDV~APaW~~Pl-L~RMPEi~~~~~~----PlgHGaL~l~~R~rlg~~ 74 (361)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLFRLLKKRYP-DAVIDVLAPAWCKPL-LERMPEIRQAIDM----PLGHGALELTERYRLGKS 74 (361)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHCC-CCEEEEECCHHHHHH-HCCCCHHHHHHCC----CCCCCCCHHHHHHHHHHH
T ss_conf 9357438736555676899999998589-838972075330133-3127015787458----878762126767899999
Q ss_pred CCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC-CCCC-------------HHHHHHHHHHHCCCCCC
Q ss_conf 001288868985117765799998663013463111100221100-3663-------------55799999864015677
Q gi|254780767|r 84 IVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAW-REGR-------------ARKMCAYINQVISILPF 149 (383)
Q Consensus 84 i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAW-r~~R-------------~k~~~~~~d~~~~ifpF 149 (383)
++.++.|-+|. |=-.+|... ||..==| |+=-=| |+-| +|+.....=+-++-+=+
T Consensus 75 LR~~~YD~AiV---------LPNSlKSAL--iPfFA~I-P~RtGw~GEmRYGLLND~r~LdGkak~~~P~m~~rY~ALAy 142 (361)
T TIGR02195 75 LREERYDQAIV---------LPNSLKSAL--IPFFAGI-PLRTGWRGEMRYGLLNDIRALDGKAKERLPLMIERYIALAY 142 (361)
T ss_pred HHHCCCCEEEE---------CCCCHHHHH--HHHHCCC-CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 97558988998---------677216676--3676188-61235563235666644220677111433579999998864
Q ss_pred CHHHHHCCCCCCEEEC--CCCCCCCCCCCCCHHHHHHHCC----CCC-CCCEEEEEECCCCCCHHHHCCC--HHHHHHHH
Q ss_conf 4223200255314763--8821122100135588897618----765-5650599853874301230511--18999876
Q gi|254780767|r 150 EKEVMQRLGGPPTTFV--GHPLSSSPSILEVYSQRNKQRN----TPS-QWKKILLLPGSRAQEIYKILPF--FESAVASL 220 (383)
Q Consensus 150 E~~~f~k~~~~~~~fV--GHPl~d~~~~~~~~~~~~~~~~----~~~-~~~~I~llPGSR~~EI~~~lP~--~l~~~~~l 220 (383)
+++..++...++..|- =.|-+.- ....+.....+++ +.. ++|+|++.||+=..+-|| +|- |.+.|+++
T Consensus 143 ~K~~i~~~~~LP~sf~plp~P~L~~--~~~~~~~~~~kF~k~taL~~P~rP~ialCPGAEfGpAKR-WP~~HyA~LA~~~ 219 (361)
T TIGR02195 143 DKDVIQKGADLPESFQPLPRPQLQI--DPAEQAAALAKFGKQTALDTPERPIIALCPGAEFGPAKR-WPAEHYAELAKKL 219 (361)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEE--CHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCC-CCHHHHHHHHHHH
T ss_conf 0344677655761011377745254--788999999985122126677887687587766775567-8538999999999
Q ss_pred HHCCCCCEEEECCCCCHHHHHHH-HHHHCCCC-----CEE--EEECCCCHHHHHHHHHHHCC-CHHHHHHHHHHCCCEEE
Q ss_conf 40273512620166336889999-99604888-----505--52055203578876355233-11566888762753025
Q gi|254780767|r 221 VKRNPFFRFSLVTVSSQENLVRC-IVSKWDIS-----PEI--IIDKEQKKQVFMTCNAAMAA-SGTVILELALCGIPVVS 291 (383)
Q Consensus 221 ~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~-----~~i--~~~~~~~~~~l~~sd~ai~~-SGTaTLE~al~g~P~IV 291 (383)
.... .+++++...+..+....+ +.+..... .+. .+.-++.-++++.|.++|+= ||=.. =+|.+++|.|-
T Consensus 220 ~~~G-gy~V~lFGS~kD~~~~~~fI~~~~~~~~~~~~~NLaG~T~L~EAvdLia~a~avV~NDSGLMH-VAAAL~rPlVA 297 (361)
T TIGR02195 220 IAQG-GYQVVLFGSKKDKPVGDEFIEALAPGELREYCDNLAGETSLDEAVDLIALAKAVVSNDSGLMH-VAAALNRPLVA 297 (361)
T ss_pred HHCC-CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEECCHHHHH-HHHHCCCCEEE
T ss_conf 8706-918998428455789999999863446889974104788888999998715601215606799-99962798899
Q ss_pred ECC------CCCCEEEE--EE---CCCCCCEEEEHHHCCCCCCCH-HHC--CCCCHHHHHHHHHHHH
Q ss_conf 405------77410000--10---246761023024407842612-420--5489899999999984
Q gi|254780767|r 292 IYK------SEWIVNFF--IF---YIKTWTCALPNLIVDYPLVPE-YFN--SMIRSEALVRWIERLS 344 (383)
Q Consensus 292 ~Yk------~~~lt~~i--~~---lik~~~i~LpNii~~~~ivPE-liQ--~~~~~~~i~~~~~~ll 344 (383)
+|= |.||+..- .+ +++.....- .++.-.|+ ..| .+.+|+.+..++.+++
T Consensus 298 lYGsTsP~fTPPLs~ka~~~~Gnal~~~~cspc----~~rk~c~~Gh~~cL~~l~P~~V~~~l~~Ll 360 (361)
T TIGR02195 298 LYGSTSPDFTPPLSEKAEVVRGNALLNLECSPC----FKRKECPYGHHQCLIDLSPEQVLEALEELL 360 (361)
T ss_pred EECCCCCCCCCCHHHHCEEEECCCEECCCCCCC----CCCCCCCCCHHHHHHHCCHHHHHHHHHHHC
T ss_conf 736856888887444110013101006732454----356536511477886069889999999744
No 89
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=96.29 E-value=0.046 Score=33.55 Aligned_cols=126 Identities=14% Similarity=0.222 Sum_probs=81.6
Q ss_pred HCCCHHHHHHHHHH------CCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEE-----ECCCCHHHHHHHHHHHCC---
Q ss_conf 05111899987640------2735126201663368899999960488850552-----055203578876355233---
Q gi|254780767|r 209 ILPFFESAVASLVK------RNPFFRFSLVTVSSQENLVRCIVSKWDISPEIII-----DKEQKKQVFMTCNAAMAA--- 274 (383)
Q Consensus 209 ~lP~~l~~~~~l~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~l~~sd~ai~~--- 274 (383)
-+-++++|.+...+ ..|++.+++-.-...++...+.+++.... +|.+ ..++...++..||+.++-
T Consensus 246 DF~iLl~AL~~Yd~~~~~~~~~p~ll~iITGKGP~K~~y~~~I~~~~l~-~V~i~t~wL~~eDYP~lL~~ADLGVsLHtS 324 (415)
T cd03816 246 DFGILLDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKELKLK-KVTIRTPWLSAEDYPKLLASADLGVSLHTS 324 (415)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCC-CEEEEECCCCHHHHHHHHHCCCCCEEECCC
T ss_conf 5678999999997653214789987999968853089999999862888-219972578878899987415347242126
Q ss_pred -CHHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCC------CHHHHHHHHHHHHCC-
Q ss_conf -115668887627530254057741000010246761023024407842612420548------989999999998449-
Q gi|254780767|r 275 -SGTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMI------RSEALVRWIERLSQD- 346 (383)
Q Consensus 275 -SGTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~------~~~~i~~~~~~ll~d- 346 (383)
|| +..||=|+= .--.|||=+-.+.+.++||++++. +++++++.+..++.|
T Consensus 325 SSG--------lDLPMKVVD--------------MfG~GlPV~A~~f~~i~ELVk~~~NG~~F~~~~eL~~~l~~l~~~~ 382 (415)
T cd03816 325 SSG--------LDLPMKVVD--------------MFGCGLPVCALDFKCIDELVKHGENGLVFGDSEELAEQLIDLLSNF 382 (415)
T ss_pred CCC--------CCCCHHHHH--------------HCCCCCCEEEECCCCHHHHHCCCCCCCEECCHHHHHHHHHHHHHCC
T ss_conf 876--------677702101--------------0268875798337517877226878766578999999999998559
Q ss_pred --HHHHHHHHHHH
Q ss_conf --89999999999
Q gi|254780767|r 347 --TLQRRAMLHGF 357 (383)
Q Consensus 347 --~~~r~~~~~~~ 357 (383)
.+..+.+++++
T Consensus 383 p~~~~l~~lk~~a 395 (415)
T cd03816 383 PNRGKLNSLKKGA 395 (415)
T ss_pred CCHHHHHHHHHHH
T ss_conf 9668999999777
No 90
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=95.85 E-value=0.17 Score=29.88 Aligned_cols=195 Identities=16% Similarity=0.164 Sum_probs=97.9
Q ss_pred CCCEEEE------ECHHHH-----HHHHHHHHHHHCCCCCCEEE---ECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 8886898------511776-----57999986630134631111---002211003663557999998640156774223
Q gi|254780767|r 88 KPDVLLI------VDNPDF-----THRVAKRVRKKMPNLPIINY---VCPSVWAWREGRARKMCAYINQVISILPFEKEV 153 (383)
Q Consensus 88 ~Pd~vi~------iD~pgF-----nl~lak~lkk~~~~ipvi~y---v~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~ 153 (383)
+-|++|. -|..++ -+.+...+|. .|.|++.| |.|--=-|.++-++.+-+.+|.+.+==+.-.++
T Consensus 64 ~~d~~I~GGG~llqD~ts~~s~~yy~~~~~la~~--~gkpv~~~gqgiGP~~~~~~r~l~r~~l~~~~~i~vRD~~S~~~ 141 (298)
T TIGR03609 64 RADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARL--FGKPVILWGQGIGPLRRRLSRWLVRRVLRGCRAISVRDAASYRL 141 (298)
T ss_pred HCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCEEEECCHHHHHH
T ss_conf 7799998585414588754347899999999998--29988999426887678789999999984199999778888999
Q ss_pred HHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECC
Q ss_conf 20025531476388211221001355888976187655650599853874301230511189998764027351262016
Q gi|254780767|r 154 MQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVT 233 (383)
Q Consensus 154 f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~ 233 (383)
.++. |+++...+-|........ . ......+++.|++-+=+-..-=......+.+++..+.++.......+|.
T Consensus 142 l~~l-Gv~~~l~~D~af~l~~~~--~-----~~~~~~~~~~i~v~~r~~~~~~~~~~~~~~~~l~~l~~~~g~~V~~lp~ 213 (298)
T TIGR03609 142 LKRL-GIPAELAADPVWLLPPEP--W-----PGGEPLPEPVIVVSLRPWPLLDVSRLLRLLRALDRLQRDTGAFVLFLPF 213 (298)
T ss_pred HHHC-CCCEEEECCEEECCCCCC--C-----CCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 9974-998489677132057755--4-----4444567998999978888789999999999999999835986999968
Q ss_pred CCC-HHHHHHHHHHHCCCCCEEEEE--CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEE
Q ss_conf 633-688999999604888505520--55203578876355233115668887627530254
Q gi|254780767|r 234 VSS-QENLVRCIVSKWDISPEIIID--KEQKKQVFMTCNAAMAASGTVILELALCGIPVVSI 292 (383)
Q Consensus 234 ~~~-~~~~~~~~~~~~~~~~~i~~~--~~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~ 292 (383)
..+ .....+...........+... ..+....++.||++|++-=-+..-+++.|+|+|.+
T Consensus 214 ~~~~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~RlH~~I~A~~~gvP~i~i 275 (298)
T TIGR03609 214 QQPQDLPLARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMRLHALILAAAAGVPFVAL 275 (298)
T ss_pred CCCCHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHCCEEEEECCHHHHHHHHCCCCEEEE
T ss_conf 87854999999997578863653789999999999609989980708999999779998995
No 91
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA , . The protein from rat liver displays both epimerase and kinase activity .; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process.
Probab=95.71 E-value=0.19 Score=29.52 Aligned_cols=347 Identities=14% Similarity=0.072 Sum_probs=190.5
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC-CHHHHHCCCEEEEC---HH-HCCEEEHHHHH-HHHHHHHHHH
Q ss_conf 4599997682147899999999997389983999971-78999478806504---44-53110136746-6459999999
Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG-GPSLQKEGLVSLFD---FS-ELSVIGIMQVV-RHLPQFIFRI 77 (383)
Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG-G~~m~~~G~~~~~~---~~-~l~v~G~~evl-~~~~~~~~~~ 77 (383)
||+.++-|-..--+--+.+++++++. |++++.-+- |.+-...-.+..++ +. .-.-+++...= .+-...-+..
T Consensus 1 ~~~~~~~g~~p~~~~~~p~~~~~~~~--p~~~~~~~~~~~h~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~l 78 (380)
T TIGR00236 1 LKVLIVLGTRPEAIKLAPLIRALLKD--PGIDWKVLHTGQHRDEEMLDQVLDLFSLPNPDYDLNIGSPGQTLGEITGGLL 78 (380)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHC--CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 91255406762035665789998626--8852256750320014678999988622575444423576630477888888
Q ss_pred HHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECC--CCCCCCCCCHHHHHHHHHHHCCC--CCCCHH-
Q ss_conf 9998610012888689851177657999986630134631111002--21100366355799999864015--677422-
Q gi|254780767|r 78 NQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCP--SVWAWREGRARKMCAYINQVISI--LPFEKE- 152 (383)
Q Consensus 78 ~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~P--qvWAWr~~R~k~~~~~~d~~~~i--fpFE~~- 152 (383)
..+.+.+.+.+||+++.- .+-|--+|..+-.-...+|+-|.-+- +.-.+.++--..-+...+++..+ -|-|..
T Consensus 79 ~~~~~~~~~~~p~~~~~~--gd~~~~~~~~l~~~~~~~~~gh~~~gl~~~~~~~p~p~~~~~~~~~~~~~~~~~p~~~~~ 156 (380)
T TIGR00236 79 EGLEELLLEEKPDVVLVQ--GDTTTTLAGALAAFYLQIPVGHVEAGLRTGDLYSPFPEELNRVLTGHIAKLHFAPTELAK 156 (380)
T ss_pred HHHHHHHHHCCCCEEEEE--CCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 767888641488678971--662146777887776530101332011124455776056777898877764203215667
Q ss_pred --HH-HCCCCCCEEECCCCCCCCCCCCCCHH-HHHHHCCCCC------CCCEEEEEECCCCCCHH--HHCCCHHHHHHHH
Q ss_conf --32-00255314763882112210013558-8897618765------56505998538743012--3051118999876
Q gi|254780767|r 153 --VM-QRLGGPPTTFVGHPLSSSPSILEVYS-QRNKQRNTPS------QWKKILLLPGSRAQEIY--KILPFFESAVASL 220 (383)
Q Consensus 153 --~f-~k~~~~~~~fVGHPl~d~~~~~~~~~-~~~~~~~~~~------~~~~I~llPGSR~~EI~--~~lP~~l~~~~~l 220 (383)
.. +....-....+||-..|......... ......+... .+..+.++-+.|...+. .-+.-+++++..+
T Consensus 157 ~~l~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~ 236 (380)
T TIGR00236 157 ENLLREGVEPGKIFVTGNTVIDALLTNLEIAEPSSPVLSEFGENYPFVPDDRVLLLTLHRRENVGNPEPLENILEAILEI 236 (380)
T ss_pred HHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCEEEEEEHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 77763055545057622056777877665421015502342256773204544465400110467601468999999998
Q ss_pred HHCCCCCEEEECCCCCHHHHHH--HHHHHCCCCCEEEEEC----CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECC
Q ss_conf 4027351262016633688999--9996048885055205----520357887635523311566888762753025405
Q gi|254780767|r 221 VKRNPFFRFSLVTVSSQENLVR--CIVSKWDISPEIIIDK----EQKKQVFMTCNAAMAASGTVILELALCGIPVVSIYK 294 (383)
Q Consensus 221 ~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~i~~~~----~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~Yk 294 (383)
...+++...+.|.-+....... ......+...++.+.. -+....+..|.+.++-||-..-|+..+|.|.++.-.
T Consensus 237 ~~~~~~~~~~~p~h~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~d~gg~~~~~~~~~~p~~~~~~ 316 (380)
T TIGR00236 237 LEEFPDVAIVFPVHPNPKVREPEFGLYKALGDAKRVFLIEPLGYLDFLLLLSNAYLILTDSGGLQEEAPSLGKPVLVLRD 316 (380)
T ss_pred HHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCEEEEECCCCCCHHHHHCCCCEEEEEC
T ss_conf 74124303566214564210023104666325663577551347888887532416873477630011212774377503
Q ss_pred CCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 77410000102467610230244078426124205489899999999984498999999999999999838999989999
Q gi|254780767|r 295 SEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMA 374 (383)
Q Consensus 295 ~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~A 374 (383)
+.---..+ -+|... ++ -.+.+++......+++|++.++++.+. ..-.|... ++++.
T Consensus 317 ~~~~p~~~--------------~~g~~~---l~--g~~~~~~~~~~~~~l~~p~~~~~~~~~----~~p~g~g~-~~~~~ 372 (380)
T TIGR00236 317 TTERPEAV--------------EAGTNK---LV--GTDKEKITKAAGRLLSDPDEYRKMSNA----ENPYGDGE-ASERI 372 (380)
T ss_pred CCCCCCHH--------------HCCCEE---EE--CCCHHHHHHHHHHHHCCHHHHHHHHHH----CCCCCCCH-HHHHH
T ss_conf 56664201--------------003200---10--466788999999873172678888641----26567741-46899
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780767|r 375 AEIV 378 (383)
Q Consensus 375 A~~I 378 (383)
.+.+
T Consensus 373 ~~~~ 376 (380)
T TIGR00236 373 VEEL 376 (380)
T ss_pred HHHH
T ss_conf 9998
No 92
>KOG0853 consensus
Probab=95.37 E-value=0.25 Score=28.74 Aligned_cols=154 Identities=13% Similarity=0.132 Sum_probs=84.3
Q ss_pred CCCHHHHHHHHHHCC-----CCCEEEECC-------CCC---HHHHHHHHHHHCCCCCEE-EE----ECCCCHHHHHHHH
Q ss_conf 511189998764027-----351262016-------633---688999999604888505-52----0552035788763
Q gi|254780767|r 210 LPFFESAVASLVKRN-----PFFRFSLVT-------VSS---QENLVRCIVSKWDISPEI-II----DKEQKKQVFMTCN 269 (383)
Q Consensus 210 lP~~l~~~~~l~~~~-----~~~~~~i~~-------~~~---~~~~~~~~~~~~~~~~~i-~~----~~~~~~~~l~~sd 269 (383)
..+++.+..++.+.- ++.+..+.. .++ ....+...+.++++..+. .. .....+.+.+.+.
T Consensus 288 ~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~f~~s~~~~~~yrl~adt~ 367 (495)
T KOG0853 288 QDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTK 367 (495)
T ss_pred CEEEHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCC
T ss_conf 46644447764003578887711699943787644553558999999999997276665699845776388899987443
Q ss_pred HHHCC-----CHHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHH
Q ss_conf 55233-----1156688876275302540577410000102467610230244078426124205489899999999984
Q gi|254780767|r 270 AAMAA-----SGTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLS 344 (383)
Q Consensus 270 ~ai~~-----SGTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll 344 (383)
.++.+ -|-+++|++.+|+|++.+-.-++.. .+. |-..|--+=| ++--+..+++.+.++.
T Consensus 368 ~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~E-iV~-----------~~~tG~l~dp----~~e~~~~~a~~~~kl~ 431 (495)
T KOG0853 368 GVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAE-IVV-----------HGVTGLLIDP----GQEAVAELADALLKLR 431 (495)
T ss_pred EEEECCCCCCCCCEEHHHHHCCCCEEEECCCCCEE-EEE-----------CCCCCEEECC----CHHHHHHHHHHHHHHH
T ss_conf 57726888775633398785599889966999657-898-----------4885044577----4577899999999981
Q ss_pred CCHHHHHHHH-HHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 4989999999-99999999838999989999999998
Q gi|254780767|r 345 QDTLQRRAML-HGFENLWDRMNTKKPAGHMAAEIVLQ 380 (383)
Q Consensus 345 ~d~~~r~~~~-~~~~~~~~~Lg~~~~a~~~AA~~I~~ 380 (383)
.|++.+.+|- ++++.+.++... ..-+++.+..+.+
T Consensus 432 ~~p~l~~~~~~~G~krV~e~fs~-~~~~~ri~~~~~~ 467 (495)
T KOG0853 432 RDPELWARMGKNGLKRVKEMFSW-QHYSERIASVLGK 467 (495)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_conf 39899999988788999998707-7799999998775
No 93
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=95.34 E-value=0.1 Score=31.23 Aligned_cols=184 Identities=15% Similarity=0.139 Sum_probs=98.2
Q ss_pred CCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC------CCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCE
Q ss_conf 88689851177657999986630134631111002211003------663557999998640156774223200255314
Q gi|254780767|r 89 PDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWR------EGRARKMCAYINQVISILPFEKEVMQRLGGPPT 162 (383)
Q Consensus 89 Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr------~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~~~ 162 (383)
.+.++....| +...+...++ +..+||++.=-.=||. ...-+.+.+-.|.+++.=+-=.+-+++. +-++
T Consensus 102 ~~~ilw~~~P-~~~~~~~~l~----~~~vVYdcvDd~~~~~~~~~~~~~~e~~l~~~ad~v~~ts~~L~~~~~~~-~~~~ 175 (373)
T cd04950 102 GRPILWYYTP-YTLPVAALLQ----ASLVVYDCVDDLSAFPGGPPELLEAERRLLKRADLVFTTSPSLYEAKRRL-NPNV 175 (373)
T ss_pred CCEEEEECCC-CHHHHHHHCC----CCCEEEEEECCHHHCCCCCHHHHHHHHHHHHHCCEEEECCHHHHHHHHHC-CCCE
T ss_conf 9739998173-0688987537----88389995061221379868999999999997799998599999988746-9998
Q ss_pred EECCCCCCCC--CCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHH
Q ss_conf 7638821122--10013558889761876556505998538743012305111899987640273512620166336889
Q gi|254780767|r 163 TFVGHPLSSS--PSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENL 240 (383)
Q Consensus 163 ~fVGHPl~d~--~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~ 240 (383)
++++|=. |. +........ .........+++|+....- .. . +=.+.+..+.+.+|+..|++...... ..
T Consensus 176 ~~i~nGv-D~~~F~~~~~~~~-~~~~~~~~~~p~igy~G~i-~~--~----~D~~ll~~~a~~~p~~~~~liGp~~~-~~ 245 (373)
T cd04950 176 VLVPNGV-DYEHFAAARDPPP-PPADLAALPRPVIGYYGAI-AE--W----LDLELLEALAKARPDWSFVLIGPVDV-SI 245 (373)
T ss_pred EEECCEE-CHHHHHHHCCCCC-CCHHHCCCCCCEEEEEECC-CC--C----CCHHHHHHHHHHCCCCEEEEEECCCC-CC
T ss_conf 9988821-7888410015768-8045504799889999257-52--1----48999999999889968999943887-55
Q ss_pred HHHHHHHCCCCCEEEEEC----CCCHHHHHHHHHHHCC----------CHHHHHHHHHHCCCEEEE
Q ss_conf 999996048885055205----5203578876355233----------115668887627530254
Q gi|254780767|r 241 VRCIVSKWDISPEIIIDK----EQKKQVFMTCNAAMAA----------SGTVILELALCGIPVVSI 292 (383)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~----~~~~~~l~~sd~ai~~----------SGTaTLE~al~g~P~IV~ 292 (383)
....+... .+|.... ++....++++|+++.. |-.=..|.+++|+| ||.
T Consensus 246 ~~~~l~~~---~Nv~~lG~~~~~~lp~~l~~~Dv~l~P~~~~~~t~~~~P~Kl~EYlA~G~P-VVs 307 (373)
T cd04950 246 DPSALLRL---PNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKP-VVA 307 (373)
T ss_pred CHHHHHCC---CCEEECCCCCHHHHHHHHHHCCEEEEECCCCHHHHCCCCCHHHHHHHCCCC-EEE
T ss_conf 83456259---987984898999999999857877741205545424686379999866998-896
No 94
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=94.53 E-value=0.42 Score=27.26 Aligned_cols=269 Identities=16% Similarity=0.227 Sum_probs=117.3
Q ss_pred CEEEEEEC---CCCH-HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEE-ECHHHCCE----EE-HHHHHHHHHHH
Q ss_conf 45999976---8214-7899999999997389983999971789994788065-04445311----01-36746645999
Q gi|254780767|r 4 LKIAVIAG---EISG-DLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSL-FDFSELSV----IG-IMQVVRHLPQF 73 (383)
Q Consensus 4 mki~i~aG---E~SG-D~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~-~~~~~l~v----~G-~~evl~~~~~~ 73 (383)
||++++-. +-.| +..-..+.+.|++. .|++++.-||-.- ....+.. ...+.... .| .-.+++...+-
T Consensus 1 m~~~L~g~~g~gN~Gdeail~all~~l~~~-~~~~~~~~~~~~p--~~i~~p~~~~~~p~~~~~~l~g~~k~v~R~~~k~ 77 (385)
T COG2327 1 MKALLLGYYGFGNIGDEAILKALLDMLRRL-NPDAKVLVMGRRP--PVIVDPVFLSANPEGSAAGLNGRVKSVLRRRLKH 77 (385)
T ss_pred CEEEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCCEEEEECCC--CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 926888300478764599999999999853-8664435650478--6001313552786667203438899999975515
Q ss_pred HHHHHHHHHHCCCCCCCEEEEE------C---------HHHHHHHHHHHHHHHCCCCCCEEE---ECCCCCCCCCCCHHH
Q ss_conf 9999999861001288868985------1---------177657999986630134631111---002211003663557
Q gi|254780767|r 74 IFRINQTVELIVSSKPDVLLIV------D---------NPDFTHRVAKRVRKKMPNLPIINY---VCPSVWAWREGRARK 135 (383)
Q Consensus 74 ~~~~~~~~~~i~~~~Pd~vi~i------D---------~pgFnl~lak~lkk~~~~ipvi~y---v~PqvWAWr~~R~k~ 135 (383)
..+..+...+ .+.|++|-. | |-|+ +.+|..+ +.|++.| +.|-. ..--++
T Consensus 78 -~~~~~il~~l--~~~d~~I~~Gg~l~~d~~~~~~~~~~~~~-~~la~l~-----~kp~~~~g~svGP~~----~~~s~~ 144 (385)
T COG2327 78 -PGLVSILSAL--GKADLIIIGGGGLLQDVTSSRSIIYYGGS-ILLARLA-----GKPTFFFGQSVGPLK----HPLSRQ 144 (385)
T ss_pred -CCHHHHHHHH--HHCCEEEECCCCCCCCCCCCCEEHHHHHH-HHHHHHC-----CCCEEEEECCCCCCC----CHHHHH
T ss_conf -3089999985--01788998485301576566121106889-9999975-----998799955678766----777999
Q ss_pred HHHHHHHHCC----CCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEE-EECCCC-CCHHH-
Q ss_conf 9999986401----5677422320025531476388211221001355888976187655650599-853874-30123-
Q gi|254780767|r 136 MCAYINQVIS----ILPFEKEVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILL-LPGSRA-QEIYK- 208 (383)
Q Consensus 136 ~~~~~d~~~~----ifpFE~~~f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~l-lPGSR~-~EI~~- 208 (383)
+..++-...+ ==|+-.++.+. -|+++..+.-|-........+.... ......+.+++ +=|=+. .+-.+
T Consensus 145 ~~~~~~~~~s~i~vRD~~S~~llk~-~gi~a~l~~D~Af~L~~~~~~~~~~----~~~~~~~~~~i~lr~~~~~~t~~~~ 219 (385)
T COG2327 145 LLNYVLGGCSAISVRDPVSYELLKQ-LGINARLVTDPAFLLPASSQNATAS----DVEAREKTVAITLRGLHPDNTAQRS 219 (385)
T ss_pred HHHHHHCCCCEEEEECHHHHHHHHH-CCCCEEEECCCCEECCCCCCCCCCC----CCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 9998856774899836875999998-0998376058402234544465521----1003455379994146775156678
Q ss_pred HCCCHHHHHHHH-HHCCCCCEEEECCC--CCHHHHHHHHHHHCCCCCEEEEECCCC----HHHHHHHHHHHCCCHHHHHH
Q ss_conf 051118999876-40273512620166--336889999996048885055205520----35788763552331156688
Q gi|254780767|r 209 ILPFFESAVASL-VKRNPFFRFSLVTV--SSQENLVRCIVSKWDISPEIIIDKEQK----KQVFMTCNAAMAASGTVILE 281 (383)
Q Consensus 209 ~lP~~l~~~~~l-~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~l~~sd~ai~~SGTaTLE 281 (383)
.+-...++++.. .+............ .+.......+........++....+.. -..+.+||++|+.==-.+.=
T Consensus 220 ~~~~~~~~l~~~~~~~~~~~~i~~~~~~~s~d~~va~~i~~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~HsaI~ 299 (385)
T COG2327 220 ILKYVNEALDLVERQVKALWRITLIDYGASDDLAVADAIAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMRLHSAIM 299 (385)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHCCCCEEEEEHHHHHHH
T ss_conf 99989999999998641044887320455421678999876438720068614327889887751574598621689999
Q ss_pred HHHHCCCEEEEC
Q ss_conf 876275302540
Q gi|254780767|r 282 LALCGIPVVSIY 293 (383)
Q Consensus 282 ~al~g~P~IV~Y 293 (383)
++..|+|.|-++
T Consensus 300 al~~g~p~i~i~ 311 (385)
T COG2327 300 ALAFGVPAIAIA 311 (385)
T ss_pred HHHCCCCEEEEE
T ss_conf 986599758986
No 95
>PRK10017 putative pyruvyl transferase; Provisional
Probab=94.37 E-value=0.45 Score=27.03 Aligned_cols=324 Identities=11% Similarity=0.106 Sum_probs=146.4
Q ss_pred CEEEEEE----CCCCHHHHHHHHHHHHHHHCCCCEEEEEECC-HHHHH--CCCEEEEC-----HHHCC-EEEHHH----H
Q ss_conf 4599997----6821478999999999973899839999717-89994--78806504-----44531-101367----4
Q gi|254780767|r 4 LKIAVIA----GEISGDLLAGDLIKSLKEMVSYPINLVGVGG-PSLQK--EGLVSLFD-----FSELS-VIGIMQ----V 66 (383)
Q Consensus 4 mki~i~a----GE~SGD~~~a~li~~Lk~~~~~~~~~~giGG-~~m~~--~G~~~~~~-----~~~l~-v~G~~e----v 66 (383)
|||.|+. |-..-+-.-..+++.|++. .|++++.=+.. |.-.+ .+.+...| +...+ .-|+.. +
T Consensus 1 MkIvI~G~yg~~N~GDeAIL~siI~~Lr~~-~p~~~I~VlS~~P~~t~~~~~~~~~~d~~~~~~~~~~~~~~~~~r~~~~ 79 (426)
T PRK10017 1 MKLLILGNHTCGNRGDSAILRGLLDAINIL-NPHAEVDVMSRYPVSSSWLLNRPVMGDPLFLQMKQHNSAAGVVGRVKKV 79 (426)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCCHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 979998360798742799999999999975-8999689995897511332166423532666665412332024567889
Q ss_pred HHHHH------------------HHHHHHHHHHHHCCCCCCCEEEEE------C-H--HHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 66459------------------999999999861001288868985------1-1--7765799998663013463111
Q gi|254780767|r 67 VRHLP------------------QFIFRINQTVELIVSSKPDVLLIV------D-N--PDFTHRVAKRVRKKMPNLPIIN 119 (383)
Q Consensus 67 l~~~~------------------~~~~~~~~~~~~i~~~~Pd~vi~i------D-~--pgFnl~lak~lkk~~~~ipvi~ 119 (383)
+++.. .+.+.+.+..+.++ +-|++|.+ | | +.|..-+...+. +.|++.
T Consensus 80 i~~~~~~~i~~~~v~~~g~l~~~~~~~~~~~~~~~L~--~~D~vIs~GGs~~~D~yg~~~~~~~L~a~l~----kKpv~~ 153 (426)
T PRK10017 80 LRRRYQHQVLLSRVTDTGKLRNIAIAQGFTDFVRLLS--GYDAIIQVGGSFFVDLYGVPQFEHALCTFMA----KKPLFM 153 (426)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH--HCCEEEEECCCCCCCCCCCCHHHHHHHHHHC----CCCEEE
T ss_conf 9875314667766325641100022244579999986--5478997177620147685216899999973----996899
Q ss_pred E---ECCCCCCCCCCCHHHHHHHHHHHCCCCCCCH---HHHHCCCCCC---EEECCCCCCCCCCCCC---CHHHHHHHCC
Q ss_conf 1---0022110036635579999986401567742---2320025531---4763882112210013---5588897618
Q gi|254780767|r 120 Y---VCPSVWAWREGRARKMCAYINQVISILPFEK---EVMQRLGGPP---TTFVGHPLSSSPSILE---VYSQRNKQRN 187 (383)
Q Consensus 120 y---v~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~---~~f~k~~~~~---~~fVGHPl~d~~~~~~---~~~~~~~~~~ 187 (383)
| |.|=-=.|..+ .++..+.+.-.|+-=|. ++.++. |++ ++.+--|-+-...... ......+-++
T Consensus 154 ~aQgIGP~~~~~~~~---l~~~vl~~~d~ItvRD~~S~~~L~~l-Gv~~~~i~~taDpAF~l~~~~~~~~~~~~~~~~l~ 229 (426)
T PRK10017 154 IGHSVGPFQDEQFNQ---LANYVFGHCDALILRESVSLDLMKRS-NITTAKVEHGVDTAWLVDHHTEDFTASYAVQHWLD 229 (426)
T ss_pred EECCCCCCCCHHHHH---HHHHHHHCCCEEEECCHHHHHHHHHC-CCCCCCEEEECCCCEECCCCCCCCCCCHHHHHHCC
T ss_conf 904468808788999---99999841978997658789999985-99978628945821102565433221235564136
Q ss_pred CCCCCCEEEEEE----CC--CCC-CHHHHCCCHHHHHHHHHHCCCCCEEEECCC--C--CHHHH--HHHHHHHCCCCCEE
Q ss_conf 765565059985----38--743-012305111899987640273512620166--3--36889--99999604888505
Q gi|254780767|r 188 TPSQWKKILLLP----GS--RAQ-EIYKILPFFESAVASLVKRNPFFRFSLVTV--S--SQENL--VRCIVSKWDISPEI 254 (383)
Q Consensus 188 ~~~~~~~I~llP----GS--R~~-EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~--~--~~~~~--~~~~~~~~~~~~~i 254 (383)
....+++|++-- +. |.. .-...-..+.++++.+.++.....|+-++. + +.++. .....+....+..+
T Consensus 230 ~~~~~~~VgisVr~~~~~~~~~~~~~~~y~~a~a~~~d~l~~~G~~Vv~lp~~~~i~~~~~dD~~~~~~i~~~m~~~~~~ 309 (426)
T PRK10017 230 VAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRILDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHISDPARY 309 (426)
T ss_pred CCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 56668779999703663011244108999999999999999779879996056687777802599999999972687636
Q ss_pred EEECC-----CCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEE-CCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHC
Q ss_conf 52055-----203578876355233115668887627530254-057741000010246761023024407842612420
Q gi|254780767|r 255 IIDKE-----QKKQVFMTCNAAMAASGTVILELALCGIPVVSI-YKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFN 328 (383)
Q Consensus 255 ~~~~~-----~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~-Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ 328 (383)
.+..+ +...+++.||+.|.+==-++-=++..|+|+|.+ |- .-...+ . .-+|||+...+ +
T Consensus 310 ~il~~~~~~~E~~~ii~~~dl~IG~RLHslIfA~~~gvP~i~IsYd-~K~~g~----~--~~lGl~~~~~d-------i- 374 (426)
T PRK10017 310 HVVMDELNDLEMGKILGACELTVGTRLHSAIISMNFATPAIAINYE-HKSAGI----M--QQLGLPEMAID-------I- 374 (426)
T ss_pred EEECCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCEEEEEEC-HHHHHH----H--HHCCCCHHEEC-------H-
T ss_conf 9838999989999999739229988899999999759996984022-878999----9--97599300303-------7-
Q ss_pred CCCCHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 5489899999999984498999999
Q gi|254780767|r 329 SMIRSEALVRWIERLSQDTLQRRAM 353 (383)
Q Consensus 329 ~~~~~~~i~~~~~~ll~d~~~r~~~ 353 (383)
+..+++.|...+...+.|-+..++.
T Consensus 375 ~~~~~~~l~~~~~~~~~~~~~~~~~ 399 (426)
T PRK10017 375 RHLLDGSLQAMVADTLGQLPALNAR 399 (426)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 7669278999999999769999999
No 96
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=94.16 E-value=0.5 Score=26.76 Aligned_cols=81 Identities=20% Similarity=0.372 Sum_probs=55.2
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH
Q ss_conf 98745999976821478999999999973899839999717899947880650444531101367466459999999999
Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383)
Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383)
|+++||+++--|+. .+..+...|+.. ++++.+.... .+.
T Consensus 1 M~~~kILiVEDd~~---l~~~l~~~L~~~---g~~v~~~~~~-----------------------------------~~a 39 (229)
T PRK11083 1 MQQPTILLVEDEQA---IADTLVYALQSE---GFTVEWFERG-----------------------------------LPA 39 (229)
T ss_pred CCCCEEEEEECCHH---HHHHHHHHHHHC---CCEEEEECCH-----------------------------------HHH
T ss_conf 99999999969999---999999999988---9999998999-----------------------------------999
Q ss_pred HHHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEEC
Q ss_conf 86100128886898-5117765-799998663013463111100
Q gi|254780767|r 81 VELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYVC 122 (383)
Q Consensus 81 ~~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv~ 122 (383)
.+.+..++||+||+ +.-||.| +-+++.+|+...++|+|..-+
T Consensus 40 l~~~~~~~~DlvilDi~LP~~~G~~l~~~iR~~~~~~pII~lta 83 (229)
T PRK11083 40 LDKLRQQPPDLVILDVGLPDISGFELCRQLRAFHPALPVIFLTA 83 (229)
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99997189989997388999876889999997089972999836
No 97
>PHA01630 putative group 1 glycosyl transferase
Probab=94.05 E-value=0.52 Score=26.61 Aligned_cols=147 Identities=14% Similarity=0.173 Sum_probs=89.2
Q ss_pred HHHHHHCCCCCCCHHHHHCCCCC----CEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCH
Q ss_conf 99986401567742232002553----14763882112210013558889761876556505998538743012305111
Q gi|254780767|r 138 AYINQVISILPFEKEVMQRLGGP----PTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFF 213 (383)
Q Consensus 138 ~~~d~~~~ifpFE~~~f~k~~~~----~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~ 213 (383)
+.+|.+.+---.-++.|.+. |+ ++.-|-|++-...-.... ...+-.-+++++|-|-. ++.-.++
T Consensus 95 ~~~D~ivv~SqWS~naf~~s-gl~I~~PiY~IpHn~nprm~~~~~--------kek~~~~Vl~~l~HS~~---RKG~Di~ 162 (333)
T PHA01630 95 QPVDEIVVPSQWSKNAFYTS-GLKIPQPIYVIPHNLNPRMFEYKP--------KEKPHPCVLAILPHSWD---RKGGDIV 162 (333)
T ss_pred CCCCEEEECCHHHHHHHHHC-CCCCCCCEEECCCCCCHHHHHCCH--------HHCCCCEEEEECCCCCC---CCCCHHH
T ss_conf 87540674244436578752-899998627645679935640763--------21887569998566545---4656889
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCC-CEEEEECCCCHHHHHHHHHHHCCC--H---HHHHHHHHHCC
Q ss_conf 89998764027351262016633688999999604888-505520552035788763552331--1---56688876275
Q gi|254780767|r 214 ESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDIS-PEIIIDKEQKKQVFMTCNAAMAAS--G---TVILELALCGI 287 (383)
Q Consensus 214 l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~l~~sd~ai~~S--G---TaTLE~al~g~ 287 (383)
..+++++++..-++-|.+-...-.+..+. +++ ...-+..++.++.++.||+-+-.| | -..+|+-.+|+
T Consensus 163 ~~v~~elqke~~d~Y~Lvkssn~~d~Rl~------~l~gvk~plp~dd~~~lf~~~Di~f~p~RGGaFEi~~iEAl~~gl 236 (333)
T PHA01630 163 VKIFHELQNEGYDFYFLIKSSNMLDPRLF------GLNGVKTPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGL 236 (333)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCEEE------CCCCCCCCCCCHHHHHHHHHCCEEEEECCCCEEECCHHHHHHCCC
T ss_conf 99999998457856999984155673021------233544789816789987406379984158603431799987079
Q ss_pred CEEEECCCCCCEEEE
Q ss_conf 302540577410000
Q gi|254780767|r 288 PVVSIYKSEWIVNFF 302 (383)
Q Consensus 288 P~IV~Yk~~~lt~~i 302 (383)
|.|+.=+-.|-.|+.
T Consensus 237 ~~v~te~GaWsE~~~ 251 (333)
T PHA01630 237 DVVVTEKGAWSEWVL 251 (333)
T ss_pred CEEECCCCCHHHHCC
T ss_conf 767627864065247
No 98
>PHA01633 putative glycosyl transferase group 1
Probab=93.71 E-value=0.36 Score=27.65 Aligned_cols=148 Identities=16% Similarity=0.171 Sum_probs=82.2
Q ss_pred CCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCC----CEEEECCCCCHHHHHHHHHHHCCCCCEEEEE-------C
Q ss_conf 5565059985387430123051118999876402735----1262016633688999999604888505520-------5
Q gi|254780767|r 190 SQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPF----FRFSLVTVSSQENLVRCIVSKWDISPEIIID-------K 258 (383)
Q Consensus 190 ~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~-------~ 258 (383)
++..-.++.-|-.+ ++++.+|+++...|..++|+ +.|.+.. .++. .+...+.++... +
T Consensus 146 pdt~kfgvvsg~tk---rknidl~lq~~n~lntkypd~ak~ihffvis---hedf-----~k~evpanvhfva~fg~q~~ 214 (335)
T PHA01633 146 PDTIKFGIVSGLTK---RKNMDLMLQVFNELNTKYPDIAKKIHFFVIS---HKQF-----TQLEVPANVHFVAEFGHNSR 214 (335)
T ss_pred CCCEEEEEEECCCC---CCCHHHHHHHHHHHHCCCCCHHHCEEEEEEE---HHHH-----HHCCCCCCEEEHHHHCCCCH
T ss_conf 86445546644432---3445699999988630188766714799962---6776-----54248740310676477848
Q ss_pred CCCHHHHHHHHHHHCCCHH-----HHHHHHHHCCCEEEECCCCCCEE---EEE-ECCCCCCEEEEHHHCCCCCCCHHHCC
Q ss_conf 5203578876355233115-----66888762753025405774100---001-02467610230244078426124205
Q gi|254780767|r 259 EQKKQVFMTCNAAMAASGT-----VILELALCGIPVVSIYKSEWIVN---FFI-FYIKTWTCALPNLIVDYPLVPEYFNS 329 (383)
Q Consensus 259 ~~~~~~l~~sd~ai~~SGT-----aTLE~al~g~P~IV~Yk~~~lt~---~i~-~lik~~~i~LpNii~~~~ivPEliQ~ 329 (383)
++....+.+.|+.++.||| -.||.+.+|+|.|- --..+++. |-. .+++...+ -| -.+++--.-.--.
T Consensus 215 e~i~afy~amdf~~vpsg~egfglpvlesmamgtpvih-q~ipp~~eftswq~n~l~k~~kv--ee-y~~kehaqkwki~ 290 (335)
T PHA01633 215 EYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIH-QLMPPLDEFTSWQWNLLIKSSKV--EE-YYDKEHGQKWKIH 290 (335)
T ss_pred HHHHHHHHHCEEEECCCCCCCCCCHHHHHHHCCCHHHH-HCCCCCHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHEEEE
T ss_conf 99999860030687358866458267877603763376-40798003203422542103078--88-7756654310567
Q ss_pred CCCHHHHHHHHHH--HHCCHHHHHH
Q ss_conf 4898999999999--8449899999
Q gi|254780767|r 330 MIRSEALVRWIER--LSQDTLQRRA 352 (383)
Q Consensus 330 ~~~~~~i~~~~~~--ll~d~~~r~~ 352 (383)
+++++.++.++.. ..+|.+.|..
T Consensus 291 rfq~ed~a~ail~a~~~qdreers~ 315 (335)
T PHA01633 291 KFQIEDMANAIILAFELQDREERSM 315 (335)
T ss_pred ECCHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 2488899999999876035788889
No 99
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=93.01 E-value=0.49 Score=26.78 Aligned_cols=15 Identities=27% Similarity=0.590 Sum_probs=6.3
Q ss_pred EEEEEEC-CHHHHHCC
Q ss_conf 3999971-78999478
Q gi|254780767|r 34 INLVGVG-GPSLQKEG 48 (383)
Q Consensus 34 ~~~~giG-G~~m~~~G 48 (383)
-|+.|+| +.-|.+.|
T Consensus 109 ~EL~~~GAnQaI~Q~~ 124 (566)
T COG1165 109 PELRGCGANQAIDQTG 124 (566)
T ss_pred HHHHCCCCCHHHHHHH
T ss_conf 7885479850212320
No 100
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=92.15 E-value=0.99 Score=24.76 Aligned_cols=151 Identities=21% Similarity=0.223 Sum_probs=85.8
Q ss_pred EEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCH-HHHHHHHHHHCCCCCEEEEEC----CCCHHHHHHH
Q ss_conf 05998538743012305111899987640273512620166336-889999996048885055205----5203578876
Q gi|254780767|r 194 KILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQ-ENLVRCIVSKWDISPEIIIDK----EQKKQVFMTC 268 (383)
Q Consensus 194 ~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~i~~~~----~~~~~~l~~s 268 (383)
.+.+.-|. -.+ .+..+.+++++..+....++..+.+...... ................+.... ++...+++.|
T Consensus 200 ~~i~~~g~-~~~-~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~ 277 (381)
T COG0438 200 FVVLYVGR-LDP-EKGLDLLIEAAAKLKKRGPDIKLVIVGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELAELLASA 277 (381)
T ss_pred EEEEEECC-CCC-CCCHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHC
T ss_conf 79999648-865-4799999999998532158648999995341288999999970888878991778989999999728
Q ss_pred HHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHH
Q ss_conf 3552331-----15668887627530254057741000010246761023024407842612420548989999999998
Q gi|254780767|r 269 NAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERL 343 (383)
Q Consensus 269 d~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~l 343 (383)
++.+..| |.+.+|++..|+|. |....+.....+.... .|- +++ . -.++.+++.+..+
T Consensus 278 ~~~v~ps~~e~~~~~~~Ea~a~g~pv-i~~~~~~~~~~~~~~~-----------~g~-~~~----~-~~~~~~~~~i~~~ 339 (381)
T COG0438 278 DVFVLPSLSEGFGLVLLEAMAAGTPV-IASDVGGIPEVVEDGE-----------TGL-LVP----P-GDVEELADALEQL 339 (381)
T ss_pred CEEEECCCCCCCCHHHHHHHHHCCEE-EECCCCCHHHHHCCCC-----------EEE-EEC----C-CCHHHHHHHHHHH
T ss_conf 09991786445588999999849869-9958998688430697-----------069-988----9-9999999999999
Q ss_pred HCCHHHHHHHHH-HHHHHHHHH
Q ss_conf 449899999999-999999983
Q gi|254780767|r 344 SQDTLQRRAMLH-GFENLWDRM 364 (383)
Q Consensus 344 l~d~~~r~~~~~-~~~~~~~~L 364 (383)
+++.+.++.+.+ ..+...+..
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~ 361 (381)
T COG0438 340 LEDPELREELGEAARERVEEEF 361 (381)
T ss_pred HHCHHHHHHHHHHHHHHHHHHC
T ss_conf 8697999999999999999866
No 101
>pfam05159 Capsule_synth Capsule polysaccharide biosynthesis protein. This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS and LipB.
Probab=92.05 E-value=0.27 Score=28.45 Aligned_cols=98 Identities=18% Similarity=0.218 Sum_probs=58.2
Q ss_pred EEEEECCC--CCCHHHHCC---CHHHHHHHHHHCCCCCEEEECCCCCHHHH--HHHHHHHCCC-CCEEEEECCCCHHHHH
Q ss_conf 59985387--430123051---11899987640273512620166336889--9999960488-8505520552035788
Q gi|254780767|r 195 ILLLPGSR--AQEIYKILP---FFESAVASLVKRNPFFRFSLVTVSSQENL--VRCIVSKWDI-SPEIIIDKEQKKQVFM 266 (383)
Q Consensus 195 I~llPGSR--~~EI~~~lP---~~l~~~~~l~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~-~~~i~~~~~~~~~~l~ 266 (383)
..|+|+=- .+-|..+.| .+.+++....+.+|+.+.++=.-|..... .......... ...+.....+..+++.
T Consensus 119 ~vLvplQv~~D~qI~~~s~~~~~~~~vl~sfa~~~Pda~lv~K~HP~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~Ll~ 198 (268)
T pfam05159 119 IVLVPLQVFDDSSIRLGSAVIDFFLEVLESFAEENPDAQIIIKPHPDVLGGNKYGLITELPGLERVDVIVHDVNLISLLR 198 (268)
T ss_pred EEEEECCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHCCCCEEEEECCCCHHHHHH
T ss_conf 89993678746666369965899999999999878898399968987546776454575455688199936999999998
Q ss_pred HHHHHHCCCHHHHHHHHHHCCCEEEE
Q ss_conf 76355233115668887627530254
Q gi|254780767|r 267 TCNAAMAASGTVILELALCGIPVVSI 292 (383)
Q Consensus 267 ~sd~ai~~SGTaTLE~al~g~P~IV~ 292 (383)
.|+.+++.+-|+-+|+.+.|+|.+++
T Consensus 199 ~~~~VvtvnSt~G~eALl~gkpV~~~ 224 (268)
T pfam05159 199 HVDEVVTITSTVGFEALLLGKPVITL 224 (268)
T ss_pred HCCEEEEECCHHHHHHHHCCCCEEEE
T ss_conf 57999996556899999859973894
No 102
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=91.66 E-value=1.1 Score=24.41 Aligned_cols=153 Identities=14% Similarity=0.115 Sum_probs=96.4
Q ss_pred CCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCC--CHHHHHHHHHHHCCCCCEE
Q ss_conf 35588897618765565059985387430123051118999876402735126201663--3688999999604888505
Q gi|254780767|r 177 EVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVS--SQENLVRCIVSKWDISPEI 254 (383)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~i 254 (383)
.++....++.+++.+.+.-.+.--||--+ .+-+..+++++..+.+.. .++++...+ ..+..+....+.++...-+
T Consensus 277 ~nk~~L~~~~gL~~~~~~pl~~~vsRl~~-QKG~dl~~~~i~~~l~~~--~~~vilG~gd~~le~~~~~la~~~~~~~~~ 353 (487)
T COG0297 277 ENKVALQERLGLDVDLPGPLFGFVSRLTA-QKGLDLLLEAIDELLEQG--WQLVLLGTGDPELEEALRALASRHPGRVLV 353 (487)
T ss_pred HHHHHHHHHHCCCCCCCCCEEEEEECCCC-CCCHHHHHHHHHHHHHHC--CEEEEEECCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 89999999809877999758999422420-134558999999999708--369998268278999999999866760999
Q ss_pred EE--ECCCCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEEE-ECCCCCCEEEEHHHCCCCCCCHH
Q ss_conf 52--0552035788763552331-----1566888762753025405774100001-02467610230244078426124
Q gi|254780767|r 255 II--DKEQKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNFFI-FYIKTWTCALPNLIVDYPLVPEY 326 (383)
Q Consensus 255 ~~--~~~~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~-~lik~~~i~LpNii~~~~ivPEl 326 (383)
.+ ...-...+++.||+-+..| |-.-++++..|++ .|+.+|..|.--+. +-.- + +.+ +--=|
T Consensus 354 ~i~~~~~la~~i~agaD~~lmPSrfEPcGL~ql~amryGtv-pIv~~tGGLadTV~~~~~~-------~-~~~--~gtGf 422 (487)
T COG0297 354 VIGYDEPLAHLIYAGADVILMPSRFEPCGLTQLYAMRYGTL-PIVRETGGLADTVVDRNEW-------L-IQG--VGTGF 422 (487)
T ss_pred EEEECHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHCCCC-CEECCCCCCCCEECCCCCH-------H-CCC--CEEEE
T ss_conf 96336899999984498999577676875899999871884-4675468865410376611-------0-037--50379
Q ss_pred HCCCCCHHHHHHHHHHH
Q ss_conf 20548989999999998
Q gi|254780767|r 327 FNSMIRSEALVRWIERL 343 (383)
Q Consensus 327 iQ~~~~~~~i~~~~~~l 343 (383)
+-...|++.+..++.+-
T Consensus 423 ~f~~~~~~~l~~al~rA 439 (487)
T COG0297 423 LFLQTNPDHLANALRRA 439 (487)
T ss_pred EEECCCHHHHHHHHHHH
T ss_conf 98269989999999999
No 103
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=90.40 E-value=0.68 Score=25.86 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=32.6
Q ss_pred EEEECHHHCCEEEHHHHH-HHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 065044453110136746-645999999999986100128886898
Q gi|254780767|r 50 VSLFDFSELSVIGIMQVV-RHLPQFIFRINQTVELIVSSKPDVLLI 94 (383)
Q Consensus 50 ~~~~~~~~l~v~G~~evl-~~~~~~~~~~~~~~~~i~~~~Pd~vi~ 94 (383)
++-||...=+.||+.+-+ .+++.+-+.-+++.+.|.++ |+.++.
T Consensus 3 ~~~~~~~~~~~~~l~~~Ir~~~~~Lt~sEk~IA~yIL~~-~~~v~~ 47 (293)
T PRK11337 3 QSEFDSALPNGIGLAPYIRMKQEGMTENESRVVDWLLKP-GNLSCA 47 (293)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCC-HHHHHH
T ss_conf 200576699877899999997764499999999999829-899976
No 104
>pfam08660 Alg14 Oligosaccharide biosynthesis protein Alg14 like. Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane.
Probab=89.77 E-value=1.6 Score=23.31 Aligned_cols=146 Identities=16% Similarity=0.209 Sum_probs=73.9
Q ss_pred EEEECCCCHHHHH-HHHHHHHHHHCCCCEEEEEECCHHHHHCCCEE-------EECHHHCCEEEHHHHHHHHHHHHHHHH
Q ss_conf 9997682147899-99999999738998399997178999478806-------504445311013674664599999999
Q gi|254780767|r 7 AVIAGEISGDLLA-GDLIKSLKEMVSYPINLVGVGGPSLQKEGLVS-------LFDFSELSVIGIMQVVRHLPQFIFRIN 78 (383)
Q Consensus 7 ~i~aGE~SGD~~~-a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~-------~~~~~~l~v~G~~evl~~~~~~~~~~~ 78 (383)
++++|- .|+..- -+|+++++++.. ...+..--++.+....++. +.....--.+|- .-+..++++.+.+-
T Consensus 2 ~vv~GS-GGHt~eml~L~~~l~~~~~-~~~yvv~~~D~~s~~~~~~~~~~~~~i~~~~r~R~v~q-s~~~s~~~~~~~~~ 78 (166)
T pfam08660 2 CVVLGS-GGHTAEMLRLLPFLKNLED-PRRYVVTETDKDSLSKASKFEKSRGGILKIPRAREVGQ-SYLRSIFTTLRNLL 78 (166)
T ss_pred EEEEEC-HHHHHHHHHHHHHHHHCCC-CCEEEEECCCHHHHHHHHHCCCCCCEEEECCCEEECCC-HHHHHHHHHHHHHH
T ss_conf 999948-2789999999998775689-73899988980789998860555523764463157385-56745999999999
Q ss_pred HHHHHCCCCCCCEEEEECHHHHHHHH---HHHHHHHC-CCCCCEEEEC------CCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99861001288868985117765799---99866301-3463111100------22110036635579999986401567
Q gi|254780767|r 79 QTVELIVSSKPDVLLIVDNPDFTHRV---AKRVRKKM-PNLPIINYVC------PSVWAWREGRARKMCAYINQVISILP 148 (383)
Q Consensus 79 ~~~~~i~~~~Pd~vi~iD~pgFnl~l---ak~lkk~~-~~ipvi~yv~------PqvWAWr~~R~k~~~~~~d~~~~ifp 148 (383)
+....+.+.+||++|+- -||-.+++ |+.+|-.. .+.++||.=+ |+. . .|.+..+.|..++=.|
T Consensus 79 ~s~~il~k~kPdvii~t-G~g~~vp~~~~a~ll~~~~~~~~k~i~iES~~r~~~~sl----t--gkll~~~ad~f~vqW~ 151 (166)
T pfam08660 79 SALKLLRRERPDVILCN-GPGTCVPFCLAAKLLKILGLKGTKIVYIESFARVKTLSL----S--GKLLYPLADRFIVQWP 151 (166)
T ss_pred HHHHHHHHHCCCEEEEC-CCCEEEHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCH----H--HHHHHHHCCEEEEECH
T ss_conf 99999985399899977-996030999999999864015885899984421378647----7--7769986898898379
Q ss_pred CCHHHHHCCCCCCEEECCC
Q ss_conf 7422320025531476388
Q gi|254780767|r 149 FEKEVMQRLGGPPTTFVGH 167 (383)
Q Consensus 149 FE~~~f~k~~~~~~~fVGH 167 (383)
--.+.|. ++.|+|.
T Consensus 152 ~l~~~yp-----~a~y~G~ 165 (166)
T pfam08660 152 ELKKKYP-----KAIYYGR 165 (166)
T ss_pred HHHHHCC-----CCEEEEC
T ss_conf 9994689-----9779703
No 105
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=89.68 E-value=1.7 Score=23.26 Aligned_cols=81 Identities=22% Similarity=0.296 Sum_probs=44.4
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH
Q ss_conf 98745999976821478999999999973899839999717899947880650444531101367466459999999999
Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383)
Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383)
|++|||+|+=-. .+.-..|-.-| +. .+++++.|-.++. .++
T Consensus 1 M~~irIlIvDDh---~lvr~Gl~~~L-~~-~~~~~vvg~a~~~----------------------------------~~~ 41 (216)
T PRK10840 1 MNNMNVIIADDH---PIVLFGIRKSL-EQ-IEWVNVVGEFEDS----------------------------------TAL 41 (216)
T ss_pred CCCCEEEEECCH---HHHHHHHHHHH-CC-CCCCEEEEEECCH----------------------------------HHH
T ss_conf 998889998897---99999999998-15-9996899987999----------------------------------999
Q ss_pred HHHCCCCCCCEEEE-ECHHHH----HHHHHHHHHHHCCCCCCEEE
Q ss_conf 86100128886898-511776----57999986630134631111
Q gi|254780767|r 81 VELIVSSKPDVLLI-VDNPDF----THRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 81 ~~~i~~~~Pd~vi~-iD~pgF----nl~lak~lkk~~~~ipvi~y 120 (383)
.+.+...+||++++ ++-||- -+.+.+.+|++.++++++-+
T Consensus 42 ~~~~~~~~pDvvllDl~mpg~~~~dGl~~~~~i~~~~p~~~vivl 86 (216)
T PRK10840 42 INNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVL 86 (216)
T ss_pred HHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 999862398989982677999887899999999985899808998
No 106
>PRK13114 consensus
Probab=89.49 E-value=1.7 Score=23.17 Aligned_cols=122 Identities=17% Similarity=0.217 Sum_probs=69.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC---------CHHHHHCCCEEE---------EC----H------HH
Q ss_conf 99997682147899999999997389983999971---------789994788065---------04----4------45
Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG---------GPSLQKEGLVSL---------FD----F------SE 57 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG---------G~~m~~~G~~~~---------~~----~------~~ 57 (383)
-|+.||-++=|.- ..++++|-+. +-| +.=+| ||--|++....+ ++ + ..
T Consensus 17 ~yitaG~P~~~~t-~~~i~~l~~~-GaD--iiEiGiPFSDP~ADGpvIq~A~~rAL~~G~~l~~~f~~v~~~r~~~~~~P 92 (266)
T PRK13114 17 AFITGGDPTPGDT-AANLDALVAG-GAD--VIELGMPFTDPMADGPAIQAANLRSLAAGTTTADIFRIAAEFRQRHPEVP 92 (266)
T ss_pred EEECCCCCCHHHH-HHHHHHHHHC-CCC--EEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 8870718998999-9999999976-999--99979998886776899999999999869979999999999874189988
Q ss_pred CCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHH
Q ss_conf 3110136746645999999999986100128886898511776-579999866301346311110022110036635579
Q gi|254780767|r 58 LSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKM 136 (383)
Q Consensus 58 l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~ 136 (383)
+-+||.+..+-+ .-.++..+.+++..-|.+|.+|-|-= .-.+.+.+++. |+..|+.|+|+- .+.|++++
T Consensus 93 ivlM~Y~N~i~~-----~G~~~F~~~~~~aGvdG~IipDLP~eE~~~~~~~~~~~--gi~~I~liaPtt---~~~Ri~~i 162 (266)
T PRK13114 93 LVLMGYANPMVR-----RGPDWFAAECKKAGVDGVICVDIPPEEDAELGPALRAA--GIDPIRLATPTT---DAARLPAV 162 (266)
T ss_pred EEEEEEHHHHHH-----HHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC--CCCEEEEECCCC---CHHHHHHH
T ss_conf 799863019998-----64999999999749977984589978889999999974--997267756999---79999999
Q ss_pred HHHHH
Q ss_conf 99998
Q gi|254780767|r 137 CAYIN 141 (383)
Q Consensus 137 ~~~~d 141 (383)
.+..+
T Consensus 163 ~~~a~ 167 (266)
T PRK13114 163 LEGAS 167 (266)
T ss_pred HHHCC
T ss_conf 97389
No 107
>PRK13134 consensus
Probab=87.73 E-value=1.6 Score=23.45 Aligned_cols=122 Identities=20% Similarity=0.292 Sum_probs=68.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC---------CHHHHHC-------CCEE--EECH---------HHC
Q ss_conf 99997682147899999999997389983999971---------7899947-------8806--5044---------453
Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG---------GPSLQKE-------GLVS--LFDF---------SEL 58 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG---------G~~m~~~-------G~~~--~~~~---------~~l 58 (383)
-|+.||-+|=+.- ..++++|.+. + +.+.=+| ||--|++ |.+. ++++ ..+
T Consensus 23 ~yitaG~P~~e~s-~~~i~~l~~~-G--aDiiEiGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~~~~~~~~pi 98 (257)
T PRK13134 23 PFLTAGFPTSERF-WDELEALDAA-G--ADIIEVGVPFSDPVADGPVVAAASQRALESGVTLRWIMDGLAARKGRLRAGL 98 (257)
T ss_pred EEEECCCCCHHHH-HHHHHHHHHC-C--CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCE
T ss_conf 8870707997999-9999999977-9--9999978988887655899999999999679987899999998744689998
Q ss_pred CEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHH-HHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHH
Q ss_conf 11013674664599999999998610012888689851177-65799998663013463111100221100366355799
Q gi|254780767|r 59 SVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPD-FTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMC 137 (383)
Q Consensus 59 ~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pg-Fnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~ 137 (383)
=+||.+..+.+| -.++..+.+++..-|.+|..|-|- -+-.+...+++. |+..|++|+|+- .+.|++.+.
T Consensus 99 vlMtY~N~i~~y-----G~e~F~~~~~~aGvdGvIipDLP~eE~~~~~~~~~~~--gi~~I~lvaPtt---~~~Ri~~i~ 168 (257)
T PRK13134 99 VLMGYLNPFMQY-----GFERFVRDAADAGVAGCIIPDLPLDEDADLRALLAAR--GMDLIALVGPNT---GEGRMREYA 168 (257)
T ss_pred EEEECCHHHHHH-----HHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC--CCCEEEECCCCC---CHHHHHHHH
T ss_conf 998534599974-----6899999998679875994699977889999999975--982699638999---999999999
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254780767|r 138 AYIN 141 (383)
Q Consensus 138 ~~~d 141 (383)
+..+
T Consensus 169 ~~s~ 172 (257)
T PRK13134 169 AVAS 172 (257)
T ss_pred HHCC
T ss_conf 6288
No 108
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I; InterPro: IPR011908 This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria .; GO: 0016757 transferase activity transferring glycosyl groups, 0009103 lipopolysaccharide biosynthetic process.
Probab=87.72 E-value=2.3 Score=22.41 Aligned_cols=270 Identities=14% Similarity=0.178 Sum_probs=156.1
Q ss_pred EEEEEECCCCHHHH-HHHHHHHHHHHCCCC-----EEEEEECCHHHHHCCCEEEECHHH----CCEEEHHHHHHHH--HH
Q ss_conf 59999768214789-999999999738998-----399997178999478806504445----3110136746645--99
Q gi|254780767|r 5 KIAVIAGEISGDLL-AGDLIKSLKEMVSYP-----INLVGVGGPSLQKEGLVSLFDFSE----LSVIGIMQVVRHL--PQ 72 (383)
Q Consensus 5 ki~i~aGE~SGD~~-~a~li~~Lk~~~~~~-----~~~~giGG~~m~~~G~~~~~~~~~----l~v~G~~evl~~~--~~ 72 (383)
||+|+=--+=||+. -.-.+..+++..| | ++|.=+. ++|+=-+...+. +--+-+=-.-|++ ..
T Consensus 1 ~ILIVktSSlGDviH~~Pa~~d~~r~~P-~iyPqr~~idWvV-----EE~FA~i~~~hp~V~~vi~~alRRWRK~lfs~~ 74 (359)
T TIGR02193 1 KILIVKTSSLGDVIHTLPALTDIKRALP-DIYPQRVEIDWVV-----EEGFADIVRLHPAVDEVIPVALRRWRKTLFSAA 74 (359)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCC-CCCCCEEEEEEEE-----ECCHHHHHHHCHHHHCCCCCCHHHHCCCCCCHH
T ss_conf 9578986101225455448999998578-9874347898876-----142110344153460000341112012748874
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECHHHH--HHHHHHHHH-HHCCCC-------C---C--E-----EEECCCCCCCCCCC
Q ss_conf 9999999986100128886898511776--579999866-301346-------3---1--1-----11002211003663
Q gi|254780767|r 73 FIFRINQTVELIVSSKPDVLLIVDNPDF--THRVAKRVR-KKMPNL-------P---I--I-----NYVCPSVWAWREGR 132 (383)
Q Consensus 73 ~~~~~~~~~~~i~~~~Pd~vi~iD~pgF--nl~lak~lk-k~~~~i-------p---v--i-----~yv~PqvWAWr~~R 132 (383)
.++.++.+++.++..+.|+| ||..|. +=-+|+.++ ....|. | . + |=|+|+.=||.+.|
T Consensus 75 ~~~e~~~l~~~Lr~~~YD~V--iD~QGL~KSA~~a~~a~~g~~~G~d~~SarEpYE~lA~lFY~~~~~v~~~~hav~R~R 152 (359)
T TIGR02193 75 TWREIKALRALLRAERYDAV--IDAQGLIKSALVARMARAGPRHGFDRRSAREPYERLASLFYNKRVSVSYQQHAVERNR 152 (359)
T ss_pred HHHHHHHHHHHCCCCCCCEE--ECCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHCCCCEECCCCCCHHHHHH
T ss_conf 89999999985200248824--5112468999999997065625158887655664122220135020786773889889
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHCC--CCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHC
Q ss_conf 5579999986401567742232002--55314763882112210013558889761876556505998538743012305
Q gi|254780767|r 133 ARKMCAYINQVISILPFEKEVMQRL--GGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKIL 210 (383)
Q Consensus 133 ~k~~~~~~d~~~~ifpFE~~~f~k~--~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~l 210 (383)
+.+...+-...--..-+.+|.-.. .+....+.||=. ..+.+..+.++.+.+++.+|.|+=+. .+.+
T Consensus 153 -~L~a~aLGY~~~~i~~~~d~Gl~~~~~a~~~~~~~~~~---------~~~~~r~l~~~k~~py~vllHaTSR~--dK~W 220 (359)
T TIGR02193 153 -KLFALALGYAPPEIAETIDFGLARRARAFSVAFLGLAL---------PLELVRALELDKDAPYAVLLHATSRD--DKKW 220 (359)
T ss_pred -HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH---------HHHHCCEEEEECCCCCEEEEECCCCC--CCCC
T ss_conf -99999818888875553200222654333311122001---------33201000110788968982144500--2358
Q ss_pred CC--HHHHHHHHHHCCCC-CEEEECCCCCHHHH-HHHHHHHCCCCCEEEE-EC---CCCHHHHHHHHHHHCC-CHHHHHH
Q ss_conf 11--18999876402735-12620166336889-9999960488850552-05---5203578876355233-1156688
Q gi|254780767|r 211 PF--FESAVASLVKRNPF-FRFSLVTVSSQENL-VRCIVSKWDISPEIII-DK---EQKKQVFMTCNAAMAA-SGTVILE 281 (383)
Q Consensus 211 P~--~l~~~~~l~~~~~~-~~~~i~~~~~~~~~-~~~~~~~~~~~~~i~~-~~---~~~~~~l~~sd~ai~~-SGTaTLE 281 (383)
|. +.++++.|.+.+ + ++.++|=.++.+.. -+.+....+...++++ .. .+.-..+..++++|.. +|=+.|
T Consensus 221 P~~~W~~l~~~L~e~~-gy~~~~LpWgn~~E~~~A~~la~~~~~~~~v~VlPk~~L~~va~~l~~a~avVGvDTGL~HL- 298 (359)
T TIGR02193 221 PEERWRELARLLLEER-GYLQIVLPWGNDAEKARAERLAEALPGAEDVVVLPKMSLAEVAALLAGADAVVGVDTGLTHL- 298 (359)
T ss_pred CHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCEEEEECCHHHHHH-
T ss_conf 6789999999970569-92798726998689999999986043031467758999899999881770799725248999-
Q ss_pred HHHHCCCEEEECCCC
Q ss_conf 876275302540577
Q gi|254780767|r 282 LALCGIPVVSIYKSE 296 (383)
Q Consensus 282 ~al~g~P~IV~Yk~~ 296 (383)
++++++|+|.+|..+
T Consensus 299 A~Al~kP~v~lY~~T 313 (359)
T TIGR02193 299 AAALDKPTVTLYGAT 313 (359)
T ss_pred HHHHCCCEEEEECCC
T ss_conf 998479769873587
No 109
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=87.65 E-value=2.3 Score=22.38 Aligned_cols=80 Identities=13% Similarity=0.149 Sum_probs=52.1
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHH
Q ss_conf 87459999768214789999999999738998399997178999478806504445311013674664599999999998
Q gi|254780767|r 2 NSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTV 81 (383)
Q Consensus 2 ~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~ 81 (383)
.+|||+|+=-|+. -+.+++..-++.+ +++..|..+.. .+..
T Consensus 3 ~~i~VLIVEDd~~----v~~~l~~~L~~~~-gf~~V~~A~~~----------------------------------~eA~ 43 (225)
T PRK10046 3 APLTLLIVEDETP----LAEMHAEYIRHIP-GFSQILLAGNL----------------------------------AQAR 43 (225)
T ss_pred CCCEEEEEECCHH----HHHHHHHHHHHCC-CCEEEEEECCH----------------------------------HHHH
T ss_conf 9886999959899----9999999997289-95499998999----------------------------------9999
Q ss_pred HHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE
Q ss_conf 6100128886898-5117765-7999986630134631111
Q gi|254780767|r 82 ELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 82 ~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383)
+.+..++||+|++ |--||.| +-+.+.+++.++.+|||-.
T Consensus 44 ~~l~~~~pDLvLLDi~LPd~~Glell~~lr~~~~~~~VI~i 84 (225)
T PRK10046 44 MMIERFKPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFT 84 (225)
T ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 99973599999982898999799999999964879988999
No 110
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=87.54 E-value=1.1 Score=24.53 Aligned_cols=30 Identities=13% Similarity=0.256 Sum_probs=18.1
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 36746-6459999999999861001288868
Q gi|254780767|r 63 IMQVV-RHLPQFIFRINQTVELIVSSKPDVL 92 (383)
Q Consensus 63 ~~evl-~~~~~~~~~~~~~~~~i~~~~Pd~v 92 (383)
+.+-+ .+++.+-+.-+++.+.|.++...++
T Consensus 3 il~rI~~~~~~Lt~~Ek~iA~yIl~n~~~v~ 33 (284)
T PRK11302 3 TLEKIQSRLEHLSKSERKVAEVILASPQTAI 33 (284)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHCCHHHHH
T ss_conf 8999999886459999999999980989997
No 111
>pfam04413 Glycos_transf_N 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase). Members of this family transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Members of the family transfer UDP, ADP, GDP or CMP linked sugars. The Glycos_transf_N region is flanked at the N-terminus by a signal peptide and at the C-terminus by Glycos_transf_1 (pfam00534). The eukaryotic glycogen synthases may be distant members of this bacterial family.
Probab=86.79 E-value=2.5 Score=22.07 Aligned_cols=146 Identities=21% Similarity=0.299 Sum_probs=77.0
Q ss_pred EEEEECCCCHHHHHH-HHHHHHHHHCCCCEEEE-EE---CCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH
Q ss_conf 999976821478999-99999997389983999-97---17899947880650444531101367466459999999999
Q gi|254780767|r 6 IAVIAGEISGDLLAG-DLIKSLKEMVSYPINLV-GV---GGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383)
Q Consensus 6 i~i~aGE~SGD~~~a-~li~~Lk~~~~~~~~~~-gi---GG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383)
|++=| -.=|+..++ .|+++|+++.+ +.++. -. .|-.+...- ..+ .+.-+. +| +-....+
T Consensus 24 IWiHa-aSvGE~~~~~~li~~l~~~~p-~~~iliT~~T~sg~~~~~~~---~~~----~~~~~y-----lP--~D~~~~~ 87 (186)
T pfam04413 24 IWLHA-ASVGEVLAALPLIEALKARYP-GLRILVTTTTPTGAELARKL---LPD----RVIHQY-----LP--LDLPGAV 87 (186)
T ss_pred EEEEE-CCHHHHHHHHHHHHHHHHHCC-CCEEEEEECCCHHHHHHHHH---CCC----CCEEEE-----CC--CCCHHHH
T ss_conf 99983-988999999999999998689-96299983581699999986---789----807997-----77--6777999
Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEE---ECCC---CCCCCCCCHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 8610012888689851177657999986630134631111---0022---110036635579999986401567742232
Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINY---VCPS---VWAWREGRARKMCAYINQVISILPFEKEVM 154 (383)
Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~y---v~Pq---vWAWr~~R~k~~~~~~d~~~~ifpFE~~~f 154 (383)
.+.+...+||++|++.+- +=-.+-..++++ |||++-. ++++ -|.|-.+=.+.+-+.+|++++-=.-..+-|
T Consensus 88 ~~fl~~~~P~~~i~~e~E-iWPnli~~~~~~--~ip~~linar~s~~s~~~~~~~~~~~~~~l~~~~~i~~qs~~~~~r~ 164 (186)
T pfam04413 88 RRFLKHWRPDLLVIVETE-LWPNLIAAAKKR--GIPVVLVNARLSERSARRYRRFPGLFRPLLRRFDLILAQSEEDAERF 164 (186)
T ss_pred HHHHHHHCCCEEEEEECC-HHHHHHHHHHHC--CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHH
T ss_conf 999998599889998613-209999999987--99999997776864222688899999999984599996899999999
Q ss_pred HCCCCC---CEEECCCCCCC
Q ss_conf 002553---14763882112
Q gi|254780767|r 155 QRLGGP---PTTFVGHPLSS 171 (383)
Q Consensus 155 ~k~~~~---~~~fVGHPl~d 171 (383)
.+. |+ ++...|+.=.|
T Consensus 165 ~~l-G~~~~~v~v~GnlKfd 183 (186)
T pfam04413 165 RAL-GAPPDRVEVTGNLKFD 183 (186)
T ss_pred HHC-CCCHHHEEEECCCCCC
T ss_conf 984-9983578991877667
No 112
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.45 E-value=2.6 Score=21.95 Aligned_cols=284 Identities=15% Similarity=0.196 Sum_probs=125.2
Q ss_pred HHHHHHHHHCCCCEEEEEEC--CHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE---E
Q ss_conf 99999997389983999971--789994788065044453110136746645999999999986100128886898---5
Q gi|254780767|r 21 DLIKSLKEMVSYPINLVGVG--GPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLI---V 95 (383)
Q Consensus 21 ~li~~Lk~~~~~~~~~~giG--G~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~---i 95 (383)
-++++|+.. +..+-|+-.| |..--..+ +-. -|-.+++..-+ .-......++.++||.++. .
T Consensus 22 ~~~~~l~~~-g~kvlflE~~~~~~~k~rd~-----~~~----~~~~~~~~~~~----~e~~~~~~i~~fk~d~iv~~~~~ 87 (373)
T COG4641 22 GLLRALKMD-GMKVLFLESGDFWDYKNRDI-----DAE----DGCTEAFYKDQ----PELESLLYIREFKPDIIVNMSGD 87 (373)
T ss_pred HHHHHHHHC-CCEEEEEECCCHHHHHCCCC-----CCC----CCHHHEEECCC----HHHHHHHHHHHCCCCEEEEECCC
T ss_conf 999999856-55489983262775406445-----676----56001000574----78999998986287479995156
Q ss_pred CHHHHHHHHHH--HHHHHCCCCCC-EEEECCCCCCCCCCCHHHHHHHHHH-----HCCCCCC---------CHHHHHCCC
Q ss_conf 11776579999--86630134631-1110022110036635579999986-----4015677---------422320025
Q gi|254780767|r 96 DNPDFTHRVAK--RVRKKMPNLPI-INYVCPSVWAWREGRARKMCAYINQ-----VISILPF---------EKEVMQRLG 158 (383)
Q Consensus 96 D~pgFnl~lak--~lkk~~~~ipv-i~yv~PqvWAWr~~R~k~~~~~~d~-----~~~ifpF---------E~~~f~k~~ 158 (383)
|.|++-..... .+++. ++|+ ++|+.--+= ...+.+...+ -+.+|.+ -..+|++..
T Consensus 88 ~~~~~~~~~~~~a~l~~~--~l~~~~w~te~p~~------~~~~~~~~~~~~~~~~l~~fd~v~~~g~~l~~~~yyq~~~ 159 (373)
T COG4641 88 DQPDEESTIDLWAWLKRK--CLPVIVWYTEDPYD------TDIFSQVAEEQLARRPLFIFDNVLSFGGGLVANKYYQEGG 159 (373)
T ss_pred CCCCCEEHHHHHHHHHCC--CCCEEEEEECCCHH------HHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 664410017999985267--86269997146002------4666530177761055513342331264078899987623
Q ss_pred CCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCC-EEEEEECCC----CCCHHHHCCCHHHHHHHHHHCCCCCEEEECC
Q ss_conf 53147638821122100135588897618765565-059985387----4301230511189998764027351262016
Q gi|254780767|r 159 GPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWK-KILLLPGSR----AQEIYKILPFFESAVASLVKRNPFFRFSLVT 233 (383)
Q Consensus 159 ~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~-~I~llPGSR----~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~ 233 (383)
+.++.+++.+.=+.... +. ..+.... -+++. |++ -+|++. .+++.+..+.... .|..-.
T Consensus 160 ~~~~~~~~~a~d~~~~~--~i-------~~da~~~~dL~~i-gn~~pDr~e~~ke---~~~~ps~kl~v~r---r~~~~g 223 (373)
T COG4641 160 ARNCYYLPWAVDDSLFH--PI-------PPDASYDVDLNLI-GNPYPDRVEEIKE---FFVEPSFKLMVDR---RFYVLG 223 (373)
T ss_pred CCCEECCCCCCCCHHCC--CC-------CCCCCCEEEEEEE-CCCCCCHHHHHHH---HHHCCCHHHHCCC---EEEECC
T ss_conf 55113057567823206--69-------8541301336773-5888557899999---8615201110065---345507
Q ss_pred CCCHHHHH--------HHHHHHCCC--CCEEEEECCCCHHHHHHHHHHHCCC--HHHHHHHHHHCCCEEEECCCCCCEEE
Q ss_conf 63368899--------999960488--8505520552035788763552331--15668887627530254057741000
Q gi|254780767|r 234 VSSQENLV--------RCIVSKWDI--SPEIIIDKEQKKQVFMTCNAAMAAS--GTVILELALCGIPVVSIYKSEWIVNF 301 (383)
Q Consensus 234 ~~~~~~~~--------~~~~~~~~~--~~~i~~~~~~~~~~l~~sd~ai~~S--GTaTLE~al~g~P~IV~Yk~~~lt~~ 301 (383)
++..+.+ .+....... ...-.....+..--+..++.+-+-+ -+.|-|+|.+|.|++.-|... .
T Consensus 224 -~~y~~~~~~~~~~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~liT~~~~~----~ 298 (373)
T COG4641 224 -PRYPDDIWGRTWEPNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFLITDYWKD----L 298 (373)
T ss_pred -CCCCHHHHCCCCCCHHHHHHCCCCCCHHHHCCCCCCEEEEECHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHH----H
T ss_conf -76523442113365666633268500000003554435641378887614785056888761587501542788----9
Q ss_pred EEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHH
Q ss_conf 0102467610230244078426124205489899999999984498999999-9999999998
Q gi|254780767|r 302 FIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAM-LHGFENLWDR 363 (383)
Q Consensus 302 i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~-~~~~~~~~~~ 363 (383)
=.++..-+. ++ --.+++.+...+..++..++.|+++ ..++++++..
T Consensus 299 e~~f~pgk~-----------~i-----v~~d~kdl~~~~~yll~h~~erkeiae~~ye~V~~~ 345 (373)
T COG4641 299 EKFFKPGKD-----------II-----VYQDSKDLKEKLKYLLNHPDERKEIAECAYERVLAR 345 (373)
T ss_pred HHHCCCCHH-----------EE-----EECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 872598602-----------58-----963789999999998448306899998669999874
No 113
>PRK13112 consensus
Probab=85.87 E-value=1.8 Score=23.01 Aligned_cols=121 Identities=17% Similarity=0.275 Sum_probs=67.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC---------CHHHHHC-------CCEE------EE------CHHH
Q ss_conf 99997682147899999999997389983999971---------7899947-------8806------50------4445
Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG---------GPSLQKE-------GLVS------LF------DFSE 57 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG---------G~~m~~~-------G~~~------~~------~~~~ 57 (383)
-|+.+|.+|=|.- -.++++|-+. + +.+.=+| ||--|++ |++. +- +-..
T Consensus 22 ~yitaG~P~~~~s-~~~l~~l~~~-G--aDiiElGiPFSDPvADGPvIQ~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~P 97 (279)
T PRK13112 22 TYFMGGDPDLETS-LKIMKALPKA-G--ADIIELGMPFSDPMADGPAIQAAGLRALKAGQTLAKTLYLAREFRKDDDTTP 97 (279)
T ss_pred EEEECCCCCHHHH-HHHHHHHHHC-C--CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 8860738997899-9999999877-9--9989978998986665799999999999769968899999998513489988
Q ss_pred CCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHH
Q ss_conf 3110136746645999999999986100128886898511776-579999866301346311110022110036635579
Q gi|254780767|r 58 LSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKM 136 (383)
Q Consensus 58 l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~ 136 (383)
+-.||.+..+.++. .++..+.+++..-|.+|.+|-|-= .-.+.+.++++ |+..|+.|+|+- .+.|++++
T Consensus 98 ivlM~Y~N~i~~~G-----~e~F~~~~~~aGvdGvIipDLP~eE~~~~~~~~~~~--~i~~I~lvaPtt---~~eRi~~i 167 (279)
T PRK13112 98 IVLMGYYNPIYIYG-----VERFLTDAKAAGVDGLIVVDLPPEMDAELCIPAMKA--GINFIRLATPTT---DDKRLPKV 167 (279)
T ss_pred EEEEEECHHHHHHC-----HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC--CCCEEEEECCCC---CHHHHHHH
T ss_conf 79985124998847-----999999999739987984699978889999999857--834699825899---89999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780767|r 137 CAYI 140 (383)
Q Consensus 137 ~~~~ 140 (383)
.+..
T Consensus 168 ~~~s 171 (279)
T PRK13112 168 LANT 171 (279)
T ss_pred HHCC
T ss_conf 8527
No 114
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain; InterPro: IPR012822 This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (IPR012821 from INTERPRO), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant sucrose phosphate synthase (SPS). At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase..
Probab=85.55 E-value=2.3 Score=22.37 Aligned_cols=251 Identities=19% Similarity=0.229 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHCCC--CCCCEEEE--ECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHH---------
Q ss_conf 9999999999861001--28886898--5117765799998663013463111100221100366355799---------
Q gi|254780767|r 71 PQFIFRINQTVELIVS--SKPDVLLI--VDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMC--------- 137 (383)
Q Consensus 71 ~~~~~~~~~~~~~i~~--~~Pd~vi~--iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~--------- 137 (383)
|.+=...++++.++++ +.||++=+ =|+.=---+|+..| +||.||=- =+.- |++|.+-++
T Consensus 95 PyLD~~~D~~l~ylr~~g~lPdlIH~HYADAGYVG~~ls~~L-----~vPlvfTG-HSLG--R~Kr~RLLa~G~~skaPk 166 (445)
T TIGR02472 95 PYLDELADQLLSYLRQQGRLPDLIHAHYADAGYVGARLSRLL-----GVPLVFTG-HSLG--REKRRRLLAAGLKSKAPK 166 (445)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHC-----CCCEEEEC-CCCC--HHHHHHHHHCCCCCCCCC
T ss_conf 007899999999997358888731010101558999998625-----89848837-5357--789999984340026788
Q ss_pred --HHHHHHCCC--------------------CCCCHH--H--HHCC---------CCCCEEECCCCCCCCCCCCCCHHHH
Q ss_conf --999864015--------------------677422--3--2002---------5531476388211221001355888
Q gi|254780767|r 138 --AYINQVISI--------------------LPFEKE--V--MQRL---------GGPPTTFVGHPLSSSPSILEVYSQR 182 (383)
Q Consensus 138 --~~~d~~~~i--------------------fpFE~~--~--f~k~---------~~~~~~fVGHPl~d~~~~~~~~~~~ 182 (383)
+-++..++| =-.|.+ | |+++ +|+++.=. ||+-.......-....
T Consensus 167 P~~~IE~~f~is~RI~AEE~tL~~AslvitST~QEi~~QY~~Y~~y~P~r~~VIPPGvD~~rF-yp~~~~~~~~~i~~~L 245 (445)
T TIGR02472 167 PPQEIEKQFNISRRIEAEEETLAHASLVITSTHQEIEEQYALYDSYDPERMEVIPPGVDLSRF-YPPQSSEEDSEIDKLL 245 (445)
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHCCEEEEECCCEEHHHHCCCCCCCCCCCEECCCCCCCCCC-CCCCCCCCCHHHHHHH
T ss_conf 778999861226414788999851474586145103212101478670211351788887543-4788888875888752
Q ss_pred HHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHH---HHHHCCCCCEEEECCCCCHH-------H---HHHHHHHHCC
Q ss_conf 976187655650599853874301230511189998---76402735126201663368-------8---9999996048
Q gi|254780767|r 183 NKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVA---SLVKRNPFFRFSLVTVSSQE-------N---LVRCIVSKWD 249 (383)
Q Consensus 183 ~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~---~l~~~~~~~~~~i~~~~~~~-------~---~~~~~~~~~~ 249 (383)
...+. ++++|.|+-+ ||.-+ ++|++.++++-= .|+ ..-|+..++-+=.+.. + .+-..+..|+
T Consensus 246 ~rFL~-~p~KP~ilai--sRpd~-RKNi~~Lv~aYG~~p~L~-~~aNLVlvlG~RdD~r~me~~qR~Vl~~vl~~iD~YD 320 (445)
T TIGR02472 246 ARFLK-DPEKPPILAI--SRPDR-RKNIPALVEAYGRSPKLQ-EMANLVLVLGSRDDIRKMESSQREVLTEVLLLIDRYD 320 (445)
T ss_pred HHHCC-CCCCCEEEEE--CCCCC-CCCHHHHHHHHCCCHHHH-HHCCEEEEECCCCCHHHCHHHHHHHHHHHHHHHCCCC
T ss_conf 23114-7887838872--27887-667455562007886676-5208088752778853121578999999987630002
Q ss_pred CCCEEEE----ECCCCHHHHHHHH--------HHHCC-CHHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHH
Q ss_conf 8850552----0552035788763--------55233-115668887627530254057741000010246761023024
Q gi|254780767|r 250 ISPEIII----DKEQKKQVFMTCN--------AAMAA-SGTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNL 316 (383)
Q Consensus 250 ~~~~i~~----~~~~~~~~l~~sd--------~ai~~-SGTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNi 316 (383)
+--+|-. -.++-.+++..|- =|++= -|=.=||+|.+|+|+|-- .--|--.|
T Consensus 321 LYGkvAyPK~H~~~dvP~lYRLAA~~rGiFVNPALTEPFGLTLlEAAAcGLPivAT----------------~DGGP~dI 384 (445)
T TIGR02472 321 LYGKVAYPKHHRPDDVPELYRLAARRRGIFVNPALTEPFGLTLLEAAACGLPIVAT----------------EDGGPRDI 384 (445)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHCCCCEEEC----------------CCCCCHHH
T ss_conf 45640268888811232678999865986762721253016899999769972107----------------86486688
Q ss_pred HCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 4078426124205489899999999984498999999
Q gi|254780767|r 317 IVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAM 353 (383)
Q Consensus 317 i~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~ 353 (383)
|++++- =||=+-.+.+.|..++.+.++|.+.=+..
T Consensus 385 ~~~C~N--GLLvd~ld~e~i~~AL~~alsd~~QW~~W 419 (445)
T TIGR02472 385 IANCRN--GLLVDVLDLEAIASALEQALSDSSQWQTW 419 (445)
T ss_pred HHHCCC--CCEECCCCHHHHHHHHHHHCCCHHHHHHH
T ss_conf 842888--75005789899999999733890667899
No 115
>PRK13122 consensus
Probab=85.46 E-value=1.8 Score=23.03 Aligned_cols=124 Identities=19% Similarity=0.296 Sum_probs=72.1
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC---------CHHHHHC-------CCEE--EEC-H------
Q ss_conf 9874599997682147899999999997389983999971---------7899947-------8806--504-4------
Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG---------GPSLQKE-------GLVS--LFD-F------ 55 (383)
Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG---------G~~m~~~-------G~~~--~~~-~------ 55 (383)
|.++=|=.++|.+.- -..++.|.+. + +.+.=+| ||--|++ |.+. +++ +
T Consensus 1 ~~K~fipyi~g~pd~----~~~~~~l~~~-G--aDiiElGiPfSDP~ADGpvIQ~A~~rAL~~G~~~~~~~~~l~~~r~~ 73 (242)
T PRK13122 1 MTKLFIPYIMGNKDL----IENATLLSEN-G--ADIIEIGVPFSDPVADGPVIMEAGQQAIKQGITIDYIFNQLEKHGDQ 73 (242)
T ss_pred CCEEEEEEECCCCCH----HHHHHHHHHC-C--CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
T ss_conf 972377762689999----9999999975-9--99999789888866658999999999997699899999999973136
Q ss_pred --HHCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC
Q ss_conf --453110136746645999999999986100128886898511776-57999986630134631111002211003663
Q gi|254780767|r 56 --SELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVCPSVWAWREGR 132 (383)
Q Consensus 56 --~~l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R 132 (383)
..+-+||.+..+.++. .++..+.+.+..-|.+|.+|-|-= +-.+.+.++++ |+..|++|+|+- .+.|
T Consensus 74 ~~~pivlM~Y~N~i~~~G-----~~~F~~~~~~~GvdGvIipDLP~ee~~~~~~~~~~~--gi~~I~lvaPtt---~~~R 143 (242)
T PRK13122 74 IKCNYVLMTYYNIICHYG-----EQAFFEKCRDTGVYGLIIPDLPYELSQRLKQQFSHY--GVKIISLVAMTT---DDKR 143 (242)
T ss_pred CCCCEEEEEECHHHHHHC-----HHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHC--CCCEEEEECCCC---CHHH
T ss_conf 798779998516988727-----999999998769986777899878899999999867--986898718999---8999
Q ss_pred HHHHHHHHH
Q ss_conf 557999998
Q gi|254780767|r 133 ARKMCAYIN 141 (383)
Q Consensus 133 ~k~~~~~~d 141 (383)
++.+.+..+
T Consensus 144 i~~i~~~s~ 152 (242)
T PRK13122 144 IKDIVSHAE 152 (242)
T ss_pred HHHHHHHCC
T ss_conf 999998299
No 116
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=85.37 E-value=3 Score=21.61 Aligned_cols=90 Identities=19% Similarity=0.298 Sum_probs=53.5
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45999976821478999999999973899839999717899947880650444531101367466459999999999861
Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVEL 83 (383)
Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~ 83 (383)
|||+|..+- -.+|..|.+.+... + ++...++..... ..|+++ ...+.+.
T Consensus 1 MkILvtGa~---GqLG~~l~~~l~~~-~-~~~~~~~~~~~~-------~~Dit~-------------------~~~v~~~ 49 (299)
T PRK09987 1 MNILLFGKT---GQVGWELQRALAPL-G-NLIALDVHSTDY-------CGDFSN-------------------PEGVAET 49 (299)
T ss_pred CEEEEECCC---CHHHHHHHHHHHHC-C-CEEEEECCCCCC-------CCCCCC-------------------HHHHHHH
T ss_conf 979998999---97899999986650-9-889985263001-------367899-------------------9999999
Q ss_pred CCCCCCCEEEE------ECHHHH--------H----HHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 00128886898------511776--------5----7999986630134631111002211
Q gi|254780767|r 84 IVSSKPDVLLI------VDNPDF--------T----HRVAKRVRKKMPNLPIINYVCPSVW 126 (383)
Q Consensus 84 i~~~~Pd~vi~------iD~pgF--------n----l~lak~lkk~~~~ipvi~yv~PqvW 126 (383)
+.+.+||+||= ||.-.= | -.||+.+++. |+++||+-+=+|.
T Consensus 50 ~~~~~Pd~IIN~aA~T~VD~~E~~~~~a~~vN~~~~~~La~~~~~~--~~~lIhiSTD~VF 108 (299)
T PRK09987 50 VRKIRPDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEV--GAWVVHYSTDYVF 108 (299)
T ss_pred HHHCCCCEEEECHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHC--CCEEEEECCCEEE
T ss_conf 9965999999883101636652489999998889999999999973--9859996321160
No 117
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=85.29 E-value=3 Score=21.58 Aligned_cols=20 Identities=35% Similarity=0.557 Sum_probs=13.1
Q ss_pred HHHHHHHHHCCCEEEECCCC
Q ss_conf 56688876275302540577
Q gi|254780767|r 277 TVILELALCGIPVVSIYKSE 296 (383)
Q Consensus 277 TaTLE~al~g~P~IV~Yk~~ 296 (383)
.|-.||..+|+|.|-+-.++
T Consensus 141 ~ai~Ea~~l~IPvI~i~Dtn 160 (193)
T cd01425 141 QAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred HHHHHHHHHCCCEEEEECCC
T ss_conf 89999986187557885089
No 118
>PRK04607 consensus
Probab=85.26 E-value=3 Score=21.58 Aligned_cols=90 Identities=24% Similarity=0.322 Sum_probs=46.3
Q ss_pred CCCCE-EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH-----HHHCCCEEEE-CHHH-----------CCE--
Q ss_conf 98745-99997682147899999999997389983999971789-----9947880650-4445-----------311--
Q gi|254780767|r 1 MNSLK-IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPS-----LQKEGLVSLF-DFSE-----------LSV-- 60 (383)
Q Consensus 1 m~~mk-i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~-----m~~~G~~~~~-~~~~-----------l~v-- 60 (383)
|++|| |.|+.||++| .|..++-++.+... ..++.=+|... ++..|++.-+ ++.. +.+
T Consensus 2 M~~~k~IaIT~GDPaG--IGpEIilk~~~~~~-~~~~viigd~~~l~~~~~~lg~~~~~~~~~~~~~~~~~~~~~l~v~~ 78 (330)
T PRK04607 2 MNSIKRIVVTAGEPAG--IGPDLVLALSKEDW-PHQLVVCADKQLLAERAAQLGIQVQLLDYNADLAPQAQQAGTLLVEH 78 (330)
T ss_pred CCCCCCEEEECCCCCH--HHHHHHHHHHHHCC-CCCEEEEECHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEEEEEC
T ss_conf 9889948995588762--17999999851358-88879998999999999984999457555866556624488458843
Q ss_pred --------EEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf --------0136746645999999999986100128886898
Q gi|254780767|r 61 --------IGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLI 94 (383)
Q Consensus 61 --------~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~ 94 (383)
.|-.. -.+-...++.++..++.+++.+.|++|+
T Consensus 79 ~~~~~~~~~G~~s-~~~g~~~~~sl~~Av~~~~~g~~dalVT 119 (330)
T PRK04607 79 IELAEPVVAGQLN-EANGHYVLKTLERAALGCMNGEFDAIVT 119 (330)
T ss_pred CCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 5667877889739-8999999999999999997298788997
No 119
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=85.06 E-value=1.8 Score=23.05 Aligned_cols=122 Identities=19% Similarity=0.289 Sum_probs=72.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC---------CHHHHHCCCEEEE-------------C------HHH
Q ss_conf 99997682147899999999997389983999971---------7899947880650-------------4------445
Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG---------GPSLQKEGLVSLF-------------D------FSE 57 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG---------G~~m~~~G~~~~~-------------~------~~~ 57 (383)
-|+.||-+|=|.- .+++++|.+. + +.+.=+| ||--|++....+- . -..
T Consensus 13 ~yi~aG~P~~~~~-~~~i~~l~~~-G--aDiiEiGiPFSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~~~~~p 88 (258)
T pfam00290 13 PFVTAGDPDLETT-LEILEALEEA-G--ADAIELGIPFSDPLADGPTIQRANLRALAGGMTLDQTLELVEEIRNKGTSVP 88 (258)
T ss_pred EEEECCCCCHHHH-HHHHHHHHHC-C--CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 8870738998999-9999999976-9--9999978998887665899999999999869969999999998551289988
Q ss_pred CCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHH
Q ss_conf 3110136746645999999999986100128886898511776-579999866301346311110022110036635579
Q gi|254780767|r 58 LSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKM 136 (383)
Q Consensus 58 l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~ 136 (383)
+-+||.+..+.++. .++..+.+++..-|.+|..|-|-= .-.+.+.+++. |+..|++|+|+-= +.|++.+
T Consensus 89 ivlM~Y~N~i~~~G-----~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~--~l~~I~lvsPtt~---~~Ri~~i 158 (258)
T pfam00290 89 IVLMTYYNPVLNYG-----IERFYAQAAEAGVDGLIIPDLPPEEADPLREAAEKH--GIDLIFLVAPTTS---DERLKTI 158 (258)
T ss_pred EEEEEECHHHHHCC-----HHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHC--CCCEEEEECCCCC---HHHHHHH
T ss_conf 89985208898729-----999999999759977870799988999999999845--8435888458881---9999999
Q ss_pred HHHHH
Q ss_conf 99998
Q gi|254780767|r 137 CAYIN 141 (383)
Q Consensus 137 ~~~~d 141 (383)
.+..+
T Consensus 159 ~~~s~ 163 (258)
T pfam00290 159 SEAAS 163 (258)
T ss_pred HHHCC
T ss_conf 96089
No 120
>PRK13132 consensus
Probab=84.29 E-value=1.9 Score=22.93 Aligned_cols=123 Identities=17% Similarity=0.270 Sum_probs=70.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEE-------CCHHHHHCCCEEE---------ECH-------HHCCEEE
Q ss_conf 9999768214789999999999738998399997-------1789994788065---------044-------4531101
Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGV-------GGPSLQKEGLVSL---------FDF-------SELSVIG 62 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~gi-------GG~~m~~~G~~~~---------~~~-------~~l~v~G 62 (383)
-|+.||-++=|.- .+++++|.+. +-|+-=.|+ -||--|.+....+ +++ ..+-+||
T Consensus 15 ~yitaG~P~~e~s-~~~~~~l~~~-GaDiiEiGiPfSDP~aDGPvIq~A~~~AL~~G~~~~~~~~~~~~ir~~~pivlM~ 92 (246)
T PRK13132 15 GYIVAGYPNLETT-KEFLQRLDES-PLDILELGIPYSDPLADGKLIADASFIALQQGVNTDTVFELLARVKTKKALVFLV 92 (246)
T ss_pred EEEECCCCCHHHH-HHHHHHHHHC-CCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 7882858998999-9999999974-9998997898888765589999999999877998999999999753699979996
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHH-HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 367466459999999999861001288868985117-7657999986630134631111002211003663557999998
Q gi|254780767|r 63 IMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNP-DFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYIN 141 (383)
Q Consensus 63 ~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~p-gFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d 141 (383)
....+.++ -.++..+.+++..-|.+|..|-| +-+-.+.+.+++. ++..|++|+|+- +.|++.+.+..+
T Consensus 93 Y~N~i~~~-----G~e~F~~~~~~~GvdGlIipDLP~ee~~~~~~~~~~~--~i~~I~lvaPTs----~~R~~~i~~~s~ 161 (246)
T PRK13132 93 YYNLIFAY-----GLEKFVKKAKELGISGLIVPDLPFEESEELIKECEKY--NIALIPLISVTS----PKRAKKILKHAK 161 (246)
T ss_pred ECHHHHHC-----CHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHC--CCCEEEEECCCC----HHHHHHHHHCCC
T ss_conf 01088772-----9999999998769985775799978989999999985--997014425797----899999995489
No 121
>pfam00072 Response_reg Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.
Probab=84.10 E-value=1.1 Score=24.45 Aligned_cols=42 Identities=26% Similarity=0.683 Sum_probs=29.5
Q ss_pred HHHHHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE
Q ss_conf 9986100128886898-5117765-7999986630134631111
Q gi|254780767|r 79 QTVELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 79 ~~~~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383)
+..+.+.+++||++++ +.-||.| +.+++.+|+..+.+|+|-.
T Consensus 33 ~al~~~~~~~~dlvi~Di~mP~~dG~el~~~ir~~~~~~piI~~ 76 (111)
T pfam00072 33 EALELLKEKRPDLILLDIRMPGMDGLELLRRIRRRPPTTPVIVL 76 (111)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 99999984799899995368995015799999735999809999
No 122
>PRK13140 consensus
Probab=83.98 E-value=2.9 Score=21.74 Aligned_cols=124 Identities=20% Similarity=0.238 Sum_probs=70.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEE-------CCHHHHHCCCEEEEC---H---------------HHCCE
Q ss_conf 9999768214789999999999738998399997-------178999478806504---4---------------45311
Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGV-------GGPSLQKEGLVSLFD---F---------------SELSV 60 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~gi-------GG~~m~~~G~~~~~~---~---------------~~l~v 60 (383)
.|+.||-+|=|.- ..++++|-+. +-|+-=.|+ -||--|++....+-+ + ..+-+
T Consensus 18 ~y~taG~P~~~~s-~~~~~~l~~~-GaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~pivl 95 (257)
T PRK13140 18 IYFTAGYPTLEDT-VSIIKDLEKH-GVDMIEIGIPFSDPLADGPVIQKSATQALKNGMTLKLLFEQLKDIRKEVQIPLIL 95 (257)
T ss_pred EEEECCCCCHHHH-HHHHHHHHHC-CCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf 8881828987999-9999999975-9999997898898776589999999999986998999999999974368988899
Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHH--HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHH
Q ss_conf 0136746645999999999986100128886898511776--57999986630134631111002211003663557999
Q gi|254780767|r 61 IGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDF--THRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCA 138 (383)
Q Consensus 61 ~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF--nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~ 138 (383)
||....+.++ -.++..+.+++..-|.+|..|-|-= .-.+.+.+++. |+..|++|+|+-= +.|++.+.+
T Consensus 96 M~Y~N~i~~~-----G~e~F~~~~~~~GvdGlIipDLP~ee~~~~~~~~~~~~--~i~~I~lvaPtt~---~~Ri~~i~~ 165 (257)
T PRK13140 96 MGYLNPIMQY-----GFEKFCKKCAETGIDGVIIPDLPFDDYQEHYKEIFEKY--GLKNIMLITPQTS---EERIREIDS 165 (257)
T ss_pred EECHHHHHHH-----CHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCC---HHHHHHHHH
T ss_conf 9055999851-----79999999998499869835998567589999999986--9977998689998---999999997
Q ss_pred HHH
Q ss_conf 998
Q gi|254780767|r 139 YIN 141 (383)
Q Consensus 139 ~~d 141 (383)
..+
T Consensus 166 ~a~ 168 (257)
T PRK13140 166 HTD 168 (257)
T ss_pred HCC
T ss_conf 399
No 123
>PRK13120 consensus
Probab=83.72 E-value=3.3 Score=21.33 Aligned_cols=122 Identities=19% Similarity=0.297 Sum_probs=74.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC---------CHHHHHC-------CCE--EEECH----------HH
Q ss_conf 99997682147899999999997389983999971---------7899947-------880--65044----------45
Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG---------GPSLQKE-------GLV--SLFDF----------SE 57 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG---------G~~m~~~-------G~~--~~~~~----------~~ 57 (383)
-|+.||-+|=|.- -.++++|-+. +-| +.=+| ||--|++ |.+ .++++ ..
T Consensus 25 ~yitaG~P~~~~t-~~~l~~l~~~-GaD--iiElGiPFSDPvADGPvIQ~A~~rAL~~G~~l~~vl~~v~~~r~~~~~~P 100 (285)
T PRK13120 25 PYIAAGDPSPQAT-VPLMHALVRA-GAD--LVELGVPFSDPMADGPVVQRAAERAIAQGVGLRRVLELVADFRRDDSVTP 100 (285)
T ss_pred EEECCCCCCHHHH-HHHHHHHHHC-CCC--EEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 7857858998999-9999999976-999--99978987874566899999999999769984469999999873489888
Q ss_pred CCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHH-HHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHH
Q ss_conf 31101367466459999999999861001288868985117765-79999866301346311110022110036635579
Q gi|254780767|r 58 LSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDFT-HRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKM 136 (383)
Q Consensus 58 l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFn-l~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~ 136 (383)
+-+||.+..+.+| -..+..+.+++..-|.+|..|-|--. -.+.+.+++. |+..|+.|+|+- ...|++.+
T Consensus 101 ivlM~Y~Npi~~y-----G~e~F~~~~~~aGvdGlIIpDLP~EE~~~~~~~~~~~--gi~~I~LiaPtT---~~eRi~~I 170 (285)
T PRK13120 101 VVLMGYANPIERM-----GQRAFAQAAQAAGVDGVLVVDYPPEEVDEFAAMLAEA--GVAPIFLLAPTS---TEARIEAI 170 (285)
T ss_pred EEEEEHHHHHHHH-----HHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHC--CCCEEEEECCCC---CHHHHHHH
T ss_conf 8986105499998-----7999999999839877964799979999999999966--996589957999---89999999
Q ss_pred HHHHH
Q ss_conf 99998
Q gi|254780767|r 137 CAYIN 141 (383)
Q Consensus 137 ~~~~d 141 (383)
.+...
T Consensus 171 ~~~s~ 175 (285)
T PRK13120 171 GRVAR 175 (285)
T ss_pred HHHCC
T ss_conf 95089
No 124
>PRK13113 consensus
Probab=83.55 E-value=3.4 Score=21.19 Aligned_cols=121 Identities=19% Similarity=0.331 Sum_probs=71.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC---------CHHHHHCCCEEE---------EC----------HHH
Q ss_conf 99997682147899999999997389983999971---------789994788065---------04----------445
Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG---------GPSLQKEGLVSL---------FD----------FSE 57 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG---------G~~m~~~G~~~~---------~~----------~~~ 57 (383)
-|+.+|.++=+.- -.++++|.+. + +.+.=+| ||--|++....+ ++ -..
T Consensus 21 ~yitaG~P~~e~s-~~~~~~l~~~-G--aDiiElGiPFSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~v~~~r~~~~~~P 96 (263)
T PRK13113 21 AYVMAGDPDYDTS-LEVMRGLPAA-G--VDIIELGMPFTDPMADGPTIQLAGQRALEGGMTLDRTLDMVRAFRKEDDTTP 96 (263)
T ss_pred EEECCCCCCHHHH-HHHHHHHHHC-C--CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 8873828997999-9999999976-9--9999978988887765899999999999779838899999997512389988
Q ss_pred CCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHH
Q ss_conf 3110136746645999999999986100128886898511776-579999866301346311110022110036635579
Q gi|254780767|r 58 LSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKM 136 (383)
Q Consensus 58 l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~ 136 (383)
+-+||.+..+.++ -.++..+.+++..-|.+|.+|-|-= .-.+.+.+++. |+..|++|+|+- .+.|++++
T Consensus 97 ivlM~Y~N~i~~~-----G~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~--~l~~I~lvaPtt---~~~Ri~~i 166 (263)
T PRK13113 97 IVMMGYYNPIYSR-----GVDRFLAEAKEAGIDGLIVVDLPPEEDSELCLPAQAA--GLNFIRLATPTT---DDRRLPKV 166 (263)
T ss_pred EEEEECHHHHHHH-----HHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC--CCCEEEEECCCC---CHHHHHHH
T ss_conf 8998313689885-----6999999987779436971799978889999999977--986799947999---99999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780767|r 137 CAYI 140 (383)
Q Consensus 137 ~~~~ 140 (383)
.+..
T Consensus 167 ~~~a 170 (263)
T PRK13113 167 LQNT 170 (263)
T ss_pred HHCC
T ss_conf 8338
No 125
>PRK13124 consensus
Probab=83.48 E-value=3.3 Score=21.36 Aligned_cols=121 Identities=21% Similarity=0.313 Sum_probs=68.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC---------CHHHHHCCCEEE---------EC----H-----HHC
Q ss_conf 99997682147899999999997389983999971---------789994788065---------04----4-----453
Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG---------GPSLQKEGLVSL---------FD----F-----SEL 58 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG---------G~~m~~~G~~~~---------~~----~-----~~l 58 (383)
-|+.+|-++=|.- .+++++|-+. + +.+.=+| ||--|++.-+.+ ++ + ..+
T Consensus 13 ~yitaG~P~~e~s-~~~~~~l~~~-G--aDiiElGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~~~~pi 88 (257)
T PRK13124 13 PFITAGDPDPETT-IDLVLALEEA-G--ADILELGIPYSDPLADGPVIQRASKRALNGGMNIVKAMELVGKMRKKVTIPI 88 (257)
T ss_pred EEECCCCCCHHHH-HHHHHHHHHC-C--CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCE
T ss_conf 8863708998999-9999999976-9--9999978988887765799999999999769968999999998524478888
Q ss_pred CEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHH-HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHH
Q ss_conf 1101367466459999999999861001288868985117-765799998663013463111100221100366355799
Q gi|254780767|r 59 SVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNP-DFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMC 137 (383)
Q Consensus 59 ~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~p-gFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~ 137 (383)
=+||.+..+-++ -.++..+.+++..-|.+|..|-| +-.-.+.+.+++. |+..|++|+|+- ..|++.+.
T Consensus 89 vlM~Y~N~i~~~-----G~e~F~~~~~~~Gv~GvIipDLP~eE~~~~~~~~~~~--gl~~I~lvaPTs----~~Ri~~i~ 157 (257)
T PRK13124 89 VYFTYYNPVLQY-----GLEKFFALARENGIDGLLIPDLPLEESGELQEICDKY--GIYLIPLVAPTS----KERIKKIA 157 (257)
T ss_pred EEEEHHHHHHHH-----HHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHC--CCCEEEEECCCC----HHHHHHHH
T ss_conf 997500789875-----7999999999759984777899979999999999866--873578847996----79999998
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254780767|r 138 AYIN 141 (383)
Q Consensus 138 ~~~d 141 (383)
+..+
T Consensus 158 ~~s~ 161 (257)
T PRK13124 158 EQAE 161 (257)
T ss_pred HCCC
T ss_conf 5489
No 126
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=83.24 E-value=2.1 Score=22.62 Aligned_cols=121 Identities=18% Similarity=0.298 Sum_probs=67.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC---------CHHHHHCCCEEE-------------ECH-----HHC
Q ss_conf 99997682147899999999997389983999971---------789994788065-------------044-----453
Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG---------GPSLQKEGLVSL-------------FDF-----SEL 58 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG---------G~~m~~~G~~~~-------------~~~-----~~l 58 (383)
-|+.+|-+|=|.- -.++++|.+. ++.+.=+| ||--|.+....+ ..+ ..+
T Consensus 4 ~y~taG~P~~~~~-~~~~~~l~~~---G~d~iEiGiPfsDP~aDGpvIq~A~~~aL~~g~~~~~~~~~~~~~r~~~~~pi 79 (242)
T cd04724 4 PYITAGDPDLETT-LEILKALVEA---GADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPI 79 (242)
T ss_pred EEEECCCCCHHHH-HHHHHHHHHC---CCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 7873778997999-9999999976---99999978998887765899999999999769949999999999873479888
Q ss_pred CEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHH
Q ss_conf 110136746645999999999986100128886898511776-5799998663013463111100221100366355799
Q gi|254780767|r 59 SVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMC 137 (383)
Q Consensus 59 ~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~ 137 (383)
-+||.+..+.++ -.++..+.+++..-|.+|..|-|-- .-.+...+++. |+..|.+|+|+- .+.|++.+.
T Consensus 80 vlM~Y~N~i~~~-----G~e~F~~~~~~~Gv~GviipDLP~ee~~~~~~~~~~~--~i~~I~lvsPtt---~~~ri~~i~ 149 (242)
T cd04724 80 VLMGYYNPILQY-----GLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEY--GLDLIFLVAPTT---PDERIKKIA 149 (242)
T ss_pred EEEEECHHHHHH-----CHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC--CCEEEEEECCCC---CHHHHHHHH
T ss_conf 999844576652-----8999999999759975870699957846899999865--983889968988---789999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780767|r 138 AYI 140 (383)
Q Consensus 138 ~~~ 140 (383)
+..
T Consensus 150 ~~s 152 (242)
T cd04724 150 ELA 152 (242)
T ss_pred HHC
T ss_conf 747
No 127
>PRK13118 consensus
Probab=82.87 E-value=2.9 Score=21.74 Aligned_cols=58 Identities=17% Similarity=0.246 Sum_probs=33.4
Q ss_pred HHHHHHHCCCCCCCEEEEECHHH-HHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 99998610012888689851177-6579999866301346311110022110036635579999
Q gi|254780767|r 77 INQTVELIVSSKPDVLLIVDNPD-FTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAY 139 (383)
Q Consensus 77 ~~~~~~~i~~~~Pd~vi~iD~pg-Fnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~ 139 (383)
.++..+.+++..-|.+|..|-|- -+-.+.+.+++. |+..|++|+|+- .+.|++.+.+.
T Consensus 111 ~e~F~~~~~~~GvdGvIipDLP~ee~~~~~~~~~~~--gl~~I~lvaPtt---~~~Ri~~i~~~ 169 (269)
T PRK13118 111 YERFVAQAKEAGVDGLILVDLPPEEADELRAPAQAH--GLDFIRLTSPTT---SDERLPRVLEH 169 (269)
T ss_pred HHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHC--CCCHHEEECCCC---CHHHHHHHHHC
T ss_conf 999999999859974645899978999999999975--984640369898---78999999843
No 128
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=82.23 E-value=2.8 Score=21.84 Aligned_cols=124 Identities=19% Similarity=0.248 Sum_probs=70.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEE-------CCHHHHHCCCEEE---------EC----H-----HHCCE
Q ss_conf 9999768214789999999999738998399997-------1789994788065---------04----4-----45311
Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGV-------GGPSLQKEGLVSL---------FD----F-----SELSV 60 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~gi-------GG~~m~~~G~~~~---------~~----~-----~~l~v 60 (383)
-|+.||-++=|.- .+++++|-+. +-|+-=.|+ -||--|.+....+ ++ + ..+-+
T Consensus 19 ~y~taG~P~~e~s-~~~~~~l~~~-GaDiiElGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~v~~~r~~~~~Pivl 96 (263)
T CHL00200 19 PFITAGDPDIVIT-KKALKILDKK-GADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVI 96 (263)
T ss_pred EEECCCCCCHHHH-HHHHHHHHHC-CCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 8870738987899-9999999976-9999997898888666589999999999977987778999999986067998899
Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHH-HHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 013674664599999999998610012888689851177-6579999866301346311110022110036635579999
Q gi|254780767|r 61 IGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPD-FTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAY 139 (383)
Q Consensus 61 ~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pg-Fnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~ 139 (383)
||.+..+.++. .++..+.+++..-|.+|.+|-|- -.-.+...+++. |+..|++|+|+- .+.|++++.+.
T Consensus 97 MtY~N~i~~yG-----~e~F~~~~~~~GvdGlIipDLP~eE~~~~~~~~~~~--gl~~I~lvaPtt---~~~Ri~~i~~~ 166 (263)
T CHL00200 97 FTYYNPVLHYG-----INKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLY--NIELILLIAPTS---SKSRIQKIARA 166 (263)
T ss_pred EEEHHHHHHCC-----HHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHC--CCCEEEEECCCC---CHHHHHHHHHH
T ss_conf 86206888738-----899999999849986874799978889999999855--862166647899---69999999972
Q ss_pred HH
Q ss_conf 98
Q gi|254780767|r 140 IN 141 (383)
Q Consensus 140 ~d 141 (383)
.+
T Consensus 167 a~ 168 (263)
T CHL00200 167 AP 168 (263)
T ss_pred CC
T ss_conf 89
No 129
>PRK13121 consensus
Probab=82.20 E-value=3.4 Score=21.26 Aligned_cols=124 Identities=19% Similarity=0.305 Sum_probs=66.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEE-------CCHHHHHC-------CCEE--EEC----H------HHCC
Q ss_conf 9999768214789999999999738998399997-------17899947-------8806--504----4------4531
Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGV-------GGPSLQKE-------GLVS--LFD----F------SELS 59 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~gi-------GG~~m~~~-------G~~~--~~~----~------~~l~ 59 (383)
-|+.+|-+|=|.- -.++++|.+. +-|+-=.|+ -||--|++ |.+. +++ + ..+-
T Consensus 21 ~y~taG~P~~~~s-~~~~~~l~~~-GaDiiElGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~~Piv 98 (265)
T PRK13121 21 PFITAGDPDPAKT-VELMHALVEG-GADVIELGVPFSDPMADGPVIQRASERALAHGVSLRQVLAMVKEFRETNQTTPVV 98 (265)
T ss_pred EEEECCCCCHHHH-HHHHHHHHHC-CCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEE
T ss_conf 8870718998999-9999999976-9999997898899776589999999999977998467799999831037999989
Q ss_pred EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHH
Q ss_conf 10136746645999999999986100128886898511776-57999986630134631111002211003663557999
Q gi|254780767|r 60 VIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCA 138 (383)
Q Consensus 60 v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~ 138 (383)
+||.++.+.++. .++..+.+++..-|.+|.+|.|-= .-.+.+.+++. |+..|..|+|+- .+.|++++.+
T Consensus 99 lM~Y~N~i~~yG-----~e~F~~~~~~aGvdGlIipDLP~eE~~~~~~~~~~~--gl~~I~lvaPtt---~~~Ri~~i~~ 168 (265)
T PRK13121 99 LMGYANPIERMG-----YDAFAAAARAAGVDGVLVVDYPPEECEEFAAKMRAA--GIDPIFLLAPTS---TDERIAAVAR 168 (265)
T ss_pred EEEHHHHHHHHH-----HHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHC--CCCEEEEECCCC---CHHHHHHHHH
T ss_conf 862145999971-----999999998729873434899989999999999865--996689958999---8999999996
Q ss_pred HHH
Q ss_conf 998
Q gi|254780767|r 139 YIN 141 (383)
Q Consensus 139 ~~d 141 (383)
..+
T Consensus 169 ~~~ 171 (265)
T PRK13121 169 VAS 171 (265)
T ss_pred HCC
T ss_conf 289
No 130
>pfam00318 Ribosomal_S2 Ribosomal protein S2.
Probab=82.02 E-value=3.1 Score=21.49 Aligned_cols=19 Identities=37% Similarity=0.588 Sum_probs=12.7
Q ss_pred HHHHHHHHCCCEEEECCCC
Q ss_conf 6688876275302540577
Q gi|254780767|r 278 VILELALCGIPVVSIYKSE 296 (383)
Q Consensus 278 aTLE~al~g~P~IV~Yk~~ 296 (383)
|..||..+|+|.|-+-.++
T Consensus 152 ai~Ea~~l~IP~I~ivDTn 170 (205)
T pfam00318 152 AIKEASKLGIPVIAIVDTN 170 (205)
T ss_pred HHHHHHHCCCCEEEECCCC
T ss_conf 9999987599756540599
No 131
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=82.01 E-value=2.6 Score=22.03 Aligned_cols=122 Identities=18% Similarity=0.292 Sum_probs=64.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC---------CHHHHHCCCEEEE-------------CH-----HHC
Q ss_conf 99997682147899999999997389983999971---------7899947880650-------------44-----453
Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG---------GPSLQKEGLVSLF-------------DF-----SEL 58 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG---------G~~m~~~G~~~~~-------------~~-----~~l 58 (383)
-|+.+|-+|=|.- .+++++|.+. +-| +.=+| ||--|++....+- .+ ..+
T Consensus 13 ~y~taG~P~~e~~-~~~~~~l~~~-Gad--~iEiGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~f~~~~~~r~~~~~pi 88 (256)
T PRK13111 13 PYITAGDPDLETS-LEILKALVEA-GAD--IIELGIPFSDPVADGPVIQRASLRALAAGVTLADVLELLREIRAKPTIPI 88 (256)
T ss_pred EEEECCCCCHHHH-HHHHHHHHHC-CCC--EEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCE
T ss_conf 8870708998999-9999999965-999--99978887887665799999999999779969999999999860689988
Q ss_pred CEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHH
Q ss_conf 110136746645999999999986100128886898511776-5799998663013463111100221100366355799
Q gi|254780767|r 59 SVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMC 137 (383)
Q Consensus 59 ~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~ 137 (383)
-+||.+..+-++. .++..+.+++..-|.+|..|-|-= .-.+.+.++++ |+..|+.|+|+- .+.|++.+.
T Consensus 89 vlM~Y~N~i~~~G-----~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~--gi~~I~lvaPtt---~~~Ri~~i~ 158 (256)
T PRK13111 89 VLMTYYNPIFQYG-----VEAFAADAAEAGVDGLIIPDLPPEEAEEFRAAAKKH--GIDLIFLVAPTT---TDERLKKIA 158 (256)
T ss_pred EEEEECCHHHHHC-----HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC--CCEEEEEECCCC---CHHHHHHHH
T ss_conf 9985030898709-----999999999759977981699978889999999975--980899969999---889999999
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254780767|r 138 AYIN 141 (383)
Q Consensus 138 ~~~d 141 (383)
+..+
T Consensus 159 ~~s~ 162 (256)
T PRK13111 159 SHAS 162 (256)
T ss_pred HHCC
T ss_conf 6269
No 132
>PRK03367 consensus
Probab=81.74 E-value=4.2 Score=20.65 Aligned_cols=105 Identities=18% Similarity=0.333 Sum_probs=57.3
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHH-----HHCCCEEEE-CH-----------HHCCEEEH
Q ss_conf 98745999976821478999999999973899839999717899-----947880650-44-----------45311013
Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSL-----QKEGLVSLF-DF-----------SELSVIGI 63 (383)
Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m-----~~~G~~~~~-~~-----------~~l~v~G~ 63 (383)
|++-||.|+.|+++| .|-.++-.+.++ ....++.-+|.+.. +..|+..-+ .+ ..+.+.-+
T Consensus 2 m~~~~IaIT~GDPaG--IGPEIi~kl~~~-~~~~~~iv~gd~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 78 (329)
T PRK03367 2 VKNQRVVITPGEPAG--IGPDLVVQLAQR-EWPVELVVCADPALLTDRAAMLGLPLTLRPYSPDQPAQPQTAGTLTLLPV 78 (329)
T ss_pred CCCCCEEEECCCCCH--HHHHHHHHHHHC-CCCCCEEEEECHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEEEEECC
T ss_conf 989978998788753--189999999700-68988899978999999999759994588738876566465883478616
Q ss_pred HH---H------HHHHHHHHHHHHHHHHHCCCCCCCEEEE------------ECHHHHHHHHHHHH
Q ss_conf 67---4------6645999999999986100128886898------------51177657999986
Q gi|254780767|r 64 MQ---V------VRHLPQFIFRINQTVELIVSSKPDVLLI------------VDNPDFTHRVAKRV 108 (383)
Q Consensus 64 ~e---v------l~~~~~~~~~~~~~~~~i~~~~Pd~vi~------------iD~pgFnl~lak~l 108 (383)
.. + -.+-...++.++...+.+++.+.|++|+ ..|||-.--||++.
T Consensus 79 ~~~~~~~~G~~s~~~g~~~~~~l~~Av~~~~~g~~~alVTaPInK~~i~~aG~~f~GHTE~La~~~ 144 (329)
T PRK03367 79 ALRAPVTPGQLAVENGHYVVETLARACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERS 144 (329)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 767788889728899999999999999999829878999774158999868999898399999986
No 133
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=81.59 E-value=1.6 Score=23.44 Aligned_cols=41 Identities=32% Similarity=0.696 Sum_probs=27.9
Q ss_pred HHHHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE
Q ss_conf 986100128886898-5117765-7999986630134631111
Q gi|254780767|r 80 TVELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 80 ~~~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383)
..+.+.+++||++|+ +.-||.| +.+++.+|+..+.+|+|-.
T Consensus 33 al~~~~~~~~dlvi~D~~mP~~~G~el~~~ir~~~~~~pvI~l 75 (113)
T cd00156 33 ALALLAEEKPDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFL 75 (113)
T ss_pred HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 9999875799999977999898726999999985899959999
No 134
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=81.31 E-value=3.6 Score=21.09 Aligned_cols=27 Identities=4% Similarity=0.089 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 466459999999999861001288868
Q gi|254780767|r 66 VVRHLPQFIFRINQTVELIVSSKPDVL 92 (383)
Q Consensus 66 vl~~~~~~~~~~~~~~~~i~~~~Pd~v 92 (383)
+-.+|+.+-+.-+++.+.|.+++.++.
T Consensus 7 I~~~~~~Lt~~Ek~IA~yIl~n~~~v~ 33 (282)
T PRK11557 7 IRQRYPGLAQSDRKLADYLLLQPDTAR 33 (282)
T ss_pred HHHHHHHCCHHHHHHHHHHHCCHHHHH
T ss_conf 999885449999999999980989997
No 135
>PRK06180 short chain dehydrogenase; Provisional
Probab=81.30 E-value=4.3 Score=20.55 Aligned_cols=35 Identities=29% Similarity=0.326 Sum_probs=27.5
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 9874599997682147899999999997389983999971
Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG 40 (383)
Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG 40 (383)
|++||..+++|-.|| +|..+.+.+-++ +.++.+.+
T Consensus 1 M~~~KvvlITGassG--IG~aiA~~l~~~---G~~Vi~~~ 35 (277)
T PRK06180 1 MASMKTWLITGVSSG--FGRALAQAALAA---GHRVVGTV 35 (277)
T ss_pred CCCCCEEEECCCCCH--HHHHHHHHHHHC---CCEEEEEE
T ss_conf 999988999178739--999999999987---99999998
No 136
>PRK13127 consensus
Probab=81.19 E-value=3.5 Score=21.12 Aligned_cols=120 Identities=18% Similarity=0.295 Sum_probs=65.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC---------CHHHHHCCCEEEEC---H---------------HHC
Q ss_conf 99997682147899999999997389983999971---------78999478806504---4---------------453
Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG---------GPSLQKEGLVSLFD---F---------------SEL 58 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG---------G~~m~~~G~~~~~~---~---------------~~l 58 (383)
-|+.||-++=|.- ..++++|-+. + +.+.=+| ||--|++....+-+ + ..+
T Consensus 15 ~yitaG~P~~e~t-~~~l~~l~~~-G--aDiiElGiPfSDP~ADGPvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~pi 90 (262)
T PRK13127 15 PYLVAGDPDPEAT-LEFVKALVKG-G--ADVIELGIPFSDPVADGPTIQAADVRALSAGMKIDKYFELVKELRVDSSVPL 90 (262)
T ss_pred EEECCCCCCHHHH-HHHHHHHHHC-C--CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCE
T ss_conf 8862708998999-9999999976-9--9999978988887765799999999999769979999999999745699887
Q ss_pred CEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHH
Q ss_conf 110136746645999999999986100128886898511776-5799998663013463111100221100366355799
Q gi|254780767|r 59 SVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMC 137 (383)
Q Consensus 59 ~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~ 137 (383)
=+||.+..+.++ -.++..+.+++..-|.+|..|-|-= .-.+.+.+++. |+..|.+|+|+- .+.|++++.
T Consensus 91 vlM~Y~N~i~~~-----G~e~F~~~~~~~GvdGlIipDLP~eE~~~~~~~~~~~--gi~~I~lvaPtt---~~~Ri~~i~ 160 (262)
T PRK13127 91 VLMTYYNPVYRY-----GVEKFVKKAAEAGVSGLIIPDLPVEEATDLREACKKH--GLDLVFLVAPTT---PEERLKRID 160 (262)
T ss_pred EEEECCHHHHHC-----CHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC--CCEEEEEECCCC---CHHHHHHHH
T ss_conf 999661388760-----8999999998759976996699978999999999855--832799858999---899999998
Q ss_pred HH
Q ss_conf 99
Q gi|254780767|r 138 AY 139 (383)
Q Consensus 138 ~~ 139 (383)
+.
T Consensus 161 ~~ 162 (262)
T PRK13127 161 EA 162 (262)
T ss_pred HC
T ss_conf 43
No 137
>PRK13123 consensus
Probab=81.18 E-value=2.7 Score=21.91 Aligned_cols=124 Identities=23% Similarity=0.278 Sum_probs=69.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEE-------CCHHHHHCCCEEEEC---H-------------HHCCEEE
Q ss_conf 9999768214789999999999738998399997-------178999478806504---4-------------4531101
Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGV-------GGPSLQKEGLVSLFD---F-------------SELSVIG 62 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~gi-------GG~~m~~~G~~~~~~---~-------------~~l~v~G 62 (383)
-|+.||.+|=|.- ..++++|-+. +-|+-=.|+ -||--|.+....+-+ + ..+=+||
T Consensus 19 ~yitaG~P~~~~~-~~~i~~l~~~-GaDiiElGiPFSDPvADGPvIq~A~~rAL~~G~~~~~~~~~~~~~~~~~PivlMt 96 (256)
T PRK13123 19 PYIMAGDGGLDGL-KETIRFLEEA-GVSAIEIGIPFSDPVADGPVIQLAGLRALASGVSLKAILQALIEKETQIPLVIMT 96 (256)
T ss_pred EEECCCCCCHHHH-HHHHHHHHHC-CCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEE
T ss_conf 8861868997899-9999999976-9999997899888666579999989999867996999998876305799889740
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 36746645999999999986100128886898511776-57999986630134631111002211003663557999998
Q gi|254780767|r 63 IMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYIN 141 (383)
Q Consensus 63 ~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d 141 (383)
.+.++.+|. .++..+.+++..-|.+|..|-|-- .-.+.+.+++. |+..|+.|+|+- .+.|++.+.+..+
T Consensus 97 Y~N~i~~yG-----~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~--gi~~I~liaPtt---~~~Ri~~i~~~a~ 166 (256)
T PRK13123 97 YINPVFQYG-----IERFVEDLAETGVKGLIIPDLPYEHQDFIAPLLRDT--DIALIPLVSLTS---PIERQKEIIKEAE 166 (256)
T ss_pred HHHHHHHCC-----HHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHC--CCCEEEECCCCC---CHHHHHHHHHCCC
T ss_conf 425898718-----999999999749978973799967899999999976--997786408999---3889999986078
No 138
>PRK13138 consensus
Probab=81.15 E-value=2.5 Score=22.14 Aligned_cols=121 Identities=19% Similarity=0.220 Sum_probs=58.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC---------CHHHHHCCCEEE---------EC----H------HH
Q ss_conf 99997682147899999999997389983999971---------789994788065---------04----4------45
Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG---------GPSLQKEGLVSL---------FD----F------SE 57 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG---------G~~m~~~G~~~~---------~~----~------~~ 57 (383)
-|+.||.++=|.- ..++++|-+. + +.+.=+| ||--|++....+ ++ + ..
T Consensus 17 ~yitaG~P~~e~t-~~~~~~l~~~-G--adiiEiGiPFSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~p 92 (264)
T PRK13138 17 PYISLGDPDYDSC-IIWADALIRG-G--AGILELGIPFSDPVADGPVIQKAFKRALAHPFSMDKILEITAEIHKLHPEIP 92 (264)
T ss_pred EEECCCCCCHHHH-HHHHHHHHHC-C--CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 8867879998999-9999999977-9--9989979988886665899999999999779908897446776033589888
Q ss_pred CCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHH---HHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHH
Q ss_conf 311013674664599999999998610012888689851177---65799998663013463111100221100366355
Q gi|254780767|r 58 LSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPD---FTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRAR 134 (383)
Q Consensus 58 l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pg---Fnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k 134 (383)
+=.||....+.++. .++..+.+++..-|.+|..|-|- -.-.+...+++. |+..|++|+|+- .+.|++
T Consensus 93 ivlM~Y~N~i~~~G-----~e~F~~~~~~~GvdGlIipDLP~e~~E~~~~~~~~~~~--~i~~I~liaPtt---~~~Ri~ 162 (264)
T PRK13138 93 LVYLTYFNPLFSMG-----LEAFTERAKNSGIQGLIIPDLPFDTPEAEEFFSQLERK--KIDFIHLVTPAT---TEDRIQ 162 (264)
T ss_pred EEEEEEHHHHHHHC-----HHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHC--CCCEEEECCCCC---CHHHHH
T ss_conf 89752123898848-----99999999876977585368986503359999999986--998675217999---899999
Q ss_pred HHHHHH
Q ss_conf 799999
Q gi|254780767|r 135 KMCAYI 140 (383)
Q Consensus 135 ~~~~~~ 140 (383)
.+.+..
T Consensus 163 ~i~~~s 168 (264)
T PRK13138 163 SMKSFA 168 (264)
T ss_pred HHHHHC
T ss_conf 999738
No 139
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=80.85 E-value=3.5 Score=21.18 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 674664599999999998610012888689851177657999986630134631111
Q gi|254780767|r 64 MQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 64 ~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~y 120 (383)
+..+.+--.+....+.+.+.+...++|.+++||+-||-+--+=..+ .++|.+-.
T Consensus 26 tpll~dp~~~~~~~~~l~~~~~~~~vD~IvgiEarGfi~a~alA~~---l~~p~v~i 79 (174)
T PRK02304 26 TPLLADPEALREVIDALVERYKDADIDKIVGIEARGFIFGAALAYK---LGIGFVPV 79 (174)
T ss_pred HHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEECCHHHHHH---HCCCEEEE
T ss_conf 2476599999999999999843489989999865552101588998---29987999
No 140
>PRK13135 consensus
Probab=80.77 E-value=4.4 Score=20.50 Aligned_cols=122 Identities=19% Similarity=0.270 Sum_probs=61.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC---------CHHHHHCCCEEEEC---H---------------HHC
Q ss_conf 99997682147899999999997389983999971---------78999478806504---4---------------453
Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG---------GPSLQKEGLVSLFD---F---------------SEL 58 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG---------G~~m~~~G~~~~~~---~---------------~~l 58 (383)
-|+.||-+|=|.- ..++++|.+. + +.+.=+| ||--|.+....+-+ + ..+
T Consensus 21 ~yitaG~P~~~~s-~~~l~~l~~~-G--aDiiElGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~Pi 96 (267)
T PRK13135 21 TFITAGDPDLATT-EALIPLLAES-G--ADIIELGVPFSDPMADGPTIQLSSERALAAGTTLPRILAMVRSVRRRCQVPI 96 (267)
T ss_pred EEECCCCCCHHHH-HHHHHHHHHC-C--CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCE
T ss_conf 8871718998999-9999999975-9--9999978998986665899999999999769849999999998633589988
Q ss_pred CEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHH
Q ss_conf 110136746645999999999986100128886898511776-5799998663013463111100221100366355799
Q gi|254780767|r 59 SVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMC 137 (383)
Q Consensus 59 ~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~ 137 (383)
=+||.+..+.+| -.++..+.+++..-|.+|.+|-|-= .-.+...+++. |+..|++|+|+- .+.|++++.
T Consensus 97 vlM~Y~N~i~~y-----G~e~F~~~~~~~GvdGlIipDLP~ee~~~~~~~~~~~--~l~~I~lvsPtt---~~~Ri~~i~ 166 (267)
T PRK13135 97 VLMGYYNPIFAY-----GLERFAADAAAAGVDGVLLVDLPPEEAEEFKACADRH--GLDVIFLLTPTS---DESRIRTVA 166 (267)
T ss_pred EEEECCHHHHHH-----HHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHC--CCCEEEEECCCC---CHHHHHHHH
T ss_conf 998423099884-----6899999999749974763789978889999999872--961899808989---579999999
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254780767|r 138 AYIN 141 (383)
Q Consensus 138 ~~~d 141 (383)
+..+
T Consensus 167 ~~s~ 170 (267)
T PRK13135 167 RLGR 170 (267)
T ss_pred HCCC
T ss_conf 6189
No 141
>PRK13119 consensus
Probab=80.76 E-value=4.5 Score=20.43 Aligned_cols=122 Identities=18% Similarity=0.302 Sum_probs=59.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEE------C-CHHHHHCCCEEE---------EC----H------HHCC
Q ss_conf 9999768214789999999999738998399997------1-789994788065---------04----4------4531
Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGV------G-GPSLQKEGLVSL---------FD----F------SELS 59 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~gi------G-G~~m~~~G~~~~---------~~----~------~~l~ 59 (383)
-|+.||-++=|.- ..++++|-+. +-|+-=.|+ . ||--|++....+ ++ + ..+-
T Consensus 19 ~yltaG~P~~e~s-~~~l~~l~~~-GadiiElGiPFSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~piv 96 (261)
T PRK13119 19 PYITVGDPDIRTT-LALMHGMVAN-GADILELGVPFSDPMADGPVIQRAAERALANGISLRDVLDVVRKFRETDTQTPVV 96 (261)
T ss_pred EEECCCCCCHHHH-HHHHHHHHHC-CCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEE
T ss_conf 8864838998999-9999999966-9999997898888666589999999999977997889999999865148998989
Q ss_pred EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHH
Q ss_conf 10136746645999999999986100128886898511776-57999986630134631111002211003663557999
Q gi|254780767|r 60 VIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCA 138 (383)
Q Consensus 60 v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~ 138 (383)
+||...++.++ -.++..+.+++..-|.+|..|-|-- .-.+.+.+++. |+..|..|+|+- .+.|++++.+
T Consensus 97 lMtY~N~i~~y-----G~e~F~~~~~~~GvdGvIipDLP~ee~~~~~~~~~~~--gl~~I~lvaPtt---~~~Ri~~i~~ 166 (261)
T PRK13119 97 LMGYLNPVHKM-----GYREFAQEAAKAGVDGVLTVDSPVETIDPLYRELKDN--GVDCIFLIAPTT---TEDRIKTIAE 166 (261)
T ss_pred EEECHHHHHHH-----HHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC--CCCEEEEECCCC---CHHHHHHHHH
T ss_conf 98403789886-----2999999999759857983689978879999999975--997644307999---8999999997
Q ss_pred H
Q ss_conf 9
Q gi|254780767|r 139 Y 139 (383)
Q Consensus 139 ~ 139 (383)
.
T Consensus 167 ~ 167 (261)
T PRK13119 167 L 167 (261)
T ss_pred H
T ss_conf 2
No 142
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=80.75 E-value=1.9 Score=22.95 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=14.3
Q ss_pred CCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEE
Q ss_conf 0128886898-5117765-799998663013463111
Q gi|254780767|r 85 VSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIIN 119 (383)
Q Consensus 85 ~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~ 119 (383)
...+||+|++ +.=||.| +.+.+.+|++.+.+|++-
T Consensus 44 ~~~~pdlvllDi~mP~~~G~e~l~~l~~~~p~~~viv 80 (202)
T PRK09390 44 PGLRFGCVVTDVRMPGIDGIELLRRLKARGSPLPVIV 80 (202)
T ss_pred HCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCEEE
T ss_conf 6579799987799999896079999872289986799
No 143
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=80.21 E-value=4.7 Score=20.31 Aligned_cols=118 Identities=17% Similarity=0.185 Sum_probs=62.4
Q ss_pred CCCCEEEEEE-CCCCHHHHHH--HHHHHHHHHCCCCEEEEEEC-CHH-HHHCCCEEEEC-----HHHCCEEEHH------
Q ss_conf 9874599997-6821478999--99999997389983999971-789-99478806504-----4453110136------
Q gi|254780767|r 1 MNSLKIAVIA-GEISGDLLAG--DLIKSLKEMVSYPINLVGVG-GPS-LQKEGLVSLFD-----FSELSVIGIM------ 64 (383)
Q Consensus 1 m~~mki~i~a-GE~SGD~~~a--~li~~Lk~~~~~~~~~~giG-G~~-m~~~G~~~~~~-----~~~l~v~G~~------ 64 (383)
|+++||-|++ |...-=+.++ .+++++.+. .++.+++|+= |-+ +-......+.+ ...+.-.|=.
T Consensus 1 ms~kriaIlTsGGd~PGlNavIr~vV~~~~~~-~~~~eV~G~~~Gy~GLl~~~~~~l~~~~~~~~~~l~~~GGTiLGSsR 79 (403)
T PRK06555 1 MAKKKVAMLTAGGLAPCLSSAVGGLIERYTDV-APEIEIIAYKSGYQGLLLGDSIEITPAMREKAHLLHRHGGSPIGNSR 79 (403)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHCCCCCEECCHHHHHHHHHHHCCCCCEECCCC
T ss_conf 99888999898776288999999999999861-79849999872148756999550786677777566228977671798
Q ss_pred -------HHHHHH--HHHHHHHHHHHHHCCCCCCCEEEEE---CHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf -------746645--9999999999861001288868985---117765799998663013463111
Q gi|254780767|r 65 -------QVVRHL--PQFIFRINQTVELIVSSKPDVLLIV---DNPDFTHRVAKRVRKKMPNLPIIN 119 (383)
Q Consensus 65 -------evl~~~--~~~~~~~~~~~~~i~~~~Pd~vi~i---D~pgFnl~lak~lkk~~~~ipvi~ 119 (383)
+.+++. +.-....+.+.+.+++...|.++.| |+-.=-.+|++++++++.++++|.
T Consensus 80 ~kl~~~~d~~kr~~~~eg~d~~~~~~e~L~~~gId~L~~IGGDgS~~~A~~La~~~~~~~~~i~VVG 146 (403)
T PRK06555 80 VKLTNAADCVKRGLVKEGEDPLRVAAERLASDGVDILHTIGGDDTNTTAADLAAYLAANGYDLTVVG 146 (403)
T ss_pred CCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 8877753200114431353599999999998299999998880599999999999997399952896
No 144
>TIGR01182 eda 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related . They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=79.95 E-value=1.4 Score=23.72 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=12.5
Q ss_pred CCCCCCHHHHCCCHHHHHHHHHHCCC
Q ss_conf 38743012305111899987640273
Q gi|254780767|r 200 GSRAQEIYKILPFFESAVASLVKRNP 225 (383)
Q Consensus 200 GSR~~EI~~~lP~~l~~~~~l~~~~~ 225 (383)
|=|--||..--|.=+++++.|++++|
T Consensus 33 G~~~~EvTlRT~~A~~aI~~l~~~~P 58 (205)
T TIGR01182 33 GLRVLEVTLRTPVALEAIRALRKEVP 58 (205)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHCC
T ss_conf 98089885147216899999997282
No 145
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=79.86 E-value=4.8 Score=20.24 Aligned_cols=60 Identities=20% Similarity=0.338 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHCCCCCCCEEEE-ECHHHHHHHHHHHHHHH--CCCCCCEEEECCC-CCCCCCCC
Q ss_conf 9999999986100128886898-51177657999986630--1346311110022-11003663
Q gi|254780767|r 73 FIFRINQTVELIVSSKPDVLLI-VDNPDFTHRVAKRVRKK--MPNLPIINYVCPS-VWAWREGR 132 (383)
Q Consensus 73 ~~~~~~~~~~~i~~~~Pd~vi~-iD~pgFnl~lak~lkk~--~~~ipvi~yv~Pq-vWAWr~~R 132 (383)
....+++..+...+.+.+++|+ +|+||=-+.=+..+.+. ...+|++-||.|. -|||-.+-
T Consensus 14 ~~~~l~r~l~~A~~~~a~avvl~idTpGG~v~~~~~I~~~i~~s~vpvi~~V~p~G~~A~SAGa 77 (187)
T cd07020 14 TADYLERAIDQAEEGGADALIIELDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARAASAGT 77 (187)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
T ss_conf 9999999999998689989999985896078999999999981899989998789760771899
No 146
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=79.86 E-value=3.2 Score=21.43 Aligned_cols=101 Identities=19% Similarity=0.197 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCC-EEEEHHHCCCCCCCHHHCCCCCH
Q ss_conf 2035788763552331-----15668887627530254057741000010246761-02302440784261242054898
Q gi|254780767|r 260 QKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWT-CALPNLIVDYPLVPEYFNSMIRS 333 (383)
Q Consensus 260 ~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~-i~LpNii~~~~ivPEliQ~~~~~ 333 (383)
+-++.+..||+.+-.| |=--||++.+|+|+|+. .++.+--|+...+..+. -|. .+.+|.- ...+-+.
T Consensus 467 ~Y~efv~Gc~LgVFPSyYEPWGYTPlE~~a~gvPsITT-dLsGFG~~~~~~~~~~~~~GV--~VvdR~~----~~~~Esv 539 (590)
T cd03793 467 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITT-NLSGFGCFMEEHIEDPESYGI--YIVDRRF----KSPDESV 539 (590)
T ss_pred CHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEC-CCHHHHHHHHHHHCCCCCCCE--EEEECCC----CCHHHHH
T ss_conf 69999645765557653488788869887627980221-660377999986416423747--9997898----9979999
Q ss_pred HHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999999844-9899999999999999983899
Q gi|254780767|r 334 EALVRWIERLSQ-DTLQRRAMLHGFENLWDRMNTK 367 (383)
Q Consensus 334 ~~i~~~~~~ll~-d~~~r~~~~~~~~~~~~~Lg~~ 367 (383)
+.|++.+.++-. +...|.++++...++.+.+...
T Consensus 540 ~~l~~~~~~f~~~s~~qr~~~R~rae~ls~~~dW~ 574 (590)
T cd03793 540 QQLTQYMYEFCQLSRRQRIIQRNRTERLSDLLDWR 574 (590)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHH
T ss_conf 99999999997499999999999999999866899
No 147
>PRK09739 hypothetical protein; Provisional
Probab=79.83 E-value=4.8 Score=20.23 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=24.7
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHH----HHCCCCEEEEE
Q ss_conf 987459999768214789999999999----73899839999
Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLK----EMVSYPINLVG 38 (383)
Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk----~~~~~~~~~~g 38 (383)
|+++||+|+-|-+.-+-..+.|.++.. +. +.++++.-
T Consensus 1 M~~kkiLIV~aHP~~~S~~~ala~~~~~~l~~~-GheV~v~D 41 (201)
T PRK09739 1 MQSERIYLVWAHPRHDSLTAKVADAIHQRAQER-GIQVTELD 41 (201)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEE
T ss_conf 997779999738998656899999999999987-99599997
No 148
>TIGR02015 BchY chlorophyllide reductase subunit Y; InterPro: IPR010245 This entry represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase , . This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.; GO: 0016731 oxidoreductase activity acting on iron-sulfur proteins as donors NAD or NADP as acceptor, 0015979 photosynthesis, 0030494 bacteriochlorophyll biosynthetic process, 0016021 integral to membrane.
Probab=79.78 E-value=0.98 Score=24.79 Aligned_cols=225 Identities=16% Similarity=0.129 Sum_probs=105.2
Q ss_pred CCCCCCCEEEEE-CHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHH--HHCCCCCCCHH---HHHCC
Q ss_conf 001288868985-1177657999986630134631111002211003663557999998--64015677422---32002
Q gi|254780767|r 84 IVSSKPDVLLIV-DNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYIN--QVISILPFEKE---VMQRL 157 (383)
Q Consensus 84 i~~~~Pd~vi~i-D~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d--~~~~ifpFE~~---~f~k~ 157 (383)
-++.+|.++++= =||-=-+-+...|++. |+-..--++-. +| +.+-...| .+..|.||=.. -|+.
T Consensus 163 ~R~~~~t~~lLGEiFPvDa~~Ig~~L~~~--G~~~~~~~P~~-----d~--~~~~~A~~~~~~A~lHPFY~~~~~~F~a- 232 (426)
T TIGR02015 163 SRDDKPTLVLLGEIFPVDAMVIGGLLQPL--GVESGPTVPGR-----DW--RELYAALDSSVVAVLHPFYEATAREFEA- 232 (426)
T ss_pred CCCCCCCEEEECCCCCCCHHHHHHHHHHC--CCEEEECCCCH-----HH--HHHHHHCCCCEEEEECCHHHHHHHHHHH-
T ss_conf 55567617896032463288999898741--84023105732-----08--9999750443466525347999999985-
Q ss_pred CCCCEEECCCCCCCCCCC---------------------CCCHHHHHHHC-CCCCCCCEEEEEECCCCCCHHHHCCCHHH
Q ss_conf 553147638821122100---------------------13558889761-87655650599853874301230511189
Q gi|254780767|r 158 GGPPTTFVGHPLSSSPSI---------------------LEVYSQRNKQR-NTPSQWKKILLLPGSRAQEIYKILPFFES 215 (383)
Q Consensus 158 ~~~~~~fVGHPl~d~~~~---------------------~~~~~~~~~~~-~~~~~~~~I~llPGSR~~EI~~~lP~~l~ 215 (383)
.|.++. =|+|+-.+-.. ...++..+... +....-+-=.++-|=-.+|+ -
T Consensus 233 AG~~iv-Gs~PvG~~~T~~Wl~~IG~Ald~~p~~~~~~~~~~r~~~~g~~AGfa~~~~g~~~v~GYEG~EL--------~ 303 (426)
T TIGR02015 233 AGKKIV-GSAPVGANGTGEWLERIGEALDLDPDTVKTVAEELRKKIKGAIAGFAEPIKGRVTVSGYEGSEL--------L 303 (426)
T ss_pred CCCCEE-CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHH--------H
T ss_conf 696122-5888771158999998655407888899999988668899998501566224689851156268--------8
Q ss_pred HHHHHHHCCCCCEEEECCCC--CHHHHHHHHHHHCCCCCEEEEECCCCHHHHH--HHHHHHCCCHHHHH--HHHHHCCCE
Q ss_conf 99876402735126201663--3688999999604888505520552035788--76355233115668--887627530
Q gi|254780767|r 216 AVASLVKRNPFFRFSLVTVS--SQENLVRCIVSKWDISPEIIIDKEQKKQVFM--TCNAAMAASGTVIL--ELALCGIPV 289 (383)
Q Consensus 216 ~~~~l~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~--~sd~ai~~SGTaTL--E~al~g~P~ 289 (383)
.++.|.+.--++.++--..+ ......+..+...+...+---.-++--.++. .=|++| ||.+| .+=-.|+|.
T Consensus 304 ~~RLL~E~G~dv~Y~~ta~~rT~~~~~D~~~L~~~G~~VkyR~~LE~D~~Av~~f~PDL~I---GTT~l~~~AK~~GiPa 380 (426)
T TIGR02015 304 VVRLLLESGADVPYVGTAIPRTAWGAEDKEWLEALGVEVKYRASLEDDMEAVEEFEPDLAI---GTTPLVQFAKEKGIPA 380 (426)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHCCCCCEEE---ECCCHHHHHHHCCCCE
T ss_conf 8898887077533100135677542667999984795588602236789999616997576---1673567877548961
Q ss_pred EEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 2540577410000102467610230244078426124205489899999999984498999999999
Q gi|254780767|r 290 VSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHG 356 (383)
Q Consensus 290 IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~ 356 (383)
+ |- .|+|+-|+++ ...-+.-++.-+.-++++.+.--+|.+-
T Consensus 381 l--Yf-------------------TN~ISARPl~-----~~aGA~Sl~~~i~~~~~~r~~~g~M~~f 421 (426)
T TIGR02015 381 L--YF-------------------TNLISARPLM-----GPAGAGSLLQVINGALENRERYGRMKEF 421 (426)
T ss_pred E--EH-------------------HHCHHHCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2--11-------------------1011203221-----0001789999999987405676656742
No 149
>pfam00551 Formyl_trans_N Formyl transferase. This family includes the following members. Glycinamide ribonucleotide transformylase catalyses the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function.
Probab=79.01 E-value=2.9 Score=21.73 Aligned_cols=95 Identities=15% Similarity=0.181 Sum_probs=48.6
Q ss_pred CEEEEEE-CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4599997-682147899999999997389983999971789994788065044453110136746645999999999986
Q gi|254780767|r 4 LKIAVIA-GEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVE 82 (383)
Q Consensus 4 mki~i~a-GE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~ 82 (383)
|||.|.+ |.-| -...+++++++. +.++++.+|-.++-.+.|.+. ....++--+.=.-+.+..-...-.++.+
T Consensus 1 mkiavl~SG~Gs---nl~~Il~a~~~~-~l~~~I~~Visn~~~~~~~~~---a~~~~ip~~~~~~~~~~~r~~~~~~~~~ 73 (181)
T pfam00551 1 MKIAVLISGTGS---NLQALLDALRKG-GHEVEIVAVVTNKDKAAGLER---AEQAGIPVEVFEHKNFTPRSQFDSELAD 73 (181)
T ss_pred CEEEEEECCCCH---HHHHHHHHHHHC-CCCCEEEEEEECCCCHHHHHH---HHHCCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf 989999907966---599999999819-999889999958957288889---9985999898067789983461899999
Q ss_pred HCCCCCCCEEEEECHHHHHHHHHHHH
Q ss_conf 10012888689851177657999986
Q gi|254780767|r 83 LIVSSKPDVLLIVDNPDFTHRVAKRV 108 (383)
Q Consensus 83 ~i~~~~Pd~vi~iD~pgFnl~lak~l 108 (383)
.+++.+||++|+.- |+.-+-+..
T Consensus 74 ~l~~~~~Dliv~~g---~~~il~~~~ 96 (181)
T pfam00551 74 SLAALAPDLIVLAG---YMRILPPEF 96 (181)
T ss_pred HHHHHCCCEEEEEC---HHHHCCHHH
T ss_conf 99974999999801---633569789
No 150
>PRK07454 short chain dehydrogenase; Provisional
Probab=78.89 E-value=5.2 Score=20.04 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=25.8
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 9874599997682147899999999997389983999971
Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG 40 (383)
Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG 40 (383)
|++||+-+++|-.|| .|..+.+.|-+. +.++..++
T Consensus 3 ~~~mKvalITGas~G--IG~a~A~~la~~---G~~V~l~~ 37 (241)
T PRK07454 3 LNSMPTALITGASRG--IGKATALAFAKA---GWDLALVA 37 (241)
T ss_pred CCCCCEEEECCCCCH--HHHHHHHHHHHC---CCEEEEEE
T ss_conf 899988999175878--999999999987---99899998
No 151
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=78.42 E-value=1.9 Score=22.91 Aligned_cols=60 Identities=20% Similarity=0.340 Sum_probs=36.3
Q ss_pred HHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 98610012888689851177657999986630134631111002211003663557999998640156774
Q gi|254780767|r 80 TVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFE 150 (383)
Q Consensus 80 ~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE 150 (383)
-.+.+.+-+||+||..+ +..-.....+++. |||++++-.|+-| ..+.+.+..+--+|--|
T Consensus 52 n~E~i~~l~PDLVi~~~--~~~~~~~~~L~~~--gi~v~~~~~~~~~-------~~~~~~i~~lg~i~g~~ 111 (195)
T cd01143 52 NVEKIVALKPDLVIVSS--SSLAELLEKLKDA--GIPVVVLPAASSL-------DEIYDQIELIGKITGAE 111 (195)
T ss_pred CHHHHHCCCCCEEEEEC--CCCHHHHHHHHHC--CCEEEEECCCCCH-------HHHHHHHHHHHHHHCCH
T ss_conf 99999616999999827--8747799998641--8859997589999-------99999999999996974
No 152
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=77.71 E-value=5.6 Score=19.82 Aligned_cols=119 Identities=13% Similarity=0.277 Sum_probs=59.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC---------CHHHHHCCCEEEE---CH------------HHCCEE
Q ss_conf 99997682147899999999997389983999971---------7899947880650---44------------453110
Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG---------GPSLQKEGLVSLF---DF------------SELSVI 61 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG---------G~~m~~~G~~~~~---~~------------~~l~v~ 61 (383)
-|+.||-++=+.-. .++++|.+. +.+.=+| ||--|++..+.+. ++ ..+-.|
T Consensus 9 ~yitaG~P~~e~s~-~~l~~l~~~----aDiiElGiPfSDPvADGpvIq~A~~~Al~~g~~~~~i~~~~r~~~~~pivlM 83 (247)
T PRK13125 9 VYLTAGWPNAETFL-EAIDGLVGL----VDFLELGIPPKNPKYDGPVIRKAHREVSYWGLDYWSLLEEVRKKVGVPTYIM 83 (247)
T ss_pred EEEECCCCCHHHHH-HHHHHHHHC----CCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEH
T ss_conf 88718379989999-999998647----9999979988987666099999999998769989999998505689988972
Q ss_pred EHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHH----HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHH
Q ss_conf 1367466459999999999861001288868985117----765799998663013463111100221100366355799
Q gi|254780767|r 62 GIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNP----DFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMC 137 (383)
Q Consensus 62 G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~p----gFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~ 137 (383)
|...+ +..-.++..+.+++..-|.+|..|-| +=.-.+.+.++++ |+..|.+|+|+- .+.|++.+.
T Consensus 84 ~Y~N~------~~~g~e~F~~~~~~~GvdGvIipDLP~e~~ee~~~~~~~~~~~--gl~~I~lvsPtt---~~~ri~~i~ 152 (247)
T PRK13125 84 TYLED------YVGSLDDLLNTAKEVGARGVLFPDLLIDFPDELEKYVELIRRY--GLAPVFFTSPKF---PDRLIRRLS 152 (247)
T ss_pred HHHHH------HHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEECCCC---CHHHHHHHH
T ss_conf 98899------9976999999999859975883388875467899999999976--984699957998---199999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780767|r 138 AYI 140 (383)
Q Consensus 138 ~~~ 140 (383)
+..
T Consensus 153 ~~s 155 (247)
T PRK13125 153 KLS 155 (247)
T ss_pred HHC
T ss_conf 868
No 153
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=77.68 E-value=5.6 Score=19.81 Aligned_cols=108 Identities=17% Similarity=0.165 Sum_probs=61.0
Q ss_pred HHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHH-HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHH
Q ss_conf 99999997389983999971789994788065044453110136-74664599999999998610012888689851177
Q gi|254780767|r 21 DLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIM-QVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPD 99 (383)
Q Consensus 21 ~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~-evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pg 99 (383)
+.++.|++. + .+-++|.|....-+.-+ ...+..+|.. +.+..... .......-.+-|++|.+.++|
T Consensus 5 ~~~~~i~~a-~-~I~i~G~G~S~~~A~~~-----~~~l~~~g~~~~~~~~~~~------~~~~~~~~~~~d~~i~iS~sg 71 (139)
T cd05013 5 KAVDLLAKA-R-RIYIFGVGSSGLVAEYL-----AYKLLRLGKPVVLLSDPHL------QLMSAANLTPGDVVIAISFSG 71 (139)
T ss_pred HHHHHHHCC-C-EEEEEECCHHHHHHHHH-----HHHHCCCCCEEEECCCHHH------HHHHHHCCCCCCEEEEECCCC
T ss_conf 999999759-9-28999808159999999-----9997258982798796277------888874599999999976863
Q ss_pred H---HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCH
Q ss_conf 6---579999866301346311110022110036635579999986401567742
Q gi|254780767|r 100 F---THRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEK 151 (383)
Q Consensus 100 F---nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~ 151 (383)
. -+++++.+|++ |+|++-.-+ ..-..+.++.|..+.+.--|.
T Consensus 72 ~~~~~~~~~~~ak~~--g~~ii~IT~--------~~~s~l~~~ad~~l~~~~~~~ 116 (139)
T cd05013 72 ETKETVEAAEIAKER--GAKVIAITD--------SANSPLAKLADIVLLVSSEEG 116 (139)
T ss_pred CCHHHHHHHHHHHHC--CCEEEEEEC--------CCCCHHHHHCCEEEECCCCCC
T ss_conf 637899999999986--997999979--------999977996999998288655
No 154
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=77.50 E-value=2.5 Score=22.12 Aligned_cols=42 Identities=17% Similarity=0.282 Sum_probs=31.5
Q ss_pred HHHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEEC
Q ss_conf 86100128886898-5117765-799998663013463111100
Q gi|254780767|r 81 VELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYVC 122 (383)
Q Consensus 81 ~~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv~ 122 (383)
.+.+..++||++|+ +.-||.| +.+.+.+|+....+|+|..-+
T Consensus 42 ~~~~~~~~~DlvilDi~lp~~dG~~l~~~iR~~~~~~pII~LTa 85 (239)
T PRK09468 42 DRLLTRESFHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIMLTA 85 (239)
T ss_pred HHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEEC
T ss_conf 99997589989998789988887346777875057877899946
No 155
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=77.46 E-value=2.5 Score=22.15 Aligned_cols=46 Identities=4% Similarity=-0.030 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 48989999999998449899999999999999983899998999999999861
Q gi|254780767|r 330 MIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAEIVLQVL 382 (383)
Q Consensus 330 ~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~~L 382 (383)
-++-+.|++.+. +.. +....-...+.++||-.. -.+.+.-++..=|
T Consensus 158 G~snkeIA~~L~--iS~----~TV~~h~~~i~~KL~v~~-r~el~~~A~~~~l 203 (204)
T PRK09958 158 GKDNNDIAEKMF--ISN----KTVSTYKSRLMEKLECKS-LMDLYTFAQRNKI 203 (204)
T ss_pred CCCHHHHHHHHC--CCH----HHHHHHHHHHHHHHCCCC-HHHHHHHHHHCCC
T ss_conf 999999998978--899----999999999999848999-9999999998289
No 156
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=77.03 E-value=5.8 Score=19.70 Aligned_cols=63 Identities=16% Similarity=0.302 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEE-ECHHHH----HHHHHHHHHHHCCCCCCEEEECCC-CCCCCCCCHHHH
Q ss_conf 99999999986100128886898-511776----579999866301346311110022-110036635579
Q gi|254780767|r 72 QFIFRINQTVELIVSSKPDVLLI-VDNPDF----THRVAKRVRKKMPNLPIINYVCPS-VWAWREGRARKM 136 (383)
Q Consensus 72 ~~~~~~~~~~~~i~~~~Pd~vi~-iD~pgF----nl~lak~lkk~~~~ipvi~yv~Pq-vWAWr~~R~k~~ 136 (383)
.......+..+...+++-|++|+ +|.||= ..++.+.... ..+|++.||.|+ -|||-.+---.+
T Consensus 40 ~s~~~l~r~l~~A~~~~a~~vvl~ldTPGGl~~sm~~iv~~i~~--s~vPV~~yv~p~ga~AaSAGtyI~m 108 (436)
T COG1030 40 ASADYLQRALQSAEEENAAAVVLELDTPGGLLDSMRQIVRAILN--SPVPVIGYVVPDGARAASAGTYILM 108 (436)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHC--CCCCEEEEECCCCCCHHCHHHHHHH
T ss_conf 79999999999998579847999960897267999999999875--9997799994898511040327988
No 157
>PRK13137 consensus
Probab=76.94 E-value=5.9 Score=19.68 Aligned_cols=123 Identities=16% Similarity=0.200 Sum_probs=64.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEE-------CCHHHHHCCCEEEE---CHH---------------HCCE
Q ss_conf 9999768214789999999999738998399997-------17899947880650---444---------------5311
Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGV-------GGPSLQKEGLVSLF---DFS---------------ELSV 60 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~gi-------GG~~m~~~G~~~~~---~~~---------------~l~v 60 (383)
-|+.||-++=|.-- .++++|.+ +-|+-=.|+ -||--|++....+- .++ .+=.
T Consensus 29 ~yitaG~P~~~~s~-~~~~~l~~--gaDiiElGiPFSDP~ADGPvIQ~A~~~AL~~G~~l~~~l~~~~~~r~~~~~Pivl 105 (266)
T PRK13137 29 PFLTAGYPSAAGFL-QVAEELLA--YADLLEVGIPYSDPLGDGPTIQRASEQALAGGTSTRRTLELVRELRALTDTPLVI 105 (266)
T ss_pred EEECCCCCCHHHHH-HHHHHHHC--CCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEE
T ss_conf 78668188878999-99999973--8998997899888566579999999999977986778999999755568987899
Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 0136746645999999999986100128886898511776-579999866301346311110022110036635579999
Q gi|254780767|r 61 IGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAY 139 (383)
Q Consensus 61 ~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~ 139 (383)
||....+.+ .-.++..+.+++..-|.+|..|-|-= .-.+.+.+++. |+..|+.|+|+- .+.|++.+.+.
T Consensus 106 M~Y~N~i~~-----yG~e~F~~~a~~aGvdGlIipDLP~eE~~~~~~~~~~~--gi~~I~lvaPtT---~~eRi~~i~~~ 175 (266)
T PRK13137 106 MTYLNPIYA-----VGPEEFMRLFQEAGVDGLILPDLPPDQDPEIADLAAEI--GLAVTFLIAPTS---TPERVKLVARA 175 (266)
T ss_pred EECHHHHHH-----HCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC--CCCEEEEECCCC---CHHHHHHHHHH
T ss_conf 934589987-----58999999999769609994799978889999999875--997899937999---99999999960
Q ss_pred HH
Q ss_conf 98
Q gi|254780767|r 140 IN 141 (383)
Q Consensus 140 ~d 141 (383)
.+
T Consensus 176 a~ 177 (266)
T PRK13137 176 CT 177 (266)
T ss_pred CC
T ss_conf 88
No 158
>PRK13129 consensus
Probab=76.48 E-value=6 Score=19.60 Aligned_cols=120 Identities=15% Similarity=0.267 Sum_probs=54.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC---------CHHHHHCCCEEE---------EC----H-----HHC
Q ss_conf 99997682147899999999997389983999971---------789994788065---------04----4-----453
Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG---------GPSLQKEGLVSL---------FD----F-----SEL 58 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG---------G~~m~~~G~~~~---------~~----~-----~~l 58 (383)
-|+.||-+|=|.- ..++++|.+. + +.+.=+| ||--|.+....+ ++ + ..+
T Consensus 23 ~yitaG~P~~e~s-~~~~~~l~~~-G--aDiiEiGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~~~~Pi 98 (267)
T PRK13129 23 PFLMAGDPDLETT-AEALLILQEN-G--ADLIELGIPYSDPLADGPVIQAAATRALQSGTTLEKVLEMLESLKGKLTIPI 98 (267)
T ss_pred EEEECCCCCHHHH-HHHHHHHHHC-C--CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCE
T ss_conf 8870718998999-9999999977-9--9999979988887765899999999999769878999999998543478888
Q ss_pred CEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHH
Q ss_conf 110136746645999999999986100128886898511776-5799998663013463111100221100366355799
Q gi|254780767|r 59 SVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMC 137 (383)
Q Consensus 59 ~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~ 137 (383)
=+||.+..+.++ -.++..+.+++.--|.+|..|-|-= .-.+...+++. |+..|.+|+|+- .+.|++++.
T Consensus 99 vlM~Y~N~i~~~-----G~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~--gl~~I~lvaPtt---~~~Ri~~i~ 168 (267)
T PRK13129 99 ILFTYYNPLLNR-----GMERFCEQAAAAGVAGLVVPDLPLEEAEKLSPIAAER--GIDLILLVAPTT---PAERMKRIA 168 (267)
T ss_pred EEEEEHHHHHHH-----HHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHC--CCEEEEEECCCC---CHHHHHHHH
T ss_conf 998610789885-----5999999998669875767899989999999999853--981689948999---689999998
Q ss_pred HH
Q ss_conf 99
Q gi|254780767|r 138 AY 139 (383)
Q Consensus 138 ~~ 139 (383)
+.
T Consensus 169 ~~ 170 (267)
T PRK13129 169 QQ 170 (267)
T ss_pred HC
T ss_conf 16
No 159
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=76.42 E-value=2.4 Score=22.22 Aligned_cols=77 Identities=17% Similarity=0.269 Sum_probs=50.3
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45999976821478999999999973899839999717899947880650444531101367466459999999999861
Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVEL 83 (383)
Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~ 83 (383)
|||+++--|+. ++..|...|++. ++++.....- .+..+.
T Consensus 1 MkILiVEDd~~---l~~~l~~~L~~~---G~~v~~a~~g-----------------------------------~~a~~~ 39 (226)
T PRK09836 1 MKLLIVEDEKK---TGEYLTKGLTEA---GFVVDLADNG-----------------------------------LNGYHL 39 (226)
T ss_pred CEEEEEECCHH---HHHHHHHHHHHC---CCEEEEECCH-----------------------------------HHHHHH
T ss_conf 98999939999---999999999878---9999998999-----------------------------------999999
Q ss_pred CCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEE
Q ss_conf 00128886898-5117765-79999866301346311110
Q gi|254780767|r 84 IVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYV 121 (383)
Q Consensus 84 i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv 121 (383)
+...+||+||+ +.-||.| +.+++++|+...++|+|..-
T Consensus 40 ~~~~~~DlvilDi~lP~~~G~~l~~~iR~~~~~~PII~Lt 79 (226)
T PRK09836 40 AMTGDYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLT 79 (226)
T ss_pred HHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEEE
T ss_conf 8518999999889999998720435677616796099994
No 160
>PRK10693 response regulator of RpoS; Provisional
Probab=76.07 E-value=3 Score=21.60 Aligned_cols=42 Identities=17% Similarity=0.440 Sum_probs=31.1
Q ss_pred HHHHHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE
Q ss_conf 9986100128886898-5117765-7999986630134631111
Q gi|254780767|r 79 QTVELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 79 ~~~~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383)
+..+.+.+.+||+||+ +.-|+.| +.+.+++|+..+.+|||-.
T Consensus 42 eAl~~l~~~~pDLIi~Dl~MP~mdGlell~~lr~~~~~~PVIvl 85 (337)
T PRK10693 42 DALELLGGFTPDLMICDIAMPRMNGLKFVEHLRNRGDQTPVLVI 85 (337)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 99999865899999996899999989999999985899649999
No 161
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=75.97 E-value=3 Score=21.58 Aligned_cols=72 Identities=28% Similarity=0.533 Sum_probs=48.1
Q ss_pred EEECCHHHHHCCCEEEECHHHCC--EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHC
Q ss_conf 99717899947880650444531--10136746645999999999986100128886898-5117765-79999866301
Q gi|254780767|r 37 VGVGGPSLQKEGLVSLFDFSELS--VIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKM 112 (383)
Q Consensus 37 ~giGG~~m~~~G~~~~~~~~~l~--v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~ 112 (383)
.=+-.+.|-..|++.+.|-..++ ++|= -+.-++..+.+.+.+||+||+ |-=|++| +.+.+.+|+..
T Consensus 5 lIVDDE~lIr~GLk~lI~w~~~g~eiVgt----------A~NG~eAleli~e~~pDiviTDI~MP~mdGLdLI~~ike~~ 74 (475)
T COG4753 5 LIVDDEPLIREGLKSLIDWEALGIEVVGT----------AANGKEALELIQETQPDIVITDINMPGMDGLDLIKAIKEQS 74 (475)
T ss_pred EEECCHHHHHHHHHHHCCHHHCCCEEEEE----------CCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99667299999999848856369757875----------14579999998734997899815788875799999999749
Q ss_pred CCCCCE
Q ss_conf 346311
Q gi|254780767|r 113 PNLPII 118 (383)
Q Consensus 113 ~~ipvi 118 (383)
+.+.+|
T Consensus 75 p~~~~I 80 (475)
T COG4753 75 PDTEFI 80 (475)
T ss_pred CCCEEE
T ss_conf 985399
No 162
>PRK02947 hypothetical protein; Provisional
Probab=75.82 E-value=6.3 Score=19.49 Aligned_cols=193 Identities=20% Similarity=0.209 Sum_probs=95.2
Q ss_pred HHHHHH-HHHHHCCCCEEEEEECCHHHHH-------CCCEEEECHHHCCEEEHHHHHH--HHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999-9997389983999971789994-------7880650444531101367466--45999999999986100128
Q gi|254780767|r 19 AGDLIK-SLKEMVSYPINLVGVGGPSLQK-------EGLVSLFDFSELSVIGIMQVVR--HLPQFIFRINQTVELIVSSK 88 (383)
Q Consensus 19 ~a~li~-~Lk~~~~~~~~~~giGG~~m~~-------~G~~~~~~~~~l~v~G~~evl~--~~~~~~~~~~~~~~~i~~~~ 88 (383)
||.++. ++++ +.-+..+|-|-.+|-+ -|+-...++-+-++|..-.+.+ .+-+.-...+.+.+...-.+
T Consensus 30 Aa~~ia~si~~--gg~i~~fGtGHS~~~a~E~f~RAGGla~~~pI~~~~l~~~~g~~~s~~~ER~~g~a~~il~~~~i~~ 107 (247)
T PRK02947 30 AADLVADSIAN--GGRIYVFGTGHSHMAAEEVFYRAGGLAPFNPILEPSLMLHEGAVASSYLERIEGYAKLILDRYPIRP 107 (247)
T ss_pred HHHHHHHHHHC--CCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHCCCCC
T ss_conf 99999999975--9979998885164899987411476433130034110254786665312225509999998679999
Q ss_pred CCEEEEECHHHHH---HHHHHHHHHHCCCCCCEEEECCCCCCC---CCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCE
Q ss_conf 8868985117765---799998663013463111100221100---3663557999998640156774223200255314
Q gi|254780767|r 89 PDVLLIVDNPDFT---HRVAKRVRKKMPNLPIINYVCPSVWAW---REGRARKMCAYINQVISILPFEKEVMQRLGGPPT 162 (383)
Q Consensus 89 Pd~vi~iD~pgFn---l~lak~lkk~~~~ipvi~yv~PqvWAW---r~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~~~ 162 (383)
-|++|.+-..|-| .-+|..+|++ |.+||=..+-+-=.- |..--|++..++|.++=-
T Consensus 108 ~Dvlii~SnSG~N~~pVE~A~~ak~~--G~~VIaiTS~~~s~~~~srH~SGkkL~d~aDiviDN---------------- 169 (247)
T PRK02947 108 GDVLIIVSNSGRNAVPIEMALEAKER--GAKVIAVTSLAYSKSVASRHSSGKRLYEVADVVIDN---------------- 169 (247)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHC--CCEEEEEECHHHHCCCCCCCCCCCEEHHHCCEEEEC----------------
T ss_conf 98899996787776899999999986--996999966788167899897667115636678657----------------
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCC-EEEECCCCCHHHHH
Q ss_conf 76388211221001355888976187655650599853874301230511189998764027351-26201663368899
Q gi|254780767|r 163 TFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFF-RFSLVTVSSQENLV 241 (383)
Q Consensus 163 ~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~-~~~i~~~~~~~~~~ 241 (383)
+-|.-|-.-..+. . -.-+=|.|--.-.--.--++.+++++|.++.-.. .|.-+..+..++.-
T Consensus 170 ---~~p~GDA~l~i~g---------~-----~~kvgp~STi~g~~i~n~i~~e~~~~L~~~G~~pPv~~S~N~~ggde~N 232 (247)
T PRK02947 170 ---GAPKGDAVLEIEG---------L-----EAKVGPTSTVVGVAILNAIFAEAAEELVERGIDPPVFLSANIDGGDEHN 232 (247)
T ss_pred ---CCCCCCEEEEECC---------C-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHH
T ss_conf ---9998765898789---------7-----7775757789999999999999999999779999867627888838999
Q ss_pred HHHHHHC
Q ss_conf 9999604
Q gi|254780767|r 242 RCIVSKW 248 (383)
Q Consensus 242 ~~~~~~~ 248 (383)
....++|
T Consensus 233 ~~l~~~Y 239 (247)
T PRK02947 233 RALVEKY 239 (247)
T ss_pred HHHHHHH
T ss_conf 9999999
No 163
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=75.50 E-value=3.5 Score=21.17 Aligned_cols=78 Identities=21% Similarity=0.317 Sum_probs=46.9
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45999976821478999999999973899839999717899947880650444531101367466459999999999861
Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVEL 83 (383)
Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~ 83 (383)
|||+++--|+ .++..|...|... ++++.+.+.. .+..+.
T Consensus 1 mkILlVEDd~---~~~~~l~~~L~~~---g~~V~~a~~~-----------------------------------~ea~~~ 39 (222)
T PRK10643 1 MKILIVEDDT---LLLQGLILAAQTE---GYACDGVSTA-----------------------------------REAEQS 39 (222)
T ss_pred CEEEEEECCH---HHHHHHHHHHHHC---CCEEEEECCH-----------------------------------HHHHHH
T ss_conf 9799992889---9999999999978---9999998999-----------------------------------999999
Q ss_pred CCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEEC
Q ss_conf 00128886898-5117765-799998663013463111100
Q gi|254780767|r 84 IVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYVC 122 (383)
Q Consensus 84 i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv~ 122 (383)
+....||+||+ +.-|+.| +.+.+.+|+....+|+|..-+
T Consensus 40 ~~~~~~DlvilDi~lp~~~G~~l~~~ir~~~~~~pII~lt~ 80 (222)
T PRK10643 40 LESGHYSLVVLDLGLPDEDGLHFLARIRQKKYTLPVLILTA 80 (222)
T ss_pred HHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEC
T ss_conf 97489989999688899862268999983489988999821
No 164
>KOG1465 consensus
Probab=75.04 E-value=6.6 Score=19.35 Aligned_cols=97 Identities=18% Similarity=0.168 Sum_probs=48.4
Q ss_pred EEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHH-HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH---
Q ss_conf 59985387430123051118999876402735126201663368-89999996048885055205520357887635---
Q gi|254780767|r 195 ILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQE-NLVRCIVSKWDISPEIIIDKEQKKQVFMTCNA--- 270 (383)
Q Consensus 195 I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd~--- 270 (383)
|.|-+||-+. .--|+..+.+-. +....++.-++|..+ +.....+.+.+....+ +....-...|+...-
T Consensus 165 viLT~g~SrT-----V~~FL~~A~kk~--Rkf~viVaE~~p~~qgH~~Ak~la~~giettV-I~daaVfA~MsrVnKVIi 236 (353)
T KOG1465 165 VILTLGSSRT-----VENFLKHAAKKG--RKFRVIVAEGAPNNQGHELAKPLAQAGIETTV-IPDAAVFAMMSRVNKVII 236 (353)
T ss_pred EEEECCCCHH-----HHHHHHHHHHCC--CCEEEEEEECCCCCCCHHHHHHHHHCCCEEEE-ECCHHHHHHHHHCCEEEE
T ss_conf 5984276188-----999999999616--71589996237764434764778975871588-330999997643463899
Q ss_pred ----------HHCCCHHHHH-HHH-HHCCCEEEE---CCCCCCE
Q ss_conf ----------5233115668-887-627530254---0577410
Q gi|254780767|r 271 ----------AMAASGTVIL-ELA-LCGIPVVSI---YKSEWIV 299 (383)
Q Consensus 271 ----------ai~~SGTaTL-E~a-l~g~P~IV~---Yk~~~lt 299 (383)
.++.||+-|+ ++| -..+|.+|+ ||++|+.
T Consensus 237 gt~avl~NGgl~~~~G~~~vAlaAk~h~vPv~VlAp~yKLsPly 280 (353)
T KOG1465 237 GTHAVLANGGLRAPSGVHTVALAAKHHSVPVIVLAPMYKLSPLY 280 (353)
T ss_pred EEEEEECCCCEECCCHHHHHHHHHHHCCCCEEEECCHHHCCCCC
T ss_conf 75468538976325408899999873487679952243258888
No 165
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=75.02 E-value=3 Score=21.63 Aligned_cols=22 Identities=5% Similarity=0.110 Sum_probs=9.5
Q ss_pred HHHHHHHHCCCCCEEEECCCCC
Q ss_conf 9998764027351262016633
Q gi|254780767|r 215 SAVASLVKRNPFFRFSLVTVSS 236 (383)
Q Consensus 215 ~~~~~l~~~~~~~~~~i~~~~~ 236 (383)
+.++.+.+.+|+.++++.+...
T Consensus 66 ~~i~~i~~~~p~~~ilvls~~~ 87 (210)
T PRK09935 66 TLLKRIKQIQETVKVLFLSSKS 87 (210)
T ss_pred CHHHHHHHHCCCCCEEEEECCC
T ss_conf 0567898738997089971767
No 166
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=74.78 E-value=4.6 Score=20.35 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 99999999997389983999971789
Q gi|254780767|r 18 LAGDLIKSLKEMVSYPINLVGVGGPS 43 (383)
Q Consensus 18 ~~a~li~~Lk~~~~~~~~~~giGG~~ 43 (383)
.|.++++.+++...-++++.|+-.+.
T Consensus 155 ~~~~l~~~i~~~p~~G~~vvG~~dd~ 180 (464)
T PRK10124 155 AGQMLLESFRNQPWLGFEVVGVYHDP 180 (464)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 99999999972966796699996688
No 167
>pfam07355 GRDB Glycine/sarcosine/betaine reductase selenoprotein B (GRDB). This family represents a conserved region approximately 350 residues long within the selenoprotein B component of the bacterial glycine, sarcosine and betaine reductase complexes.
Probab=73.72 E-value=4.4 Score=20.49 Aligned_cols=70 Identities=21% Similarity=0.433 Sum_probs=45.5
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECHHHHHH--------HHHHHHHHHCCCCCCEE--E-ECCCCCCCC--------CCCHH
Q ss_conf 99999998610012888689851177657--------99998663013463111--1-002211003--------66355
Q gi|254780767|r 74 IFRINQTVELIVSSKPDVLLIVDNPDFTH--------RVAKRVRKKMPNLPIIN--Y-VCPSVWAWR--------EGRAR 134 (383)
Q Consensus 74 ~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl--------~lak~lkk~~~~ipvi~--y-v~PqvWAWr--------~~R~k 134 (383)
-....++.+.+++.+||++|. -|.||- .++|.++.+ +|||++- | =-|-+-.+| .+.+.
T Consensus 66 dea~~~il~mv~~~~pDlfiA--GPAFnAGRYGvACG~i~kaV~e~-l~IP~vTgMy~ENPGvdm~kk~~yIv~t~nsAa 142 (349)
T pfam07355 66 EEAVAEILEMLKEEKPDLFIA--GPAFNAGRYGVACGTIAKAVKEE-LGIPAVTGMYVENPGVDMFKKDVYIISTGNSAA 142 (349)
T ss_pred HHHHHHHHHHHHHCCCCEEEE--CCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCHHHHHCCEEEEECCCHHH
T ss_conf 999999999998429998987--66325642588899999999998-699638641566850767644428996584176
Q ss_pred HHHHHHHHHCCC
Q ss_conf 799999864015
Q gi|254780767|r 135 KMCAYINQVISI 146 (383)
Q Consensus 135 ~~~~~~d~~~~i 146 (383)
.|++.+-.|..+
T Consensus 143 ~Mr~a~~~ma~l 154 (349)
T pfam07355 143 GMRKALPAMAKL 154 (349)
T ss_pred HHHHHHHHHHHH
T ss_conf 788889999999
No 168
>PRK10499 N,N'-diacetylchitobiose-specific PTS system transporter subunit IIB; Provisional
Probab=73.68 E-value=7.1 Score=19.14 Aligned_cols=83 Identities=17% Similarity=0.361 Sum_probs=55.5
Q ss_pred CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHH
Q ss_conf 9874599997-682147899999999997389983999971789994788065044453110136746645999999999
Q gi|254780767|r 1 MNSLKIAVIA-GEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQ 79 (383)
Q Consensus 1 m~~mki~i~a-GE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~ 79 (383)
|+++||+++| +..|--++..++-++-+++ +.++++..++-.+....+ +--|.=..| |.+....++
T Consensus 1 M~~kkIlL~C~aGMSTSlLv~kM~~~A~~~-~i~~~I~A~~~~~~~~~~-----~~~DviLLG--------PQVry~~~~ 66 (106)
T PRK10499 1 MEKKHIYLFCSAGMSTSLLVSKMRAQAEKY-EVPVIIEAFPETLAGEKG-----QNADVVLLG--------PQIAYMLPE 66 (106)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEEEEHHHHHHHC-----CCCCEEEEC--------HHHHHHHHH
T ss_conf 998779998899987899999999999976-998899995378987644-----599999998--------478887999
Q ss_pred HHHHCCCCCCCEEEEECHHHH
Q ss_conf 986100128886898511776
Q gi|254780767|r 80 TVELIVSSKPDVLLIVDNPDF 100 (383)
Q Consensus 80 ~~~~i~~~~Pd~vi~iD~pgF 100 (383)
+.+.+. .+| |..||.-+|
T Consensus 67 ik~~~~-~~P--V~vId~~~Y 84 (106)
T PRK10499 67 IQRLLP-NKP--VEVIDSLLY 84 (106)
T ss_pred HHHHCC-CCC--EEEECHHHH
T ss_conf 998828-998--899888983
No 169
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=73.56 E-value=7.1 Score=19.12 Aligned_cols=56 Identities=20% Similarity=0.457 Sum_probs=36.3
Q ss_pred HHHHHHHHHHCCCCCCCEEEE-ECHHHHHHH----HHHHHHHHCCCCCCEEEECCC-CCCCCCC
Q ss_conf 999999986100128886898-511776579----999866301346311110022-1100366
Q gi|254780767|r 74 IFRINQTVELIVSSKPDVLLI-VDNPDFTHR----VAKRVRKKMPNLPIINYVCPS-VWAWREG 131 (383)
Q Consensus 74 ~~~~~~~~~~i~~~~Pd~vi~-iD~pgFnl~----lak~lkk~~~~ipvi~yv~Pq-vWAWr~~ 131 (383)
...+++..+...+.+.+++|+ +|.||=-+. +.+.+.. ..+|++-||.|+ -+||-.|
T Consensus 15 ~~~l~r~l~~A~~~~a~~vii~ldTPGG~~~a~~~I~~~i~~--s~vPv~~yV~P~g~~A~SAG 76 (172)
T cd07015 15 YDQFDRYITIAEQDNAEAIIIELDTPGGRADAAGNIVQRIQQ--SKIPVIIYVYPPGASAASAG 76 (172)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHC--CCCCEEEEEECCCCCHHHHH
T ss_conf 999999999999779989999986896289999999999982--99998999947996267699
No 170
>PRK13117 consensus
Probab=72.79 E-value=6.6 Score=19.32 Aligned_cols=58 Identities=17% Similarity=0.234 Sum_probs=28.7
Q ss_pred HHHHHHHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 999986100128886898511776-579999866301346311110022110036635579999
Q gi|254780767|r 77 INQTVELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAY 139 (383)
Q Consensus 77 ~~~~~~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~ 139 (383)
.++..+.+++..-|.+|..|-|-- .-.+.+.+++. |+..|+.++|+- -+.|++++.+.
T Consensus 111 ~e~F~~~~~~aGvdGvIipDLP~eE~~~~~~~~~~~--gl~~I~lv~Ptt---~~~Ri~~i~~~ 169 (268)
T PRK13117 111 IDNFYARCAEAGVDSVLIADVPVEESAPFRQAAKKH--GIAPIFICPPNA---DDDTLRQIASL 169 (268)
T ss_pred HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC--CCCEEEEECCCC---CHHHHHHHHHH
T ss_conf 999999999769877985799978858999999867--983799847999---99999999974
No 171
>PRK13139 consensus
Probab=72.44 E-value=7.6 Score=18.95 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=30.4
Q ss_pred HHHHHHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 99986100128886898511776-579999866301346311110022110036635579999
Q gi|254780767|r 78 NQTVELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAY 139 (383)
Q Consensus 78 ~~~~~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~ 139 (383)
++..+.+++..-|.+|..|-|-= .-.+.+.+++. |+..|.+|+|+- .+.|++.+.+.
T Consensus 110 e~F~~~~~~~Gv~GvIipDLP~eE~~~~~~~~~~~--gl~~I~lvaPtt---~~~Ri~~i~~~ 167 (254)
T PRK13139 110 ERFIDEVADIGVKGLIVPDLPPEQAQDYIAQCRAK--GMAPIGIYAPTS---TDERMGKIAAA 167 (254)
T ss_pred HHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHC--CCCEEEEECCCC---CHHHHHHHHHC
T ss_conf 99999999759985864799978899999999846--975799945899---98999999851
No 172
>pfam06925 MGDG_synth Monogalactosyldiacylglycerol (MGDG) synthase. This family represents a conserved region of approximately 180 residues within plant and bacterial monogalactosyldiacylglycerol (MGDG) synthase (EC:2.4.1.46). In Arabidopsis, there are two types of MGDG synthase which differ in their N-terminal portion: type A and type B.
Probab=72.29 E-value=7.6 Score=18.93 Aligned_cols=83 Identities=8% Similarity=0.054 Sum_probs=45.7
Q ss_pred HHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCC--CCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 99999861001288868985117765799998663013--4631111002211003663557999998640156774223
Q gi|254780767|r 76 RINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMP--NLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEV 153 (383)
Q Consensus 76 ~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~--~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~ 153 (383)
..+++.+.|++++||+||+. +|=.+--....+|+++. .+|++-.| .|.. +.-..|
T Consensus 77 ~~~~l~~~i~~~~PD~IV~T-hp~~~~~~l~~lk~~~~~~~~p~~tVi------------------TD~~----~~H~~W 133 (169)
T pfam06925 77 FARELAALLKEFQPDIIIST-HPLPAAVPLSVLKSKGLLKRVLVVTVV------------------TDFR----TCHPFW 133 (169)
T ss_pred HHHHHHHHHHHHCCCEEEEC-CHHHHHHHHHHHHHCCCCCCCCEEEEE------------------CCCC----CCCCCC
T ss_conf 99999999998493999999-762667899999983878899789998------------------9886----665781
Q ss_pred HHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 200255314763882112210013558889761876556
Q gi|254780767|r 154 MQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQW 192 (383)
Q Consensus 154 f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~ 192 (383)
+. .+++..||+|+-+. +...+.|+++++
T Consensus 134 ~~--~~~D~y~Va~ee~~---------~~l~~~Gi~~~k 161 (169)
T pfam06925 134 LH--PEIDRYYVPSKEVK---------KEALEKGIDPSN 161 (169)
T ss_pred CC--CCCCEEEECCHHHH---------HHHHHCCCCHHH
T ss_conf 68--99998997999999---------999985999889
No 173
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=72.29 E-value=4.8 Score=20.24 Aligned_cols=36 Identities=33% Similarity=0.648 Sum_probs=17.0
Q ss_pred CCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEE
Q ss_conf 00128886898-5117765-799998663013463111
Q gi|254780767|r 84 IVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIIN 119 (383)
Q Consensus 84 i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~ 119 (383)
+..++||+|++ +.-||-| +.+.+.+|+..+.+|+|.
T Consensus 43 l~~~~~dlvl~Di~mP~~~Gl~ll~~lr~~~~~~pvIv 80 (469)
T PRK10923 43 LASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII 80 (469)
T ss_pred HHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEE
T ss_conf 86699999987899999899999999984298997899
No 174
>PRK13115 consensus
Probab=72.06 E-value=7.6 Score=18.94 Aligned_cols=124 Identities=18% Similarity=0.099 Sum_probs=64.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEE-------CCHHHHHCCCEEEEC---HH--------------HCCEE
Q ss_conf 9999768214789999999999738998399997-------178999478806504---44--------------53110
Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGV-------GGPSLQKEGLVSLFD---FS--------------ELSVI 61 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~gi-------GG~~m~~~G~~~~~~---~~--------------~l~v~ 61 (383)
-|+.||.+|=|.- ..++++|-+. +-|+-=.|+ -||--|++....+-+ ++ .+-+|
T Consensus 28 ~yitaG~P~~e~t-~~~i~~l~~~-GaDiiElGiPFSDP~ADGPvIQ~A~~rAL~~G~~~~~~f~~v~~~~~~~~PivlM 105 (269)
T PRK13115 28 GYLPAGFPDVDTS-IAAMTALVES-GCDIVEVGLPYSDPVMDGPVIQAATEAALRGGVRVRDVFRAVEAISAAGGRALVM 105 (269)
T ss_pred EEECCCCCCHHHH-HHHHHHHHHC-CCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEH
T ss_conf 7852738998999-9999999966-9999997999888566689999999999977995999999999841579988854
Q ss_pred EHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 136746645999999999986100128886898511776-5799998663013463111100221100366355799999
Q gi|254780767|r 62 GIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYI 140 (383)
Q Consensus 62 G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~ 140 (383)
|.+.++-+ .-.++..+.+++..-|.+|..|-|-= .-.+.+.+++. |+..|+.|+|+- .+.|++.+.+..
T Consensus 106 ~Y~N~i~~-----yG~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~--gi~~I~LvaPtt---~~eRi~~i~~~a 175 (269)
T PRK13115 106 TYWNPVLR-----YGVDRFARDLAAAGGAGLITPDLIPDEAGEWLAASERH--GLDRIFLVAPSS---TPERLAETVEAS 175 (269)
T ss_pred HHHHHHHH-----HCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHC--CEEEEEEECCCC---CHHHHHHHHHCC
T ss_conf 75489987-----36999999999739980764789978999999999865--812899858999---889999998448
Q ss_pred H
Q ss_conf 8
Q gi|254780767|r 141 N 141 (383)
Q Consensus 141 d 141 (383)
.
T Consensus 176 ~ 176 (269)
T PRK13115 176 R 176 (269)
T ss_pred C
T ss_conf 8
No 175
>PRK09483 response regulator; Provisional
Probab=71.79 E-value=4.2 Score=20.66 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=8.3
Q ss_pred HHHHHHHHCCCCCEEEECCC
Q ss_conf 99987640273512620166
Q gi|254780767|r 215 SAVASLVKRNPFFRFSLVTV 234 (383)
Q Consensus 215 ~~~~~l~~~~~~~~~~i~~~ 234 (383)
+++..+.+..|..++++.+.
T Consensus 64 ~~~~~i~~~~p~~~vivls~ 83 (216)
T PRK09483 64 EATRKILRSTPDVKIIMLTV 83 (216)
T ss_pred HHHHHHHHHCCCCCEEEECC
T ss_conf 37788874089985786305
No 176
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=71.67 E-value=7.9 Score=18.84 Aligned_cols=90 Identities=14% Similarity=0.257 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCHHHHHCC--CEE----EECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 9999999999738998399997178999478--806----5044453110136746645999999999986100128886
Q gi|254780767|r 18 LAGDLIKSLKEMVSYPINLVGVGGPSLQKEG--LVS----LFDFSELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDV 91 (383)
Q Consensus 18 ~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G--~~~----~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~ 91 (383)
.+..++..|... +.--.+.|++++..+... ... .=.+.++..+|-.- ...--.+.|.+-+||+
T Consensus 26 ~~~~~l~~l~~~-~~~~~ivg~~~~~~~~~~~~~~~~~~~~P~l~~lp~vg~~~----------~~~~n~E~il~l~PDv 94 (342)
T cd01139 26 RQLYALALLEGE-NPFARIVGWGGDLKKGDPDTYAKYKEKFPEIADIPLIGSTY----------NGDFSVEKVLTLKPDL 94 (342)
T ss_pred HHHHHHHHHCCC-CCCCEEEEECCHHHHCCHHHHHHHHHHCHHHHCCCCCCCCC----------CCCCCHHHHHHCCCCE
T ss_conf 199999974534-55236998363553216566899987595865188547888----------9985999996219988
Q ss_pred EEEE---CHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 8985---1177657999986630134631111
Q gi|254780767|r 92 LLIV---DNPDFTHRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 92 vi~i---D~pgFnl~lak~lkk~~~~ipvi~y 120 (383)
||+- ...+.+-.+.+++.+. |||++..
T Consensus 95 Vi~~~~~~~~~~~~~~~~~l~~~--GIpVv~~ 124 (342)
T cd01139 95 VILNIWAKTTAEESGILEKLEQA--GIPVVFV 124 (342)
T ss_pred EEEECCCCCCCCCHHHHHHHHHC--CCCEEEE
T ss_conf 99944345654456799999971--9988999
No 177
>PRK10403 transcriptional regulator NarP; Provisional
Probab=71.57 E-value=3.2 Score=21.41 Aligned_cols=31 Identities=10% Similarity=0.300 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8989999999998449899999999999999983899
Q gi|254780767|r 331 IRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTK 367 (383)
Q Consensus 331 ~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~ 367 (383)
.+-+.|+..+. +.. +....-.+++.++||-.
T Consensus 169 ~snkeIA~~L~--iS~----~TV~~h~~~I~~KLgv~ 199 (215)
T PRK10403 169 LSNKQIASVLN--ISE----QTVKVHIRNLLRKLNVR 199 (215)
T ss_pred CCHHHHHHHHC--CCH----HHHHHHHHHHHHHHCCC
T ss_conf 99999999979--829----99999999999986899
No 178
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=71.24 E-value=4.6 Score=20.35 Aligned_cols=42 Identities=26% Similarity=0.312 Sum_probs=25.5
Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCC
Q ss_conf 86100128886898511776579999866301346311110022
Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPS 124 (383)
Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~Pq 124 (383)
.+.|.+-+||+||.-++.+..-......++ .|||+++.-.|+
T Consensus 67 ~E~i~al~PDlVi~~~~~~~~~~~~~~~~~--~gip~v~~~~~~ 108 (262)
T cd01147 67 YEKIAALKPDVVIDVGSDDPTSIADDLQKK--TGIPVVVLDGGD 108 (262)
T ss_pred HHHHHCCCCCEEEEECCCCCHHHHHHHHHH--HCCCEEECCCCC
T ss_conf 999960699889984677706789999998--799789748999
No 179
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=70.69 E-value=2.8 Score=21.83 Aligned_cols=39 Identities=18% Similarity=0.346 Sum_probs=28.7
Q ss_pred HHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE
Q ss_conf 6100128886898-5117765-7999986630134631111
Q gi|254780767|r 82 ELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 82 ~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383)
+.+.+++||++|+ +.-||-| +.+++.+|+....+|++..
T Consensus 38 ~~~~~~~~DlvilDi~lP~~dG~~l~~~iR~~~~~~PII~l 78 (219)
T PRK10336 38 EALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLIL 78 (219)
T ss_pred HHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEE
T ss_conf 99862896999997999999856310104652788878998
No 180
>pfam02601 Exonuc_VII_L Exonuclease VII, large subunit. This family consist of exonuclease VII, large subunit EC:3.1.11.6 This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. This exonuclease VII enzyme is composed of one large subunit and 4 small ones.
Probab=70.35 E-value=8.4 Score=18.65 Aligned_cols=92 Identities=20% Similarity=0.287 Sum_probs=54.4
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74599997682147899999999997389983999971789994788065044453110136746645999999999986
Q gi|254780767|r 3 SLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVE 82 (383)
Q Consensus 3 ~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~ 82 (383)
|.+|.|++...|.=++ .+++.++++ .|.+++.=. .-.||-++.. -|++..+ +.+-+
T Consensus 14 p~~IgvITS~~gAa~~--Di~~~~~~r-~p~~~i~l~-p~~VQG~~a~-------------~~I~~ai-------~~~~~ 69 (295)
T pfam02601 14 PKRIAVITSATGAAYQ--DFLRTARRR-GPLVEIEIY-PTLVQGDGAA-------------ESIVSAL-------ERANE 69 (295)
T ss_pred CCEEEEEECCCCHHHH--HHHHHHHHH-CCCCEEEEE-CCCCCCCHHH-------------HHHHHHH-------HHHHH
T ss_conf 9989998489408999--999999981-999679994-7357650489-------------9999999-------99984
Q ss_pred HCCCCCCCEEEEE-------CHHHHH-HHHHHHHHHHCCCCCCEEE
Q ss_conf 1001288868985-------117765-7999986630134631111
Q gi|254780767|r 83 LIVSSKPDVLLIV-------DNPDFT-HRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 83 ~i~~~~Pd~vi~i-------D~pgFn-l~lak~lkk~~~~ipvi~y 120 (383)
.-...+||++|.+ |-..|| ..+|+.+-+. .+|||-=
T Consensus 70 ~~~~~~~Dviii~RGGGS~eDL~~FN~e~laraI~~~--~iPvisa 113 (295)
T pfam02601 70 RETALDYDVIVIIRGGGSKEDLWVFNDEELARAIANS--PIPVITG 113 (295)
T ss_pred CCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHC--CCCEEEC
T ss_conf 6898998389995786888987455889999999838--9987806
No 181
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=69.79 E-value=8.6 Score=18.57 Aligned_cols=90 Identities=17% Similarity=0.245 Sum_probs=46.9
Q ss_pred CCCEEEEEECCCCHHHHHHHH-HHHHHH--HCCCCEEEEEECCHHHHH-----CCCEEE--ECHHHCCEE----------
Q ss_conf 874599997682147899999-999997--389983999971789994-----788065--044453110----------
Q gi|254780767|r 2 NSLKIAVIAGEISGDLLAGDL-IKSLKE--MVSYPINLVGVGGPSLQK-----EGLVSL--FDFSELSVI---------- 61 (383)
Q Consensus 2 ~~mki~i~aGE~SGD~~~a~l-i~~Lk~--~~~~~~~~~giGG~~m~~-----~G~~~~--~~~~~l~v~---------- 61 (383)
+++||.|+.|+++| .|-.+ +++|++ ...+++.|.=+|.+..-+ .|++.- ..-.++.+.
T Consensus 4 ~~lrIaIT~GDPaG--IGPEIilKal~~~~~~~~~~~~vviGd~~~l~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~ 81 (329)
T PRK01909 4 QPLQIAITTGEPAG--VGPELTVQALADAATRWPDARFTVLGDAALLAARAAAVGVDWARLAAGGHVSVAHRALAAPAEA 81 (329)
T ss_pred CCCEEEEECCCCCC--CHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHCCCCHHHHCCCCCCCEECCCCCCCCCC
T ss_conf 99769997588850--1799999999865754689888999799999999998399835504689751521677787878
Q ss_pred EHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 136746645999999999986100128886898
Q gi|254780767|r 62 GIMQVVRHLPQFIFRINQTVELIVSSKPDVLLI 94 (383)
Q Consensus 62 G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~ 94 (383)
|-... .+=...+..++...+.+++.+.|++|+
T Consensus 82 G~~~~-~~g~~~~~~l~~Av~~~~~g~~dalVT 113 (329)
T PRK01909 82 GKLDA-ANGRYVLDLLDAAIDGALAGRYDAIVT 113 (329)
T ss_pred CCCCH-HHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 98088-999999999999999997598889997
No 182
>pfam05693 Glycogen_syn Glycogen synthase. This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P).
Probab=69.69 E-value=7.8 Score=18.87 Aligned_cols=98 Identities=21% Similarity=0.220 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCEEE---EEECCCCC-CEEEEHHHCCCCCCCHHHCCC
Q ss_conf 2035788763552331-----15668887627530254057741000---01024676-102302440784261242054
Q gi|254780767|r 260 QKKQVFMTCNAAMAAS-----GTVILELALCGIPVVSIYKSEWIVNF---FIFYIKTW-TCALPNLIVDYPLVPEYFNSM 330 (383)
Q Consensus 260 ~~~~~l~~sd~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt~~---i~~lik~~-~i~LpNii~~~~ivPEliQ~~ 330 (383)
+.++.+..||+.+-.| |=--||++.+|+|+|.- -|+.| +...+.-+ ..|.- +.+|.- -..+
T Consensus 462 ~Y~efv~Gc~LgVFPSYYEPWGYTPlE~~a~gVPsITT----dLSGFG~~~~~~~~~~~~~GI~--VvdR~~----~n~~ 531 (633)
T pfam05693 462 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTT----NLSGFGCFMEEHIEDPKDYGIY--IVDRRF----KSPD 531 (633)
T ss_pred CHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEC----CCHHHHHHHHHHHCCCCCCCEE--EEECCC----CCHH
T ss_conf 79998524664446543589888859986517880113----7515789999873064347579--997888----9879
Q ss_pred CCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 898999999999844-9899999999999999983899
Q gi|254780767|r 331 IRSEALVRWIERLSQ-DTLQRRAMLHGFENLWDRMNTK 367 (383)
Q Consensus 331 ~~~~~i~~~~~~ll~-d~~~r~~~~~~~~~~~~~Lg~~ 367 (383)
-..+.|++.+.++-. +...|.+|++..+++.+.+...
T Consensus 532 Esv~ql~~~m~~f~~~s~rqri~~RnrterLS~~~dW~ 569 (633)
T pfam05693 532 ESVQQLAQFMYEFCQQSRRQRIIQRNRTERLSDLLDWK 569 (633)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHH
T ss_conf 99999999999997499999999999999998864899
No 183
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=69.61 E-value=5.9 Score=19.66 Aligned_cols=80 Identities=16% Similarity=0.276 Sum_probs=51.0
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH
Q ss_conf 98745999976821478999999999973899839999717899947880650444531101367466459999999999
Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383)
Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383)
|+. ||+++--|+. .+..+...|... ++++..... ..+.
T Consensus 1 M~~-kILiVEDd~~---l~~~l~~~L~~~---g~~v~~a~~-----------------------------------g~~a 38 (229)
T PRK10161 1 MAR-RILVVEDEAP---IREMVCFVLEQN---GFQPVEAED-----------------------------------YDSA 38 (229)
T ss_pred CCC-CEEEEECCHH---HHHHHHHHHHHC---CCEEEEECC-----------------------------------HHHH
T ss_conf 997-1999959999---999999999977---999999899-----------------------------------9999
Q ss_pred HHHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHC--CCCCCEEEEC
Q ss_conf 86100128886898-5117765-79999866301--3463111100
Q gi|254780767|r 81 VELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKM--PNLPIINYVC 122 (383)
Q Consensus 81 ~~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~--~~ipvi~yv~ 122 (383)
.+.+.++.||++|+ +.-||.| +.+.+.+|+.. .++|+|..-+
T Consensus 39 ~~~l~~~~~DliilDi~lP~~dG~~~~~~ir~~~~~~~~PII~lta 84 (229)
T PRK10161 39 VNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTA 84 (229)
T ss_pred HHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 9998528998999978998876335878877502468975899955
No 184
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=69.52 E-value=5 Score=20.11 Aligned_cols=76 Identities=21% Similarity=0.370 Sum_probs=41.5
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45999976821478999999999973899839999717899947880650444531101367466459999999999861
Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVEL 83 (383)
Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~ 83 (383)
+||+|+ |.|..+ ..+++.+-+. .+++++.|..++..+ ..+.
T Consensus 3 irVLIV--DDs~~~--R~~l~~~L~~-~~~~eVv~~A~nG~e----------------------------------Al~~ 43 (345)
T PRK00742 3 IRVLVV--DDSAFM--RRLLSEILNS-DPDIEVVGTARDGLE----------------------------------AVEK 43 (345)
T ss_pred CEEEEE--ECCHHH--HHHHHHHHHH-CCCEEEEEEECCHHH----------------------------------HHHH
T ss_conf 269999--298899--9999999972-899089999899999----------------------------------9999
Q ss_pred CCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEE
Q ss_conf 00128886898-5117765-799998663013463111
Q gi|254780767|r 84 IVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIIN 119 (383)
Q Consensus 84 i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~ 119 (383)
+.+.+||+|++ |.-|+.| +-+.+.+++.. .+|++-
T Consensus 44 ~~~~~pDvVllDi~MP~mdGie~l~~I~~~~-p~pVim 80 (345)
T PRK00742 44 IKKLNPDVITLDVEMPVMDGIEALRKIMALR-PTPVVM 80 (345)
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHC-CCCEEE
T ss_conf 8860999999837889998799999999758-987799
No 185
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=69.38 E-value=8.8 Score=18.51 Aligned_cols=80 Identities=18% Similarity=0.168 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEC-HHHHHHHHHHHHH---------HHCCCCCCEEEECCCCCCC--CCCCHH
Q ss_conf 664599999999998610012888689851-1776579999866---------3013463111100221100--366355
Q gi|254780767|r 67 VRHLPQFIFRINQTVELIVSSKPDVLLIVD-NPDFTHRVAKRVR---------KKMPNLPIINYVCPSVWAW--REGRAR 134 (383)
Q Consensus 67 l~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD-~pgFnl~lak~lk---------k~~~~ipvi~yv~PqvWAW--r~~R~k 134 (383)
...--++.....++.+.+.+++||.+..=| |.+.|.+-+-.+- ....|+|+.-|-+-||+-- +.||+.
T Consensus 38 ~~~~~RL~~I~~~l~~li~~~~P~~vaiE~~f~~~n~~tal~lg~arGvi~~~~~~~~i~v~ey~P~~VK~~vtG~G~A~ 117 (154)
T cd00529 38 APLPSRLKTIYDGLNEVIDQFQPDVVAIERVFFAKNPDSALKLGQARGALILALANRNLPVFEYTPNQVKKAVTGYGKAD 117 (154)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCC
T ss_conf 99899999999999999983499789865465601888899999999999999998179861688899889986797375
Q ss_pred --HHHHHHHHHCCC
Q ss_conf --799999864015
Q gi|254780767|r 135 --KMCAYINQVISI 146 (383)
Q Consensus 135 --~~~~~~d~~~~i 146 (383)
.+.+.+..++.+
T Consensus 118 K~qV~~mV~~~l~l 131 (154)
T cd00529 118 KDQVQHMVKRLLNL 131 (154)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999998199
No 186
>pfam04392 ABC_sub_bind ABC transporter substrate binding protein. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.
Probab=69.31 E-value=8.8 Score=18.50 Aligned_cols=166 Identities=16% Similarity=0.190 Sum_probs=76.5
Q ss_pred HHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHH---
Q ss_conf 99998610012888689851177657999986630134631111002211003663557999998640156774223---
Q gi|254780767|r 77 INQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEV--- 153 (383)
Q Consensus 77 ~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~--- 153 (383)
...+.+.+...+||+++.+-.| -|..+++...++|+++-.- .| |-+..+
T Consensus 48 ~~~ia~~l~~~~~Dli~a~~Tp-----aa~a~~~~~~~iPIVf~~v-----------------~d------Pv~aglv~s 99 (292)
T pfam04392 48 AAQIARQLVTDKNDLIIGIATP-----VAQILKSAIKTIPIVFAAV-----------------TD------PVGAKLVPS 99 (292)
T ss_pred HHHHHHHHHHCCCCEEEECCCH-----HHHHHHHHCCCCCEEEEEE-----------------CC------HHHHCCCCC
T ss_conf 9999999973799899987509-----9999998359999899972-----------------68------566066445
Q ss_pred HHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECC
Q ss_conf 20025531476388211221001355888976187655650599853874301230511189998764027351262016
Q gi|254780767|r 154 MQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVT 233 (383)
Q Consensus 154 f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~ 233 (383)
+.+ .|-+++=|-+. .. ....-+. -..+.++.+.|+++=-+..+--. ...+.++...++. +++++...
T Consensus 100 ~~~-pg~NvTGvs~~----~~-~~~~l~l--l~~l~P~~k~igviyn~~e~~s~----~~~~~~~~~a~~~-gi~l~~~~ 166 (292)
T pfam04392 100 KEQ-PGENVTGVSDL----VD-VEQTIEL--IKKLLPNVKSIGVYYSPSEANSV----SLVEEIKKYAKKS-GIKVVEAS 166 (292)
T ss_pred CCC-CCCEEEEEECC----CC-HHHHHHH--HHHHCCCCCEEEEEECCCCCCHH----HHHHHHHHHHHHC-CCEEEEEE
T ss_conf 668-99826785277----47-9999999--99868898589999579986579----9999999999976-99899996
Q ss_pred CCCHHHHHHHHHHHCCCCCEEE-EECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEC
Q ss_conf 6336889999996048885055-20552035788763552331156688876275302540
Q gi|254780767|r 234 VSSQENLVRCIVSKWDISPEII-IDKEQKKQVFMTCNAAMAASGTVILELALCGIPVVSIY 293 (383)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~Y 293 (383)
..+..+. ...........+.. +..+... .+. -.+.+-.+.-.++|.+..+
T Consensus 167 v~~~~ei-~~a~~~l~~~~Dal~i~~d~~v--~s~-------~~~i~~~a~~~kiPv~~~~ 217 (292)
T pfam04392 167 VPSSNDV-PSAMSSMAGKVDAIFIPTDNLI--ASA-------FTAVLQEANKAKIPVITSD 217 (292)
T ss_pred CCCHHHH-HHHHHHHHCCCCEEEEECCCCH--HHH-------HHHHHHHHHHCCCCEEECC
T ss_conf 6886679-9999974328988999378107--889-------9999999997499989577
No 187
>PRK10651 transcriptional regulator NarL; Provisional
Probab=69.19 E-value=2.1 Score=22.67 Aligned_cols=34 Identities=9% Similarity=0.242 Sum_probs=17.9
Q ss_pred CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 5489899999999984498999999999999999838999
Q gi|254780767|r 329 SMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKK 368 (383)
Q Consensus 329 ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~ 368 (383)
.-.+-+.|+.++. +.. +....-.+++.++||-..
T Consensus 169 ~G~snkeIA~~L~--iS~----~TV~~h~~~i~~KLgv~n 202 (216)
T PRK10651 169 QGLSNKMIARRLD--ITE----STVKVHVKHMLKKMKLKS 202 (216)
T ss_pred CCCCHHHHHHHHC--CCH----HHHHHHHHHHHHHHCCCC
T ss_conf 5999999999969--789----999999999999848999
No 188
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=68.83 E-value=7.7 Score=18.88 Aligned_cols=146 Identities=14% Similarity=0.231 Sum_probs=79.6
Q ss_pred HHHHHHHHHCCCC-CCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCH
Q ss_conf 9999998610012-8886898-5117765-79999866301346311110022110036635579999986401567742
Q gi|254780767|r 75 FRINQTVELIVSS-KPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEK 151 (383)
Q Consensus 75 ~~~~~~~~~i~~~-~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~ 151 (383)
.....+.+.+... +||++|+ |=-||.| |-|-+++|+..|..|||= |.-+.|..-++-+|+.
T Consensus 29 ~~A~~~l~~l~~~p~pD~~~tD~rMPg~~Gl~LL~~ik~~~P~LPVIv----------------M~A~~dl~~Av~a~~~ 92 (471)
T TIGR01818 29 DNAASVLRALAREPQPDLLITDVRMPGEDGLDLLKQIKKRHPKLPVIV----------------MTAHSDLDSAVAAYQR 92 (471)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEE----------------ECCCHHHHHHHHHHHC
T ss_conf 318999999844799987986122688248999999985089997798----------------7130678999999735
Q ss_pred HHHHCCCCCCEEECCCCC-CCCCCCCCCHHHHHHHCCCCCCCCEEEEEE--CCCCCCHHHHCCCHHHHHHHHHHC-CCCC
Q ss_conf 232002553147638821-122100135588897618765565059985--387430123051118999876402-7351
Q gi|254780767|r 152 EVMQRLGGPPTTFVGHPL-SSSPSILEVYSQRNKQRNTPSQWKKILLLP--GSRAQEIYKILPFFESAVASLVKR-NPFF 227 (383)
Q Consensus 152 ~~f~k~~~~~~~fVGHPl-~d~~~~~~~~~~~~~~~~~~~~~~~I~llP--GSR~~EI~~~lP~~l~~~~~l~~~-~~~~ 227 (383)
-.| .|.--|+ +|+....-.+.-. -.....--..-. -+...||-=-.|-|-++...+..- ..++
T Consensus 93 GAf--------EYLpKPFD~de~v~lv~RA~~-----~~~~~~~~~~~~~~~~~~~~liG~aPAMQevfR~igRL~~~~l 159 (471)
T TIGR01818 93 GAF--------EYLPKPFDLDEAVTLVERALA-----HAQEQVALELDAGEAEDSAELIGEAPAMQEVFRAIGRLSRSDL 159 (471)
T ss_pred CCH--------HCCCCCCCHHHHHHHHHHHHC-----CCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 830--------217698766889999998610-----3001222000121012562123688516899999997516960
Q ss_pred EEEECCCC-CHHHHHHHHHHHCC
Q ss_conf 26201663-36889999996048
Q gi|254780767|r 228 RFSLVTVS-SQENLVRCIVSKWD 249 (383)
Q Consensus 228 ~~~i~~~~-~~~~~~~~~~~~~~ 249 (383)
.+.|-.-+ +-++++-.-+..++
T Consensus 160 ~VlI~GESGTGKELVA~ALH~~s 182 (471)
T TIGR01818 160 SVLINGESGTGKELVARALHRHS 182 (471)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 58885575775899999840137
No 189
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=68.78 E-value=9 Score=18.43 Aligned_cols=61 Identities=15% Similarity=0.123 Sum_probs=28.4
Q ss_pred HHHHHCCCHHHHHHHHHHCCCEEEECCCCCCEEEE-EEC-CCCCCEEEEHHHCCCCCCCHHHCCCCCHH
Q ss_conf 63552331156688876275302540577410000-102-46761023024407842612420548989
Q gi|254780767|r 268 CNAAMAASGTVILELALCGIPVVSIYKSEWIVNFF-IFY-IKTWTCALPNLIVDYPLVPEYFNSMIRSE 334 (383)
Q Consensus 268 sd~ai~~SGTaTLE~al~g~P~IV~Yk~~~lt~~i-~~l-ik~~~i~LpNii~~~~ivPEliQ~~~~~~ 334 (383)
+.+++++|..--.|+-+.+.=.++. .+.++ -.. +.--|+|.| .+.|+.-+.|.+.-..+.+
T Consensus 226 t~~~~A~a~a~~~~ail~d~~~vl~-----~s~~l~G~yg~~dv~~gvP-~~lg~~Gv~~iie~~l~~~ 288 (313)
T COG0039 226 TYYGPAAALARMVEAILRDEKRVLP-----VSVYLDGEYGVEDVYFGVP-AVLGKNGVEEILELLLSDD 288 (313)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCEEE-----EEEEECCCCCCCCEEEEEE-EEECCCCCEEEECCCCCHH
T ss_conf 0566999999999999747785687-----8775357667687599856-8986897279845888989
No 190
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=68.60 E-value=9.1 Score=18.41 Aligned_cols=156 Identities=10% Similarity=0.092 Sum_probs=65.6
Q ss_pred HHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEE-C------CCC--CCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 9986100128886898511776579999866301346311110-0------221--100366355799999864015677
Q gi|254780767|r 79 QTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYV-C------PSV--WAWREGRARKMCAYINQVISILPF 149 (383)
Q Consensus 79 ~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv-~------Pqv--WAWr~~R~k~~~~~~d~~~~ifpF 149 (383)
...+.+.+.+..+++. .+.+.++.++..+.+. ++|++-.. + |.. |.++-. ..+.+..-.+..+
T Consensus 58 ~a~kLi~~d~V~~i~g-~~s~~~~A~~~~~~~~--~vp~i~~~~~~~~~~~~~~~~~~F~~~-----~~~~~~~~~~~~~ 129 (351)
T cd06334 58 CYERLKGEDGAVAFQG-WSTGITEALIPKIAAD--KIPLMSGSYGATLADDGAVFPYNFPVG-----PTYSDQARALVQY 129 (351)
T ss_pred HHHHHHHCCCEEEECC-CCCHHHHHHHHHHHHH--CCCEEECCCCCCCCCCCCCCCEEEECC-----CCHHHHHHHHHHH
T ss_conf 9999985398266568-8867899999999981--992895246875233687784167626-----9878999999999
Q ss_pred CH-HHHHCCCCCCEEECCC--CCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCC
Q ss_conf 42-2320025531476388--21122100135588897618765565059985387430123051118999876402735
Q gi|254780767|r 150 EK-EVMQRLGGPPTTFVGH--PLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPF 226 (383)
Q Consensus 150 E~-~~f~k~~~~~~~fVGH--Pl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~ 226 (383)
=. ++..+..+-++-++.+ |.-.. ....-.+..++.|.. ++.--.=++. -.-|-..+.++.+..|+
T Consensus 130 l~~~~~~~~~~kkva~v~~d~~~G~~--~~~~~~~~~~~~G~~----vv~~~~~~~~------~~Dft~~l~~i~~a~pD 197 (351)
T cd06334 130 IAEQEGGKLKGKKIALVYHDSPFGKE--PIEALKALAEKLGFE----VVLEPVPPPG------PNDQKAQWLQIRRSGPD 197 (351)
T ss_pred HHHHHCCCCCCCEEEEEECCCHHHHH--HHHHHHHHHHHCCCE----EEEEEECCCC------CCCHHHHHHHHHHCCCC
T ss_conf 99841302488789999568627689--999999999976997----9888806999------83589999999976989
Q ss_pred CEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 12620166336889999996048885055
Q gi|254780767|r 227 FRFSLVTVSSQENLVRCIVSKWDISPEII 255 (383)
Q Consensus 227 ~~~~i~~~~~~~~~~~~~~~~~~~~~~i~ 255 (383)
..|+....+..-..+++ ..+.+....+.
T Consensus 198 ~V~~~~~~~~~~~~~kq-a~~~G~~~~~i 225 (351)
T cd06334 198 YVILWGWGVMNPVAIKE-AKRVGLDDKFI 225 (351)
T ss_pred EEEEECCCHHHHHHHHH-HHHCCCCCCEE
T ss_conf 99993773789999999-99759998579
No 191
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=68.59 E-value=5.3 Score=19.94 Aligned_cols=78 Identities=17% Similarity=0.372 Sum_probs=44.0
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74599997682147899999999997389983999971789994788065044453110136746645999999999986
Q gi|254780767|r 3 SLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVE 82 (383)
Q Consensus 3 ~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~ 82 (383)
||||+|+=-++. --.+++.+-+. .+++++.|...+.. +..+
T Consensus 1 PirVLIVDDs~~----~R~~l~~~L~~-~~~~eVv~~A~~g~----------------------------------eAl~ 41 (340)
T PRK12555 1 PMNVGIVDDSAL----AREALRRIIAR-RPDHRVLGVATDGL----------------------------------QARD 41 (340)
T ss_pred CCEEEEEECCHH----HHHHHHHHHHH-CCCCEEEEEECCHH----------------------------------HHHH
T ss_conf 988999909889----99999999960-99948999989999----------------------------------9999
Q ss_pred HCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE
Q ss_conf 100128886898-5117765-7999986630134631111
Q gi|254780767|r 83 LIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 83 ~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383)
.+.+.+||+|++ |+-|+.| +-+.+++++.. .+|++-.
T Consensus 42 ~~~~~~pDvVllDi~MP~mdGie~l~~I~~~~-p~PVimv 80 (340)
T PRK12555 42 LCKAQPPDVVLLDLEMPRMDGLTFLRRIMRRR-PCPVLIV 80 (340)
T ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHC-CCCEEEE
T ss_conf 98861999999727889998799999999878-9986998
No 192
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=68.39 E-value=3.2 Score=21.44 Aligned_cols=44 Identities=20% Similarity=0.340 Sum_probs=30.0
Q ss_pred HHHHHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEEC
Q ss_conf 9986100128886898-5117765-799998663013463111100
Q gi|254780767|r 79 QTVELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYVC 122 (383)
Q Consensus 79 ~~~~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv~ 122 (383)
+..+.+..+.||++|+ +.-||-| +.+++++|+....+|++..-+
T Consensus 35 ~al~~~~~~~~dlvilD~~lp~~~G~~l~~~ir~~~~~~piI~lta 80 (223)
T PRK10816 35 EADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTA 80 (223)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHCCCCCCCEEEEEC
T ss_conf 9999997579989999799989886400120110489876899944
No 193
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=67.94 E-value=6.4 Score=19.42 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=24.7
Q ss_pred CCCEEEEECHHHHH---HHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 88868985117765---799998663013463111100221100366355799999864015
Q gi|254780767|r 88 KPDVLLIVDNPDFT---HRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISI 146 (383)
Q Consensus 88 ~Pd~vi~iD~pgFn---l~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~i 146 (383)
+=|++|.+.++|-+ +.+++.+|++ |+++|-.- ...-..+.++.|..+.+
T Consensus 75 ~~Dv~I~iS~SG~T~~~~~~~~~aK~~--ga~iI~IT--------~~~~S~la~~aD~~l~i 126 (179)
T cd05005 75 PGDLLIAISGSGETSSVVNAAEKAKKA--GAKVVLIT--------SNPDSPLAKLADVVVVI 126 (179)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC--CCEEEEEE--------CCCCCHHHHHCCEEEEC
T ss_conf 999999981999956899999999987--99199997--------98999789958999981
No 194
>PRK13116 consensus
Probab=67.78 E-value=9.4 Score=18.34 Aligned_cols=17 Identities=41% Similarity=0.561 Sum_probs=9.0
Q ss_pred HHHHHHHHHHCCCCCCE
Q ss_conf 79999866301346311
Q gi|254780767|r 102 HRVAKRVRKKMPNLPII 118 (383)
Q Consensus 102 l~lak~lkk~~~~ipvi 118 (383)
|.+.+.+|+....+|++
T Consensus 82 ~~~v~~ir~~~~~~Piv 98 (278)
T PRK13116 82 LEQIKRVRAAYPEVPIG 98 (278)
T ss_pred HHHHHHHCCCCCCCCEE
T ss_conf 99999840358987689
No 195
>PRK13133 consensus
Probab=67.45 E-value=9.1 Score=18.42 Aligned_cols=124 Identities=15% Similarity=0.181 Sum_probs=64.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEE-------CCHHHHHCCCEEE---------ECH----H---------
Q ss_conf 9999768214789999999999738998399997-------1789994788065---------044----4---------
Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGV-------GGPSLQKEGLVSL---------FDF----S--------- 56 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~gi-------GG~~m~~~G~~~~---------~~~----~--------- 56 (383)
-|+.||-++=|.- -.++++|.+. +-|+-=.|+ -||--|++....+ +++ .
T Consensus 19 ~yitaG~P~~~~t-~~~i~~l~~~-GaDiiElGiPFSDP~ADGpvIQ~A~~rAL~~G~~~~~~~~~~~~~r~~~~~~~~~ 96 (267)
T PRK13133 19 AYYMPEFPVAGAT-LPVLEALQES-GADIIELGIPYSDPIGDGPVIQNAAHTAIRNGVSVRSLLELVRKARNGEGCRKIT 96 (267)
T ss_pred EEECCCCCCHHHH-HHHHHHHHHC-CCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 7856869998999-9999999975-9998997899888666689999999999986998999999999997302434668
Q ss_pred -HCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHH
Q ss_conf -53110136746645999999999986100128886898511776-5799998663013463111100221100366355
Q gi|254780767|r 57 -ELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVCPSVWAWREGRAR 134 (383)
Q Consensus 57 -~l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k 134 (383)
.+-+||...++.++ -.++..+.+++.--|.+|..|-|-= .-.+...+++. |+..|+.|+|+- .+.|++
T Consensus 97 ~PivlMtY~N~i~~y-----G~e~F~~~~~~aGvdGlIipDLP~eE~~~~~~~~~~~--gl~~I~lvaPtt---~~eRi~ 166 (267)
T PRK13133 97 VPILLMGYCNPLIAY-----GGDCFLADAVKAGVDGLLIPDLPPEEAIDFLERAKNF--GLTVVFLISPVT---PPERIE 166 (267)
T ss_pred CCEEEHHHHHHHHHH-----CHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHC--CCCEEEEECCCC---CHHHHH
T ss_conf 778715645799984-----7799999999869878877899968889999999846--986024428999---999999
Q ss_pred HHHHHHH
Q ss_conf 7999998
Q gi|254780767|r 135 KMCAYIN 141 (383)
Q Consensus 135 ~~~~~~d 141 (383)
.+.+..+
T Consensus 167 ~i~~~s~ 173 (267)
T PRK13133 167 FIDSLST 173 (267)
T ss_pred HHHHCCC
T ss_conf 9984278
No 196
>pfam10906 DUF2697 Protein of unknown function (DUF2697). This is a eukaryotic family of proteins with unknown function.
Probab=67.27 E-value=3.7 Score=20.96 Aligned_cols=45 Identities=22% Similarity=0.362 Sum_probs=25.6
Q ss_pred EECHHHHHHHHHHHHHHHCCCCCCEEEECCCCC----CCCCCCHHHHHHH
Q ss_conf 851177657999986630134631111002211----0036635579999
Q gi|254780767|r 94 IVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVW----AWREGRARKMCAY 139 (383)
Q Consensus 94 ~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvW----AWr~~R~k~~~~~ 139 (383)
++||||||--+ +++..+-+|||.--+..|+.= -.++-|..|++.+
T Consensus 8 L~~Sp~Fh~fV-Rrvy~kvNgI~~~p~~~~~~~~~~~~y~PT~~qKf~Af 56 (68)
T pfam10906 8 LLDSPGFHRFV-RRVYAKVNGIKYTPEQHEETSMSEFLYKPTRLQKFNAF 56 (68)
T ss_pred HHCCHHHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 97377788999-99999970889877677544444430156505442255
No 197
>PRK13435 response regulator; Provisional
Probab=67.25 E-value=6.7 Score=19.30 Aligned_cols=77 Identities=27% Similarity=0.339 Sum_probs=48.8
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74599997682147899999999997389983999971789994788065044453110136746645999999999986
Q gi|254780767|r 3 SLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVE 82 (383)
Q Consensus 3 ~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~ 82 (383)
+|||+|+=-|..- +..+-+.|.+ .+++..|..+.. .+..+
T Consensus 1 ~mRILIVEDe~~i---~~~l~~~L~~---~G~~vv~~A~~~----------------------------------~eAl~ 40 (141)
T PRK13435 1 QLRVLIVEDEALI---ALELEKLLEE---AGHQVVGIASTS----------------------------------EQALA 40 (141)
T ss_pred CCEEEEECCCHHH---HHHHHHHHHH---CCCEEEEEECCH----------------------------------HHHHH
T ss_conf 9789998998999---9999999998---799799975999----------------------------------99999
Q ss_pred HCCCCCCCEEEE-ECHH-HHH-HHHHHHHHHHCCCCCCEEE
Q ss_conf 100128886898-5117-765-7999986630134631111
Q gi|254780767|r 83 LIVSSKPDVLLI-VDNP-DFT-HRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 83 ~i~~~~Pd~vi~-iD~p-gFn-l~lak~lkk~~~~ipvi~y 120 (383)
.++..+||++++ |-=| |.+ +.+++.++.. +++|+|+.
T Consensus 41 ~~~~~~PDlvllDi~LpdG~~G~e~~r~l~~~-~~ipvI~l 80 (141)
T PRK13435 41 LGRRAQPDVALVDIRLADGPTGVEVARRLSID-GGVEVIFM 80 (141)
T ss_pred HHHCCCCCEEEECCCCCCCCCHHHHHHHHHHC-CCCCEEEE
T ss_conf 97659998999788789999899999999875-99838999
No 198
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=66.84 E-value=6.5 Score=19.38 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=9.7
Q ss_pred CCCEEEEEECCCC
Q ss_conf 8745999976821
Q gi|254780767|r 2 NSLKIAVIAGEIS 14 (383)
Q Consensus 2 ~~mki~i~aGE~S 14 (383)
++|+|+|+--|++
T Consensus 4 ~~~~ILIVDDd~~ 16 (441)
T PRK10365 4 DNIDILVVDDDIS 16 (441)
T ss_pred CCCEEEEECCCHH
T ss_conf 9985999839899
No 199
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=66.75 E-value=9.9 Score=18.17 Aligned_cols=89 Identities=19% Similarity=0.233 Sum_probs=54.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 59999768214789999999999738998399997178999478806504445311013674664599999999998610
Q gi|254780767|r 5 KIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELI 84 (383)
Q Consensus 5 ki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i 84 (383)
|++|++|+.|-+..+.++...|++. +-++.|..+.|+- . ....++..+..
T Consensus 31 r~liVtd~~~~~~~~~~v~~~L~~~-gi~~~~~~~~~~p----------------------------t-~~~v~~~~~~~ 80 (366)
T PRK09423 31 RALLIADEFVLGIVGDTVEASLKDA-GLDVVFEVFNGEC----------------------------S-DNEIDRLVAIA 80 (366)
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCC----------------------------C-HHHHHHHHHHH
T ss_conf 5899989528998999999999867-9869997338999----------------------------9-99999999999
Q ss_pred CCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC
Q ss_conf 0128886898511776579999866301346311110022110
Q gi|254780767|r 85 VSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWA 127 (383)
Q Consensus 85 ~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWA 127 (383)
+++++|.||.|- .|=-+-.||.+... .++|+|-. |+.=+
T Consensus 81 ~~~~~D~IiavG-GGS~iD~AKaia~~-~~~P~i~I--PTtAg 119 (366)
T PRK09423 81 EENGCDVIIGIG-GGKTLDTAKAVADY-LGVPVVIV--PTIAS 119 (366)
T ss_pred HHCCCCEEEEEC-CHHHHHHHHHHHHH-CCCCEEEE--CCCCC
T ss_conf 864999899937-83887779999998-28997995--68666
No 200
>pfam04230 PS_pyruv_trans Polysaccharide pyruvyl transferase. Pyruvyl-transferases involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora.
Probab=66.61 E-value=10 Score=18.15 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEC
Q ss_conf 52035788763552331156688876275302540
Q gi|254780767|r 259 EQKKQVFMTCNAAMAASGTVILELALCGIPVVSIY 293 (383)
Q Consensus 259 ~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~Y 293 (383)
.+..+.++.|++.|+..==++.-+.+.|+|+|.+.
T Consensus 221 ~~~~~~i~~~~~vi~~RlH~~I~a~~~gvP~i~i~ 255 (258)
T pfam04230 221 EELLALISQADFVITTRLHGLIFALLLGVPFIVIA 255 (258)
T ss_pred HHHHHHHHCCCEEEEECHHHHHHHHHCCCCEEEEE
T ss_conf 99999997098999837379999997599989971
No 201
>PRK11173 two-component response regulator; Provisional
Probab=66.27 E-value=6.3 Score=19.45 Aligned_cols=79 Identities=10% Similarity=0.254 Sum_probs=46.6
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH
Q ss_conf 98745999976821478999999999973899839999717899947880650444531101367466459999999999
Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383)
Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383)
|.+-||+++--|++ .+..+...|... ++++.+.+-- .+.
T Consensus 1 m~~~~ILiVEDD~~---~~~~l~~~L~~~---G~~V~~a~~~-----------------------------------~ea 39 (237)
T PRK11173 1 MQTPHILIVEDELV---TRNTLKSIFEAE---GYDVFEATDG-----------------------------------AEM 39 (237)
T ss_pred CCCCEEEEEECCHH---HHHHHHHHHHHC---CCEEEEECCH-----------------------------------HHH
T ss_conf 99998999959899---999999999988---9999998999-----------------------------------999
Q ss_pred HHHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEE
Q ss_conf 86100128886898-5117765-79999866301346311110
Q gi|254780767|r 81 VELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYV 121 (383)
Q Consensus 81 ~~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv 121 (383)
.+.+.++.||++|+ +.-||.| +.+++.+|+.. .+|+|...
T Consensus 40 ~~~l~~~~~DlvilDi~lp~~~G~~l~~~iR~~~-~~piI~lt 81 (237)
T PRK11173 40 HQILSENDINLVIMDINLPGKNGLLLARELREQA-NVALMFLT 81 (237)
T ss_pred HHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCC-CCCEEEEE
T ss_conf 9998638998999938999887303555665168-84789994
No 202
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=66.22 E-value=10 Score=18.10 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=32.5
Q ss_pred HHHHHHHHHCCCCCCCEEE-EECHHHHH----HHHHHHHHHHCCCCCCEEEECCC
Q ss_conf 9999998610012888689-85117765----79999866301346311110022
Q gi|254780767|r 75 FRINQTVELIVSSKPDVLL-IVDNPDFT----HRVAKRVRKKMPNLPIINYVCPS 124 (383)
Q Consensus 75 ~~~~~~~~~i~~~~Pd~vi-~iD~pgFn----l~lak~lkk~~~~ipvi~yv~Pq 124 (383)
..+++..+...+...+.+| -||+||=. +.+.+.++.. .+|++-||.|+
T Consensus 16 ~~l~r~l~~A~~~~a~~ivl~idTpGG~v~~~~~I~~~I~~~--~~pvv~~V~~~ 68 (178)
T cd07021 16 AFVERALKEAKEEGADAVVLDIDTPGGRVDSALEIVDLILNS--PIPTIAYVNDR 68 (178)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHC--CCCEEEEECCC
T ss_conf 999999999996899789999979998689999999999848--99999999992
No 203
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=66.14 E-value=10 Score=18.09 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=15.1
Q ss_pred HHHHHHHHHCCCEEEECCCC
Q ss_conf 56688876275302540577
Q gi|254780767|r 277 TVILELALCGIPVVSIYKSE 296 (383)
Q Consensus 277 TaTLE~al~g~P~IV~Yk~~ 296 (383)
+|..||.-+|+|.|-+-.|+
T Consensus 171 ~AV~EA~kl~IPvI~ivDTn 190 (255)
T PRK05299 171 IAVKEARKLGIPVVAIVDTN 190 (255)
T ss_pred HHHHHHHHCCCCEEEEECCC
T ss_conf 99999997599888762489
No 204
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=66.09 E-value=10 Score=18.09 Aligned_cols=71 Identities=14% Similarity=0.154 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 46645999999999986100128886898511776579999866301346311110022110036635579999986401
Q gi|254780767|r 66 VVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVIS 145 (383)
Q Consensus 66 vl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ 145 (383)
..+++|++-...+--.+.|..-+||+||.-+.. ..-+....|++. |||+++. . ......+.+.+..+-.
T Consensus 55 ~a~~lp~VG~~~~~~~E~IlaL~PDLVia~~~~-~~~~~~~~L~~~--GI~v~~~-~-------~~sl~di~~~i~~lG~ 123 (265)
T PRK03379 55 QAQKIEQVSTWQGMNLERIVALKPDLVLAWRGG-NAERQVDQLASL--GIKVMWV-D-------ATSIEQIADALRQLAP 123 (265)
T ss_pred HHHCCCCCCCCCCCCHHHHHHHCCCEEEEECCC-CCHHHHHHHHHC--CCEEEEC-C-------CCCHHHHHHHHHHHHH
T ss_conf 785487027888989999996399989995688-958999999816--9758835-9-------9999999999999998
Q ss_pred CC
Q ss_conf 56
Q gi|254780767|r 146 IL 147 (383)
Q Consensus 146 if 147 (383)
++
T Consensus 124 ~~ 125 (265)
T PRK03379 124 WS 125 (265)
T ss_pred HC
T ss_conf 65
No 205
>PRK13131 consensus
Probab=65.69 E-value=10 Score=18.04 Aligned_cols=56 Identities=18% Similarity=0.187 Sum_probs=25.0
Q ss_pred HHHHHHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHH
Q ss_conf 99986100128886898511776-57999986630134631111002211003663557999
Q gi|254780767|r 78 NQTVELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCA 138 (383)
Q Consensus 78 ~~~~~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~ 138 (383)
++..+.+++..-|.+|..|-|-= .-.+.+.+++. |+..|+.|+|+- .+.|++++.+
T Consensus 105 e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~--~l~~I~lvaPtt---~~~Ri~~i~~ 161 (257)
T PRK13131 105 DGFYAQAKECGVDSVLIADMPLIEKELVIKSAQKH--QIKQIFIASPNA---SVKDLEQVAT 161 (257)
T ss_pred HHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHC--CCCEEEEECCCC---CHHHHHHHHH
T ss_conf 99999998659985655899967889999999977--984799728999---8899999983
No 206
>pfam00056 Ldh_1_N lactate/malate dehydrogenase, NAD binding domain. L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.
Probab=65.38 E-value=9 Score=18.43 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=30.2
Q ss_pred CCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCC
Q ss_conf 387430123051118999876402735126201663
Q gi|254780767|r 200 GSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVS 235 (383)
Q Consensus 200 GSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~ 235 (383)
.||..+++.|.+++.+.++.+.+..|+-.+++.+.|
T Consensus 85 ~~R~dll~~Na~I~~~i~~~i~~~~p~~ivivvtNP 120 (142)
T pfam00056 85 MTRLDLLNRNAGIFKDIVPAIAKSAPDAIVLVVSNP 120 (142)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 877899997469999999999976998199994594
No 207
>pfam07454 SpoIIP Stage II sporulation protein P (SpoIIP). This family contains the bacterial stage II sporulation protein P (SpoIIP) (approximately 350 residues long). It has been shown that a block in polar cytokinesis in Bacillus subtilis is mediated partly by transcription of spoIID, spoIIM and spoIIP. This inhibition of polar division is involved in the locking in of asymmetry after the formation of a polar septum during sporulation. Engulfment in Bacillus subtilis is mediated by two complementary systems: the first includes the proteins SpoIID, SpoIIM and SpoIIP (DMP) which carry out the engulfment, and the second includes the SpoIIQ-SpoIIIAGH (Q-AH) zipper, that recruits other proteins to the septum in a second-phase of the engulfment. The course of events follows as the incorporation firstly of SpoIIB into the septum during division to serve directly or indirectly as a landmark for localising SpoIIM and then SpoIIP and SpoIID to the septum. SpoIIP and SpoIID interact together to
Probab=65.24 E-value=11 Score=17.98 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=23.2
Q ss_pred EEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 5998538743012305111899987640273512620
Q gi|254780767|r 195 ILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSL 231 (383)
Q Consensus 195 I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i 231 (383)
|.+.=|++....+.++-.-.+....+.+.+|.+.--+
T Consensus 179 i~fVvG~~np~~~~N~~fA~~l~~~~~~~yPGl~rgi 215 (258)
T pfam07454 179 IMFVVGRKNPNYEKNLEFAKKLKAKADEKYPGLSRGI 215 (258)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 9999778998999999999999999997789864212
No 208
>cd01140 FatB Siderophore binding protein FatB. These proteins have been shown to function as ABC-type initial receptors in the siderophore-mediated iron uptake in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=65.12 E-value=5.3 Score=19.99 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=21.5
Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 8610012888689851177657999986630134631111002
Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCP 123 (383)
Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~P 123 (383)
.+.|..-+||+||.-+... .....+.+. -|++++..+
T Consensus 65 ~E~I~~l~PDLIi~~~~~~---~~~~~l~~i---ap~v~~~~~ 101 (270)
T cd01140 65 LEAIAALKPDLIIIGGRLA---EKYDELKKI---APTIDLGAD 101 (270)
T ss_pred HHHHHHCCCCEEEECCCCH---HHHHHHHHH---CCEEEEECC
T ss_conf 9999713999999838417---889999854---775798458
No 209
>KOG2941 consensus
Probab=65.01 E-value=11 Score=17.95 Aligned_cols=132 Identities=11% Similarity=0.188 Sum_probs=76.4
Q ss_pred HHHCCCHHHHHHHHH-------HCCCCCEEEECCCCCHHHHHHHHHHHCCCC-CEEE---EECCCCHHHHHHHHHHHC--
Q ss_conf 230511189998764-------027351262016633688999999604888-5055---205520357887635523--
Q gi|254780767|r 207 YKILPFFESAVASLV-------KRNPFFRFSLVTVSSQENLVRCIVSKWDIS-PEII---IDKEQKKQVFMTCNAAMA-- 273 (383)
Q Consensus 207 ~~~lP~~l~~~~~l~-------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~i~---~~~~~~~~~l~~sd~ai~-- 273 (383)
...+-+++++++... ...|.+.++|-.-...++...+.+.+.+.. ..+. ..-++...++..||+.++
T Consensus 267 DEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGPlkE~Y~~~I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLH 346 (444)
T KOG2941 267 DEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGPLKEKYSQEIHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCLH 346 (444)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHCCCCCEEEE
T ss_conf 63278999999864555401357997379999278831689999987715321036502232110066763143134763
Q ss_pred --CCHHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCC------HHHHHHHHHHHHC
Q ss_conf --31156688876275302540577410000102467610230244078426124205489------8999999999844
Q gi|254780767|r 274 --ASGTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIR------SEALVRWIERLSQ 345 (383)
Q Consensus 274 --~SGTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~------~~~i~~~~~~ll~ 345 (383)
+|| +..||=|+=- --.+||-+-.+-...-||+++.-| .+++++.+..+.+
T Consensus 347 tSSSG--------LDLPMKVVDM--------------FGcglPvcA~~fkcl~ELVkh~eNGlvF~Ds~eLa~ql~~lf~ 404 (444)
T KOG2941 347 TSSSG--------LDLPMKVVDM--------------FGCGLPVCAVNFKCLDELVKHGENGLVFEDSEELAEQLQMLFK 404 (444)
T ss_pred ECCCC--------CCCCHHHHHH--------------HCCCCCEEEECCHHHHHHHHCCCCCEEECCHHHHHHHHHHHHH
T ss_conf 04766--------6764667776--------------2578743664565389998567785375059999999999985
Q ss_pred ----CHHHHHHHHHHHHHH
Q ss_conf ----989999999999999
Q gi|254780767|r 346 ----DTLQRRAMLHGFENL 360 (383)
Q Consensus 346 ----d~~~r~~~~~~~~~~ 360 (383)
|.+..++...+.++-
T Consensus 405 ~fp~~a~~l~~lkkn~~e~ 423 (444)
T KOG2941 405 NFPDNADELNQLKKNLREE 423 (444)
T ss_pred CCCCCHHHHHHHHHHHHHH
T ss_conf 4999878999999865787
No 210
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=64.75 E-value=7.5 Score=18.98 Aligned_cols=18 Identities=6% Similarity=0.126 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHCCCCEEEE
Q ss_conf 9999999997389983999
Q gi|254780767|r 19 AGDLIKSLKEMVSYPINLV 37 (383)
Q Consensus 19 ~a~li~~Lk~~~~~~~~~~ 37 (383)
|-.+++.+++. ++++.+.
T Consensus 63 Glell~~ir~~-~p~~pvI 80 (457)
T PRK11361 63 GIKALKEMRSH-ETRTPVI 80 (457)
T ss_pred HHHHHHHHHHC-CCCCCEE
T ss_conf 99999999820-9899389
No 211
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=64.74 E-value=2.2 Score=22.47 Aligned_cols=155 Identities=8% Similarity=0.138 Sum_probs=79.7
Q ss_pred HHCCCCCCCEEEEECH-----HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHH-HHCCCCCCCHHHHH
Q ss_conf 6100128886898511-----77657999986630134631111002211003663557999998-64015677422320
Q gi|254780767|r 82 ELIVSSKPDVLLIVDN-----PDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYIN-QVISILPFEKEVMQ 155 (383)
Q Consensus 82 ~~i~~~~Pd~vi~iD~-----pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d-~~~~ifpFE~~~f~ 155 (383)
+..+..+|++++.|-. -|.-+++.. ++..|+||+-|-.|-+= ++...+..| .+..+++-.++.=.
T Consensus 85 ~ia~~~~~~~I~vigtC~~E~ig~~lell~---~~~~gv~Ii~~~~~G~~------t~a~~~~~da~~~~~~~r~~~~~~ 155 (416)
T cd01980 85 KLADPPAYTFIPVISLCVAETAGVAEELLP---KQIDGVRVILVRGPAFP------IHSHPEAKDVGAMLLLARFEDFDG 155 (416)
T ss_pred HHHCCCCCCEEEEECCCCHHHHCCCHHHCH---HHCCCCEEEEEECCCCC------CEECCHHHHHHHHHHCCCCCCCCC
T ss_conf 860768888899965661765376743375---55189659996358850------031201589999986355521147
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHH---------CCCHHHHHHHHHHCCCC
Q ss_conf 025531476388211221001355888976187655650599853874301230---------51118999876402735
Q gi|254780767|r 156 RLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKI---------LPFFESAVASLVKRNPF 226 (383)
Q Consensus 156 k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~---------lP~~l~~~~~l~~~~~~ 226 (383)
....-...-+|. +.+-... .-....++.|+.. ...||+-|..|+-.. -|.+-+++..+..+...
T Consensus 156 p~~~~~l~l~G~-l~p~d~~--~i~~~L~~mGi~~----~~~LP~r~~~eLp~~g~~~~va~~~PFl~~Ta~~l~~rGr~ 228 (416)
T cd01980 156 PVAEPSLALLGE-MFPADPV--AIGSVLERMGLAA----VPVVPTREWRELYAAGDAAAVAALHPFYTATIRELEEAGRP 228 (416)
T ss_pred CCCCCCEEEEEC-CCCCCHH--HHHHHHHHCCCCC----CCCCCCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 878987589841-6987589--9999999749974----55689986434554477459997476306789999980983
Q ss_pred CEEEECCC-CCHHHHHHHHHHHCCCCC
Q ss_conf 12620166-336889999996048885
Q gi|254780767|r 227 FRFSLVTV-SSQENLVRCIVSKWDISP 252 (383)
Q Consensus 227 ~~~~i~~~-~~~~~~~~~~~~~~~~~~ 252 (383)
+.--.|.. .....+++.+-..++++.
T Consensus 229 i~~~~PiG~eGT~aWL~ai~~~fgv~~ 255 (416)
T cd01980 229 IVSGAPVGADGTAAWLEAVGEALGLDM 255 (416)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCH
T ss_conf 057899581489999999999949898
No 212
>PRK10481 hypothetical protein; Provisional
Probab=64.61 E-value=8.1 Score=18.73 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECHHHH
Q ss_conf 999999999986100128886898511776
Q gi|254780767|r 71 PQFIFRINQTVELIVSSKPDVLLIVDNPDF 100 (383)
Q Consensus 71 ~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF 100 (383)
.++.....++.+.+.+...|++++.....|
T Consensus 72 ~~v~~~lq~~i~~le~~G~d~ilLlCTG~F 101 (224)
T PRK10481 72 QKVERDLQSVIEVLDNQGYDVILLLCTGNF 101 (224)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 997888999999998679989999724678
No 213
>pfam07302 AroM AroM protein. This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL. The function of this family is unknown.
Probab=64.20 E-value=8.2 Score=18.71 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECHHHHH
Q ss_conf 9999999999861001288868985117765
Q gi|254780767|r 71 PQFIFRINQTVELIVSSKPDVLLIVDNPDFT 101 (383)
Q Consensus 71 ~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFn 101 (383)
.++.....++.+.+.+...|++++...-.|.
T Consensus 70 ~~v~~~lq~~i~~Le~~G~d~ilLlCTG~F~ 100 (221)
T pfam07302 70 QKIERRLQQVIEKLDKEGVDVILLLCTGEFP 100 (221)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 9988989999999986799899996147789
No 214
>pfam01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold. This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.
Probab=63.94 E-value=11 Score=17.82 Aligned_cols=90 Identities=17% Similarity=0.281 Sum_probs=51.8
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45999976821478999999999973899839999717899947880650444531101367466459999999999861
Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVEL 83 (383)
Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~ 83 (383)
|||.++....-|-.| ++.+++. .+++++.|+..+.-+.. +.. -+.+++- .+....+.
T Consensus 1 iki~iiG~G~~g~~~----~~~~~~~-~~~~~i~ai~d~~~~~~--~~~--~~~~~~~--------------~~~~~~~~ 57 (120)
T pfam01408 1 LRVGIVGAGKIGRRH----LRALNES-QDGAELVGVLDPDPARA--EAV--AESFGVP--------------AYSDLEEL 57 (120)
T ss_pred CEEEEEECHHHHHHH----HHHHHHC-CCCCEEEEEECCCHHHH--HHH--HHHHCCC--------------EECCHHHH
T ss_conf 989999077999999----9999855-99978999982999999--999--9983996--------------78869999
Q ss_pred CCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 00128886898511776579999866301346311
Q gi|254780767|r 84 IVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPII 118 (383)
Q Consensus 84 i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi 118 (383)
+...++|+|+..-.++.+..++.++=++ |++++
T Consensus 58 l~~~~iD~v~I~tp~~~H~~~~~~~l~~--g~~v~ 90 (120)
T pfam01408 58 LADPDVDAVSVATPPGLHFELALAALEA--GKHVL 90 (120)
T ss_pred HHCCCCCEEEECCCHHHHHHHHHHHHHH--CCEEE
T ss_conf 7377889899908746189999999981--99899
No 215
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=63.80 E-value=9.7 Score=18.23 Aligned_cols=35 Identities=26% Similarity=0.270 Sum_probs=19.8
Q ss_pred CCCCCCEEEEE-CHH--HHHHHHHHHHHHHCCCCCCEE
Q ss_conf 01288868985-117--765799998663013463111
Q gi|254780767|r 85 VSSKPDVLLIV-DNP--DFTHRVAKRVRKKMPNLPIIN 119 (383)
Q Consensus 85 ~~~~Pd~vi~i-D~p--gFnl~lak~lkk~~~~ipvi~ 119 (383)
++.+||+|.+- =++ .+..++++.+|+..++++++-
T Consensus 36 ~~~~pdvvg~s~~~~~~~~~~~~~~~~k~~~p~~~iv~ 73 (127)
T cd02068 36 ELLKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVV 73 (127)
T ss_pred HCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 64996999999768899999999999999789978998
No 216
>TIGR00661 MJ1255 conserved hypothetical protein; InterPro: IPR005262 The function of this domain is unknown. A small region (~50 amino acids) within the domain appears to be related to a family of sugar transferases. .
Probab=63.32 E-value=11 Score=17.75 Aligned_cols=271 Identities=18% Similarity=0.266 Sum_probs=139.7
Q ss_pred EEEEECCCCHHHHHHH-HHHHHHHHCCCCEEEEEECCHH---HHHCCCEEEECHHHCCEEEH---HHHHHH-------HH
Q ss_conf 9999768214789999-9999997389983999971789---99478806504445311013---674664-------59
Q gi|254780767|r 6 IAVIAGEISGDLLAGD-LIKSLKEMVSYPINLVGVGGPS---LQKEGLVSLFDFSELSVIGI---MQVVRH-------LP 71 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~-li~~Lk~~~~~~~~~~giGG~~---m~~~G~~~~~~~~~l~v~G~---~evl~~-------~~ 71 (383)
++-+|||-.|+..-+. +..++++. +.++.+..-|-+. +...|.........+...|- ++.++. .|
T Consensus 3 ~~~~~g~g~g~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 81 (353)
T TIGR00661 3 LYGVCGEGFGHAARSGAIGDALKEQ-DYEVDYLASGRPAENYLSKEGFGDFETFPGLNLAGEDGKVNDVKTFLRKKELLP 81 (353)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCC-CCEEEEEECCCCHHHHHHHHHCCHHHHHCCCEEECCCCCCHHHHHHHHHHCCCH
T ss_conf 3420257743035677778764201-110445532751244555430001222113112015664025777776402450
Q ss_pred -HHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC---------CCCCCH-HHH-HHH
Q ss_conf -99999999986100128886898511776579999866301346311110022110---------036635-579-999
Q gi|254780767|r 72 -QFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWA---------WREGRA-RKM-CAY 139 (383)
Q Consensus 72 -~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWA---------Wr~~R~-k~~-~~~ 139 (383)
.+++.++...+.+...+||+++. |+.-...-.++.++.-..++.-.|.+...... |....+ +.+ .+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~d~~~~-d~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (353)
T TIGR00661 82 RDLKENLRLEVKILRDFGPDLILS-DFEPYTAVAAKLLKIPLIGISNLHVINQNYFLYPLPLKGDKWPDEAVLRHFAPRP 160 (353)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEE-CCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 358999999888776417742540-3204678887764043000032012111012111011134556788888764323
Q ss_pred HHHHCCCCCCCHHHHHCCCCCCEEECCC---CCCCC-CCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHH
Q ss_conf 9864015677422320025531476388---21122-1001355888976187655650599853874301230511189
Q gi|254780767|r 140 INQVISILPFEKEVMQRLGGPPTTFVGH---PLSSS-PSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFES 215 (383)
Q Consensus 140 ~d~~~~ifpFE~~~f~k~~~~~~~fVGH---Pl~d~-~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~ 215 (383)
...++.-|+|+..... + +++..+.-. |+... +. ...--..+.++..+||+... . -+++
T Consensus 161 ~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~p~~~~~~~----------~~~~~~~~~~~~~~~g~~~~--~----~~~~ 222 (353)
T TIGR00661 161 ERLLLPWYPFPEPILP-Y-NLPIIKAPEFIGPLLRYDVD----------DLDPYGGDYILVYLGGFENN--N----KLLE 222 (353)
T ss_pred HHHCCCCCCCCCCCCC-C-CCHHHHHHHHHHHHHHHHHH----------HCCCCCCCEEEEEECCCHHH--H----HHHH
T ss_conf 4530232123210242-1-11023101454456665443----------10012464478973562136--8----9999
Q ss_pred HHHHHH-HCCCCCEEEECCCCCHHHHHHHH-HHHC-CCCCEE-EEECCCCHHHHHHHHHHHCCCHHHHH-HHHHHCCCEE
Q ss_conf 998764-02735126201663368899999-9604-888505-52055203578876355233115668-8876275302
Q gi|254780767|r 216 AVASLV-KRNPFFRFSLVTVSSQENLVRCI-VSKW-DISPEI-IIDKEQKKQVFMTCNAAMAASGTVIL-ELALCGIPVV 290 (383)
Q Consensus 216 ~~~~l~-~~~~~~~~~i~~~~~~~~~~~~~-~~~~-~~~~~i-~~~~~~~~~~l~~sd~ai~~SGTaTL-E~al~g~P~I 290 (383)
....+. +.+-+.++++-.........+.. +... ..+..+ .+..++....+..|...++..|-.+. |+..+|.|.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~ 302 (353)
T TIGR00661 223 LLGKIDLKNNLNVKFVCYGPEVPGKLLRDLNLNELKDENVELRRLNEGDFKEDLENAAGVITNGGFSLPSEALALGKPLL 302 (353)
T ss_pred HHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEE
T ss_conf 88754320256137886054213467642131001356425886031257887755433111575023566765156413
Q ss_pred EECCCC
Q ss_conf 540577
Q gi|254780767|r 291 SIYKSE 296 (383)
Q Consensus 291 V~Yk~~ 296 (383)
+.--.+
T Consensus 303 ~~p~~~ 308 (353)
T TIGR00661 303 VVPLLG 308 (353)
T ss_pred EECCCC
T ss_conf 411444
No 217
>KOG1387 consensus
Probab=63.25 E-value=11 Score=17.74 Aligned_cols=255 Identities=14% Similarity=0.195 Sum_probs=119.5
Q ss_pred HHHHHHHCCCCCCCEEE-EECHHHHHHHHHHHHHHHCCCCCCEEEEC-CCC----------------CCCCCCCHHHHHH
Q ss_conf 99998610012888689-85117765799998663013463111100-221----------------1003663557999
Q gi|254780767|r 77 INQTVELIVSSKPDVLL-IVDNPDFTHRVAKRVRKKMPNLPIINYVC-PSV----------------WAWREGRARKMCA 138 (383)
Q Consensus 77 ~~~~~~~i~~~~Pd~vi-~iD~pgFnl~lak~lkk~~~~ipvi~yv~-Pqv----------------WAWr~~R~k~~~~ 138 (383)
+--..+.+....||+.| ++-|| |.+++-++++ ++|++-||- |.+ -+|++ + -
T Consensus 139 mIl~~Eai~r~~Pdi~IDtMGY~-fs~p~~r~l~----~~~V~aYvHYP~iS~DML~~l~qrq~s~~l~~~K-----l-a 207 (465)
T KOG1387 139 MILAFEAIIRFPPDIFIDTMGYP-FSYPIFRRLR----RIPVVAYVHYPTISTDMLKKLFQRQKSGILVWGK-----L-A 207 (465)
T ss_pred HHHHHHHHHHCCCHHEEECCCCC-CHHHHHHHHC----CCCEEEEEECCCCCHHHHHHHHHHHHCCHHHHHH-----H-H
T ss_conf 99999999818833168547874-0008999871----6953899845603288999998621012113577-----8-9
Q ss_pred HHHHHCCCCCCCHHHHHCCCCCCEEEC-------CCCCCC--------CCCCCCCHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 998640156774223200255314763-------882112--------21001355888976187655650599853874
Q gi|254780767|r 139 YINQVISILPFEKEVMQRLGGPPTTFV-------GHPLSS--------SPSILEVYSQRNKQRNTPSQWKKILLLPGSRA 203 (383)
Q Consensus 139 ~~d~~~~ifpFE~~~f~k~~~~~~~fV-------GHPl~d--------~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~ 203 (383)
|.....+ .|+. .|..+.+| -|-+.. .+-+..+.++..+..+....+...+|--|-=+
T Consensus 208 Y~rlFa~-------lY~~-~G~~ad~vm~NssWT~nHI~qiW~~~~~~iVyPPC~~e~lks~~~te~~r~~~ll~l~Q~R 279 (465)
T KOG1387 208 YWRLFAL-------LYQS-AGSKADIVMTNSSWTNNHIKQIWQSNTCSIVYPPCSTEDLKSKFGTEGERENQLLSLAQFR 279 (465)
T ss_pred HHHHHHH-------HHHH-CCCCCEEEEECCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHCCCCCCCEEEEEEEECC
T ss_conf 9999999-------9986-1464229996266567789998602621487289887888877424577604789876037
Q ss_pred CCHHHHCCCHHHHHHHHHHC----CCCCEEEECCC--CCHH-HH---HHHHHHHCCCCCEEEEECC----CCHHHHHHHH
Q ss_conf 30123051118999876402----73512620166--3368-89---9999960488850552055----2035788763
Q gi|254780767|r 204 QEIYKILPFFESAVASLVKR----NPFFRFSLVTV--SSQE-NL---VRCIVSKWDISPEIIIDKE----QKKQVFMTCN 269 (383)
Q Consensus 204 ~EI~~~lP~~l~~~~~l~~~----~~~~~~~i~~~--~~~~-~~---~~~~~~~~~~~~~i~~~~~----~~~~~l~~sd 269 (383)
.| ++|=-+-+++....... -+..+.+++.. ++.+ +. ++....+.+++.++....+ +.-+.+..|.
T Consensus 280 PE-KnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~ 358 (465)
T KOG1387 280 PE-KNHKILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKNVPYEKLVELLGKAT 358 (465)
T ss_pred CC-CCCHHHHHHHHHHHCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCCE
T ss_conf 65-55588999999975182010468825999705478113999998887898628754538995598799999861155
Q ss_pred HHHCC-----CHHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHH
Q ss_conf 55233-----1156688876275302540577410000102467610230244078426124205489899999999984
Q gi|254780767|r 270 AAMAA-----SGTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLS 344 (383)
Q Consensus 270 ~ai~~-----SGTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll 344 (383)
+.+-+ -|-...|.++.|.=+|+---.+|+-- +-.++.|=++= |+- -|.++-++.+.++.
T Consensus 359 iGvh~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lD-----IV~~~~G~~tG---------Fla--~t~~EYaE~iLkIv 422 (465)
T KOG1387 359 IGVHTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLD-----IVTPWDGETTG---------FLA--PTDEEYAEAILKIV 422 (465)
T ss_pred EEHHHHHHHHCCHHHHHHHHCCCEEEEECCCCCCEE-----EEECCCCCCCE---------EEC--CCHHHHHHHHHHHH
T ss_conf 545244552035568998755726887078997323-----64045786010---------115--87289999999999
Q ss_pred C-CHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 4-9899999999999999983899
Q gi|254780767|r 345 Q-DTLQRRAMLHGFENLWDRMNTK 367 (383)
Q Consensus 345 ~-d~~~r~~~~~~~~~~~~~Lg~~ 367 (383)
. |++.|..++++.+.-..+.|+.
T Consensus 423 ~~~~~~r~~~r~~AR~s~~RFsE~ 446 (465)
T KOG1387 423 KLNYDERNMMRRNARKSLARFGEL 446 (465)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 719888888899999999886688
No 218
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=62.64 E-value=7.7 Score=18.89 Aligned_cols=61 Identities=13% Similarity=0.228 Sum_probs=37.3
Q ss_pred HHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCH
Q ss_conf 986100128886898511776579999866301346311110022110036635579999986401567742
Q gi|254780767|r 80 TVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEK 151 (383)
Q Consensus 80 ~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~ 151 (383)
=++.|..-+||+|+.- -++.-...+.|++. ||||+++-+|+ .+..+.+.+..+-.++.-|.
T Consensus 111 NvE~IiaL~PDLVla~--~~~~~~~v~~L~~~--GI~V~v~~~a~-------SiddV~~~I~~iG~~tg~~e 171 (364)
T PRK09534 111 NVEAVVGLDPDLVLAP--NTVRNDTVTRLRSA--GITVFQFRAAT-------SIDGVVEKTATIGRLTGNCA 171 (364)
T ss_pred CHHHHHCCCCCEEEEC--CCCCHHHHHHHHHC--CCEEEEECCCC-------CHHHHHHHHHHHHHHHCCHH
T ss_conf 9999961699889965--87756789999976--99699918988-------99999999999999839856
No 219
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains; InterPro: IPR005690 Two integral outer envelope GTPases, Toc34 and Toc86, are proposed to regulate the recognition and translocation of nuclear-encoded preproteins during the early stages of protein import into chloroplasts. The long precursor of the 86K protein is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation . The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0009707 chloroplast outer membrane.
Probab=62.18 E-value=3.8 Score=20.89 Aligned_cols=66 Identities=24% Similarity=0.425 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEE----EECCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 9999999999861001288868985117765799998663013463111----100221100366355799999864015
Q gi|254780767|r 71 PQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIIN----YVCPSVWAWREGRARKMCAYINQVISI 146 (383)
Q Consensus 71 ~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~----yv~PqvWAWr~~R~k~~~~~~d~~~~i 146 (383)
.+=.|.++..++.+++..||+|+-|| ||--.-|-. .+.|++- -..|+||- + ..=...|-++.
T Consensus 190 s~N~K~L~sVK~~~KK~PPDIVLY~D------RLD~Q~RD~-~dlPlLRti~~~lGpsIW~---N----~IV~LTHAAS~ 255 (772)
T TIGR00993 190 SKNEKILSSVKKLIKKNPPDIVLYVD------RLDLQTRDL-NDLPLLRTITDVLGPSIWK---N----AIVTLTHAASA 255 (772)
T ss_pred HHCHHHHHHHHHHHCCCCCCEEEEEC------CCCCCCCCC-CCCCHHHHHHHHHCCHHHH---H----HHHHHHHCCCC
T ss_conf 30206888888863179696698600------223334656-6774475777561610132---0----43211100368
Q ss_pred CCCC
Q ss_conf 6774
Q gi|254780767|r 147 LPFE 150 (383)
Q Consensus 147 fpFE 150 (383)
=|=|
T Consensus 256 PPDg 259 (772)
T TIGR00993 256 PPDG 259 (772)
T ss_pred CCCC
T ss_conf 7678
No 220
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=61.95 E-value=8.8 Score=18.52 Aligned_cols=35 Identities=14% Similarity=0.276 Sum_probs=16.7
Q ss_pred CCCCCCEEEE-ECHHHHH-HHHHHHHHHHC--CCCCCEE
Q ss_conf 0128886898-5117765-79999866301--3463111
Q gi|254780767|r 85 VSSKPDVLLI-VDNPDFT-HRVAKRVRKKM--PNLPIIN 119 (383)
Q Consensus 85 ~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~--~~ipvi~ 119 (383)
.+..||++++ +.-|+.| +.+.+.+|+.. .++|++-
T Consensus 47 ~~~~~Dlil~D~~MP~~dG~el~~~ir~~~~~~~~Pii~ 85 (129)
T PRK10610 47 QAGGFGFVISDWNMPNMDGLELLKTIRADGAMSALPVLM 85 (129)
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEE
T ss_conf 858999999818999998999999998577778996899
No 221
>PRK03877 consensus
Probab=61.91 E-value=12 Score=17.58 Aligned_cols=120 Identities=22% Similarity=0.235 Sum_probs=62.4
Q ss_pred CCCCEEEEEECCCCHHHHHHHHH-HHHHHH-CCCCEEEEEECCHHHHH-----CCCE----EEECHHHC-------CEE-
Q ss_conf 98745999976821478999999-999973-89983999971789994-----7880----65044453-------110-
Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLI-KSLKEM-VSYPINLVGVGGPSLQK-----EGLV----SLFDFSEL-------SVI- 61 (383)
Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li-~~Lk~~-~~~~~~~~giGG~~m~~-----~G~~----~~~~~~~l-------~v~- 61 (383)
|+| +|.|+.||++| .|..++ ++|++. .....++.=+|....-+ .|.+ .+.+.++. .++
T Consensus 1 mKP-~IaIT~GDPaG--IGpEIilKal~~~~~~~~~~~vvigd~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~ 77 (328)
T PRK03877 1 MKP-IIGITMGDAAG--VGPEIIVKALADKSVYEQCRPLVIGDAKRLERAGRIVGSELKVRAIQDPDEARFEFGTIDCID 77 (328)
T ss_pred CCC-EEEEECCCCCH--HHHHHHHHHHHCCHHHCCCCEEEEECHHHHHHHHHHCCCCCCEEECCCHHHHHCCCCCCEEEE
T ss_conf 999-79991588537--699999999968113505999999789999999998299971467389778523589315874
Q ss_pred ----------EHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE------------ECHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf ----------136746645999999999986100128886898------------5117765799998663013463111
Q gi|254780767|r 62 ----------GIMQVVRHLPQFIFRINQTVELIVSSKPDVLLI------------VDNPDFTHRVAKRVRKKMPNLPIIN 119 (383)
Q Consensus 62 ----------G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~------------iD~pgFnl~lak~lkk~~~~ipvi~ 119 (383)
|-...- +=...+..++...+.+++.+.|++|+ .+|||-.--||+..... -+..-
T Consensus 78 ~~~~~~~~~~G~~~~~-~g~~~~~sl~~A~~~~~~g~~~alVT~PInK~~i~~ag~~f~GHTE~La~~~~~~---~~~Mm 153 (328)
T PRK03877 78 LDLLPADLPFGKVSAV-AGDAAFRYIERAVELAKAGKIDAICTAPLNKEALHAGGHMFPGHTEILAHLTGTE---EVSMM 153 (328)
T ss_pred CCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCC---CEEEE
T ss_conf 5546677788987988-9999999999999999749868799678067889857999898199999886478---72577
Q ss_pred EECCCCCC
Q ss_conf 10022110
Q gi|254780767|r 120 YVCPSVWA 127 (383)
Q Consensus 120 yv~PqvWA 127 (383)
++++..|.
T Consensus 154 l~~~~LrV 161 (328)
T PRK03877 154 LVSPKLKV 161 (328)
T ss_pred EECCCCEE
T ss_conf 85598689
No 222
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=61.71 E-value=12 Score=17.56 Aligned_cols=44 Identities=9% Similarity=0.027 Sum_probs=27.8
Q ss_pred HHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 999999861001288868985117765799998663013463111
Q gi|254780767|r 75 FRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIIN 119 (383)
Q Consensus 75 ~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~ 119 (383)
+......+.+.+.+.++||+-.+.+-.+..+..+-.+ .++|++.
T Consensus 54 ~a~~~a~~Lv~~~~V~aviG~~~S~~~~a~~~~v~~~-~~v~~is 97 (312)
T cd06346 54 AGVAAATKLVNVDGVPGIVGAACSGVTIAALTSVAVP-NGVVMIS 97 (312)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH-CCCCEEC
T ss_conf 9999999876408806974676618889889999986-5981762
No 223
>PRK13358 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=61.69 E-value=10 Score=18.01 Aligned_cols=32 Identities=16% Similarity=0.336 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECHHHHHH
Q ss_conf 99999999998610012888689851177657
Q gi|254780767|r 71 PQFIFRINQTVELIVSSKPDVLLIVDNPDFTH 102 (383)
Q Consensus 71 ~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl 102 (383)
.+++..+.++.+++++.+||++|.+..=.||-
T Consensus 25 ~~~~~g~~~~r~~l~~~~PDvvVi~~~DH~~~ 56 (269)
T PRK13358 25 LRVVSGMNEIGRRLRALRPDLLVIIGSDHLFN 56 (269)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf 89999999999999981999999985437876
No 224
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=61.35 E-value=12 Score=17.52 Aligned_cols=117 Identities=21% Similarity=0.202 Sum_probs=59.8
Q ss_pred CCCEEEEEECCCCHHHHHHHH-HHHHHHHCCCCEEEEEECCHHHHH-----CCCEEEECHHHCCEEEHHHHH------HH
Q ss_conf 874599997682147899999-999997389983999971789994-----788065044453110136746------64
Q gi|254780767|r 2 NSLKIAVIAGEISGDLLAGDL-IKSLKEMVSYPINLVGVGGPSLQK-----EGLVSLFDFSELSVIGIMQVV------RH 69 (383)
Q Consensus 2 ~~mki~i~aGE~SGD~~~a~l-i~~Lk~~~~~~~~~~giGG~~m~~-----~G~~~~~~~~~l~v~G~~evl------~~ 69 (383)
++ ||.|..||++|= |-.+ ++++++. .......-+|..++-+ .+.+...++....+....++- .+
T Consensus 1 Kp-~IaIT~GDPaGI--GPEIilKa~~~~-~~~~~pii~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 76 (304)
T PRK03946 1 KK-KIAISIGDINGI--GLEIALKSHEEV-SKICEPLYFIDEELLNQASQLLNLKIPNDFEIDEPGLLFEIKPGKVSAKS 76 (304)
T ss_pred CC-CEEEECCCCCHH--HHHHHHHHHHHH-HHHCCEEEEECHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCHHH
T ss_conf 99-189948886343--999999982876-86299199988999999999849999644213256644568899828899
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEE------------ECHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 5999999999986100128886898------------51177657999986630134631111002211
Q gi|254780767|r 70 LPQFIFRINQTVELIVSSKPDVLLI------------VDNPDFTHRVAKRVRKKMPNLPIINYVCPSVW 126 (383)
Q Consensus 70 ~~~~~~~~~~~~~~i~~~~Pd~vi~------------iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvW 126 (383)
=...++.++...+.+++.+.|++|+ ..|||..--||+...+. ++.-++++..|
T Consensus 77 g~~~~~~l~~Ai~~~~~g~~~aiVT~PInK~~i~~aG~~f~GHTE~La~~~~~~----~~Mml~~~~L~ 141 (304)
T PRK03946 77 GAYSFESFKKAVELADSKEVDAICTLPIHKKAWQKAGIPYVGHTDALRDRFKKN----AIMMLGCEKLF 141 (304)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHHCC----CEEEECCCCEE
T ss_conf 999999999999999839987999675469999858999898169999986024----32311168638
No 225
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=61.27 E-value=12 Score=17.51 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=15.3
Q ss_pred CCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECC
Q ss_conf 874301230511189998764027351262016
Q gi|254780767|r 201 SRAQEIYKILPFFESAVASLVKRNPFFRFSLVT 233 (383)
Q Consensus 201 SR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~ 233 (383)
||....+.|.++|.+.++.+.+..|+-.+++.+
T Consensus 83 tR~dLl~~N~~I~~~i~~~i~~~~p~~i~lvvs 115 (300)
T cd01339 83 SRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVT 115 (300)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 889999988999999999999659984899827
No 226
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=61.17 E-value=9.2 Score=18.39 Aligned_cols=37 Identities=24% Similarity=0.520 Sum_probs=25.3
Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 8610012888689851177657999986630134631111
Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~y 120 (383)
.+.|.+-+||+||+-+.. -+-.+...+.+. |||++++
T Consensus 62 ~E~ilaL~PDlVi~~~~~-~~~~~~~~L~~~--gI~v~~~ 98 (186)
T cd01141 62 VELIVALKPDLVILYGGF-QAQTILDKLEQL--GIPVLYV 98 (186)
T ss_pred HHHHHHHCCCEEEEECCC-CCHHHHHHHHHC--CCCEEEE
T ss_conf 999997099999995887-867899999964--9957996
No 227
>PRK09581 pleD response regulator PleD; Reviewed
Probab=61.13 E-value=10 Score=18.13 Aligned_cols=39 Identities=23% Similarity=0.584 Sum_probs=21.3
Q ss_pred HHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHH--CCCCCCEEE
Q ss_conf 6100128886898-5117765-7999986630--134631111
Q gi|254780767|r 82 ELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKK--MPNLPIINY 120 (383)
Q Consensus 82 ~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~--~~~ipvi~y 120 (383)
+.+.+.+||+|++ +-=||.+ +.+++.+|.. ..+||+|..
T Consensus 40 ~~~~~~~PDLILlDi~MP~mdG~ev~r~Lk~~~~~~~iPVIvl 82 (457)
T PRK09581 40 EICEREQPDIILLDVMMPGMDGFEVCRRLKSDPATAHIPVVMV 82 (457)
T ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 9997189998999287799999999999965988899849999
No 228
>KOG0680 consensus
Probab=60.64 E-value=12 Score=17.61 Aligned_cols=55 Identities=16% Similarity=-0.001 Sum_probs=23.6
Q ss_pred EEEECCCCCCEEEE---EE--CCCCCC-EEEEHHHCCCCCCCHHHC--------CCCCHHHHHHHHHHH
Q ss_conf 02540577410000---10--246761-023024407842612420--------548989999999998
Q gi|254780767|r 289 VVSIYKSEWIVNFF---IF--YIKTWT-CALPNLIVDYPLVPEYFN--------SMIRSEALVRWIERL 343 (383)
Q Consensus 289 ~IV~Yk~~~lt~~i---~~--lik~~~-i~LpNii~~~~ivPEliQ--------~~~~~~~i~~~~~~l 343 (383)
..+.|-+.=.+.-. .+ -+|.+. --+.++-..+-.+||++. .-=-|+.++..+..+
T Consensus 241 ~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~ 309 (400)
T KOG0680 241 VMIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSML 309 (400)
T ss_pred EEEEEECCCCCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCHHHCCHHHCCCCCCCCHHHHHHHHHHC
T ss_conf 578986477532231267558889987765146103211162330696443856479169999999869
No 229
>PRK06223 malate dehydrogenase; Reviewed
Probab=60.03 E-value=13 Score=17.37 Aligned_cols=60 Identities=18% Similarity=0.073 Sum_probs=25.7
Q ss_pred HHHHCCCHHHHHHHHHHCCCEEEECCCCCCEEEEE--ECCCCCCEEEEHHHCCCCCCCHHHCCCCCHH
Q ss_conf 35523311566888762753025405774100001--0246761023024407842612420548989
Q gi|254780767|r 269 NAAMAASGTVILELALCGIPVVSIYKSEWIVNFFI--FYIKTWTCALPNLIVDYPLVPEYFNSMIRSE 334 (383)
Q Consensus 269 d~ai~~SGTaTLE~al~g~P~IV~Yk~~~lt~~i~--~lik~~~i~LpNii~~~~ivPEliQ~~~~~~ 334 (383)
..+++.+..--.++.+.+.-.|+- .+.++- .-+.--|+|+|=+|-.+.+ .+.+.-..+++
T Consensus 227 ~~~ia~a~~~iv~aIl~d~~~i~~-----~s~~l~g~yg~~~v~~s~P~~ig~~Gi-~~i~~l~L~~~ 288 (312)
T PRK06223 227 YYAPAASIVEMVEAILKDKKRVLP-----CSAYLEGEYGIKDVYVGVPVKIGKNGV-EKVIEIELTED 288 (312)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEE-----EEEEECCCCCCCCEEEEEEEEECCCCE-EEECCCCCCHH
T ss_conf 478999999999998678997067-----899852666876679997899869955-99838999999
No 230
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=59.92 E-value=13 Score=17.36 Aligned_cols=166 Identities=16% Similarity=0.164 Sum_probs=75.7
Q ss_pred HHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHH---H
Q ss_conf 9998610012888689851177657999986630134631111002211003663557999998640156774223---2
Q gi|254780767|r 78 NQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEV---M 154 (383)
Q Consensus 78 ~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~---f 154 (383)
..+.+.+...+||+++.+-.|- +..+++...+||+++-.. .| |-+..+ +
T Consensus 50 ~~ia~~l~~~~~DlIva~gTpa-----aqa~~~~~~~iPIVF~~V-----------------~d------Pv~aglv~s~ 101 (281)
T cd06325 50 PTIARKFVADKPDLIVAIATPA-----AQAAANATKDIPIVFTAV-----------------TD------PVGAGLVKSL 101 (281)
T ss_pred HHHHHHHHHCCCCEEEECCHHH-----HHHHHHCCCCCCEEEEEC-----------------CC------HHHCCCCCCC
T ss_conf 9999999854999999877099-----999996279999899951-----------------68------6662754356
Q ss_pred HCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 00255314763882112210013558889761876556505998538743012305111899987640273512620166
Q gi|254780767|r 155 QRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTV 234 (383)
Q Consensus 155 ~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~ 234 (383)
++ +|-+++=|-++. + ....-+..+ .+.++-+.|+++=-+... .. -..++.++...++. ++.++....
T Consensus 102 ~~-pg~NvTGvs~~~----~-~~~~l~l~~--~l~P~~k~igvlyn~~e~--ns--~~~~~~~~~~a~~~-Gi~v~~~~v 168 (281)
T cd06325 102 EK-PGGNVTGVSDLV----P-VETQLELLK--KLLPDAKTVGVLYNPSEA--NS--VVQVKELKKAAAKL-GIEVVEATV 168 (281)
T ss_pred CC-CCCCEEEEECCC----C-HHHHHHHHH--HHCCCCCEEEEEECCCCC--CH--HHHHHHHHHHHHHC-CCEEEEEEC
T ss_conf 78-999579987874----7-899999999--858898589999579986--56--99999999999976-988999945
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEC
Q ss_conf 33688999999604888505520552035788763552331156688876275302540
Q gi|254780767|r 235 SSQENLVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAASGTVILELALCGIPVVSIY 293 (383)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~Y 293 (383)
.+..+. ...........+.+....+. .+.+ .-.+.+-.+.-.++|.+..+
T Consensus 169 ~~~~ei-~~a~~~l~~~~Dal~~~~d~-~v~s-------~~~~i~~~a~~~~iPv~~~~ 218 (281)
T cd06325 169 SSSNDV-QQAAQSLAGKVDAIYVPTDN-TVAS-------AMEAVVKVANEAKIPVIASD 218 (281)
T ss_pred CCHHHH-HHHHHHHHHCCCEEEEECCC-HHHH-------HHHHHHHHHHHCCCCEEECC
T ss_conf 988899-99999756258999991881-2777-------99999999987499889367
No 231
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=59.69 E-value=3.9 Score=20.83 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=41.7
Q ss_pred HHHHHCCCEEEECCCCCCEEE----EEECCCCCCEEEEHHH---CCCCCCCHHHCCCC-----CHHHHHHHHHHHHCCHH
Q ss_conf 887627530254057741000----0102467610230244---07842612420548-----98999999999844989
Q gi|254780767|r 281 ELALCGIPVVSIYKSEWIVNF----FIFYIKTWTCALPNLI---VDYPLVPEYFNSMI-----RSEALVRWIERLSQDTL 348 (383)
Q Consensus 281 E~al~g~P~IV~Yk~~~lt~~----i~~lik~~~i~LpNii---~~~~ivPEliQ~~~-----~~~~i~~~~~~ll~d~~ 348 (383)
++.-.|+|.|+++ |+|-|.- ++.+=.+ -++-|+-+ +|++|+.+-+..+. +++.+.+. -+++.--
T Consensus 192 ~l~~~~lpyI~vl-t~PttGGvtASfa~lgDi-iiaEp~A~IgFAG~RVIeqti~~~LP~~FQtae~ll~~--G~iD~iv 267 (288)
T PRK05654 192 RLSEAGLPYISVL-TDPTTGGVSASFAMLGDI-IIAEPKALIGFAGPRVIEQTVREKLPEGFQRAEFLLEH--GAIDMIV 267 (288)
T ss_pred HHHHCCCCEEEEE-CCCCCCCEEEEECCCCCE-EEEECCCEEEECCCHHHHHHCCCCCCCCHHHHHHHHHC--CCCCEEE
T ss_conf 9997699689996-689858944430247877-99805845873153899985089899740118999977--9963664
Q ss_pred HHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999838
Q gi|254780767|r 349 QRRAMLHGFENLWDRMN 365 (383)
Q Consensus 349 ~r~~~~~~~~~~~~~Lg 365 (383)
.|+++.+.+..+...+.
T Consensus 268 ~R~~lk~~l~~ll~~~~ 284 (288)
T PRK05654 268 HRRELRDTLASLLALHT 284 (288)
T ss_pred CHHHHHHHHHHHHHHHH
T ss_conf 58999999999999983
No 232
>TIGR02918 TIGR02918 conserved hypothetical protein TIGR02918; InterPro: IPR014267 Members of this entry are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus..
Probab=58.36 E-value=11 Score=18.00 Aligned_cols=145 Identities=16% Similarity=0.176 Sum_probs=99.8
Q ss_pred CCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEE-ECCCCHHHHHHH
Q ss_conf 5565059985387430123051118999876402735126201663368899999960488850552-055203578876
Q gi|254780767|r 190 SQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEIII-DKEQKKQVFMTC 268 (383)
Q Consensus 190 ~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~l~~s 268 (383)
..++.-.|+--||-.. .+|..=+++|+-+-.+.-|++.|-|=...+.+..++.++.+...+-=|.+ ...+..++++.=
T Consensus 325 ~~Rkp~SiiTASRLA~-EKHiDWLV~AVv~Ak~~~P~l~FDIYG~GgE~~~L~~iI~~n~A~DYI~LkGH~~L~~vY~~Y 403 (511)
T TIGR02918 325 QERKPFSIITASRLAK-EKHIDWLVKAVVKAKKSVPELTFDIYGEGGEKSKLKKIINENQAEDYIRLKGHKNLSEVYKDY 403 (511)
T ss_pred CCCCCHHHHHHHHHCC-CCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHCCC
T ss_conf 4645215677734137-671268889999951338851100035637889999987631200124311543356662323
Q ss_pred HHHHCCC-----HHHHHHHHHHCCCEEEECCCCCCE-EEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCC---HHHHHHH
Q ss_conf 3552331-----156688876275302540577410-000102467610230244078426124205489---8999999
Q gi|254780767|r 269 NAAMAAS-----GTVILELALCGIPVVSIYKSEWIV-NFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIR---SEALVRW 339 (383)
Q Consensus 269 d~ai~~S-----GTaTLE~al~g~P~IV~Yk~~~lt-~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~---~~~i~~~ 339 (383)
.+=|++| |=.=|||---|.||| ..-++.=+ .||+.- .|--.+|+=...+-+ .+.+|+.
T Consensus 404 elyLsaStSEGFGLTLmEAvGSGLgmI-GFDV~YGN~TFI~d~------------~NGYLIP~~~~~~~~~~I~~~lA~~ 470 (511)
T TIGR02918 404 ELYLSASTSEGFGLTLMEAVGSGLGMI-GFDVNYGNPTFIKDN------------KNGYLIPIDEEEDDEDEIITALAEK 470 (511)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCCCCCEEECC------------CCCEECCCCCCCCCHHHHHHHHHHH
T ss_conf 223452121441157999975043323-661874388702408------------8840433457878878999999999
Q ss_pred HHHHH-CCHH
Q ss_conf 99984-4989
Q gi|254780767|r 340 IERLS-QDTL 348 (383)
Q Consensus 340 ~~~ll-~d~~ 348 (383)
+..+. ++.+
T Consensus 471 Iv~~Fv~~~~ 480 (511)
T TIGR02918 471 IVEYFVNEND 480 (511)
T ss_pred HHHHHCCCCC
T ss_conf 8986126786
No 233
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=58.18 E-value=5.7 Score=19.73 Aligned_cols=39 Identities=18% Similarity=0.478 Sum_probs=25.0
Q ss_pred HHHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE
Q ss_conf 86100128886898-5117765-7999986630134631111
Q gi|254780767|r 81 VELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 81 ~~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383)
.+.+..++||++|+ +.-|+-| +.+.+.+|+. .++|+|..
T Consensus 47 l~~~~~~~~DliilDi~lp~~~Gl~l~~~lr~~-~~~piI~l 87 (240)
T PRK10710 47 LPYVRQTPPDLILLDLMLPGTDGLTLCREIRRF-SDIPIVMV 87 (240)
T ss_pred HHHHHHCCCCEEEECCCCCCCCCCCCHHHHHCC-CCCCEEEE
T ss_conf 999973799899987999888776321122115-76468998
No 234
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=57.84 E-value=11 Score=17.79 Aligned_cols=61 Identities=25% Similarity=0.406 Sum_probs=33.2
Q ss_pred EEEEE-ECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC-CHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf 59999-7682147899999999997389983999971-789994788065044453110136746645999999999986
Q gi|254780767|r 5 KIAVI-AGEISGDLLAGDLIKSLKEMVSYPINLVGVG-GPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVE 82 (383)
Q Consensus 5 ki~i~-aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG-G~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~ 82 (383)
||-|+ +|--.--...-.+..+.-. ..|++.+-+| |.+|+.+-.+ +..+
T Consensus 4 kiGiiKlGNIg~s~~idl~LDErAd--RedI~vrv~gsGaKm~pe~~~----------------------------~v~~ 53 (276)
T PRK00994 4 KIGIIKLGNIGMSPVIDLLLDERAD--REDIDVRVVGSGAKMGPEEVE----------------------------RVVK 53 (276)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHC--CCCCEEEEECCCCCCCHHHHH----------------------------HHHH
T ss_conf 9988974452059999998765413--468549995266777978999----------------------------9999
Q ss_pred HCCCCCCCEEEEE
Q ss_conf 1001288868985
Q gi|254780767|r 83 LIVSSKPDVLLIV 95 (383)
Q Consensus 83 ~i~~~~Pd~vi~i 95 (383)
.+++++||.+|.|
T Consensus 54 ~~~~~~pDf~i~i 66 (276)
T PRK00994 54 KMKEWKPDFIIVI 66 (276)
T ss_pred HHHHHCCCEEEEE
T ss_conf 9884089989997
No 235
>pfam01761 DHQ_synthase 3-dehydroquinate synthase. The 3-dehydroquinate synthase EC:4.6.1.3 domain is present in isolation in various bacterial 3-dehydroquinate synthases and also present as a domain in the pentafunctional AROM polypeptide. 3-dehydroquinate (DHQ) synthase catalyses the formation of dehydroquinate (DHQ) and orthophosphate from 3-deoxy-D-arabino heptulosonic 7 phosphate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids.
Probab=57.83 E-value=14 Score=17.13 Aligned_cols=87 Identities=18% Similarity=0.297 Sum_probs=54.9
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45999976821478999999999973899839999717899947880650444531101367466459999999999861
Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVEL 83 (383)
Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~ 83 (383)
-|+++++++.--++++.++.+.|++. +.++..+-+-+. |..+.+..+.+..+++.+.
T Consensus 20 ~~~~iv~D~~v~~~~~~~i~~~L~~~-~~~~~~~~~~~g----------------------E~~k~~~~~~~i~~~l~~~ 76 (310)
T pfam01761 20 RRLVVVTDENVAKLYGEKLEELLKAA-GFEVEVVVIPDG----------------------ETYKTLETVARIYDALLEK 76 (310)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHC-CCCEEEEEECCC----------------------CCCCCHHHHHHHHHHHHHC
T ss_conf 82999989767999999999999877-995799995698----------------------6548999999999999974
Q ss_pred CCCCCCCEEEEE------CHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 001288868985------1177657999986630134631111
Q gi|254780767|r 84 IVSSKPDVLLIV------DNPDFTHRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 84 i~~~~Pd~vi~i------D~pgFnl~lak~lkk~~~~ipvi~y 120 (383)
.-.++|++|.| |--+| .|.-.+ + |+|+++.
T Consensus 77 -~~~r~d~iiaiGGG~v~D~ak~---~A~~~~-r--g~~~i~i 112 (310)
T pfam01761 77 -GLTRSDVIIALGGGVIGDLAGF---AAATYM-R--GIPFIQV 112 (310)
T ss_pred -CCCCCCEEEEECCCCHHHHHHH---HHHHHH-C--CCCEEEE
T ss_conf -9997754999549621168999---999997-6--9977986
No 236
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=57.08 E-value=13 Score=17.31 Aligned_cols=78 Identities=9% Similarity=0.169 Sum_probs=46.9
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45999976821478999999999973899839999717899947880650444531101367466459999999999861
Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVEL 83 (383)
Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~ 83 (383)
|||+|+--|+ ..+.+.+..-++.+ ++++.|..+...++ .+.
T Consensus 2 irVLIVEDD~----~v~~~~~~~l~~~~-gf~vv~~a~t~~eA----------------------------------~~~ 42 (239)
T PRK10430 2 INVLIVDDDA----MVAELNRRYVAQIP-GFQCCGTASTLEKA----------------------------------KEI 42 (239)
T ss_pred CEEEEEECCH----HHHHHHHHHHHHCC-CCEEEEEECCHHHH----------------------------------HHH
T ss_conf 8799992989----99999999985189-90899998999999----------------------------------999
Q ss_pred C--CCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE
Q ss_conf 0--0128886898-5117765-7999986630134631111
Q gi|254780767|r 84 I--VSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 84 i--~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383)
+ .+.+||++++ |--||.| +-+.+.+|+.++++|||-.
T Consensus 43 l~~~~~~~DLILLDi~mPd~~Glell~~lR~~~~~~~VI~I 83 (239)
T PRK10430 43 IFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDVIVI 83 (239)
T ss_pred HHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 96579998589978999999789999999985899819999
No 237
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=56.79 E-value=9.3 Score=18.35 Aligned_cols=79 Identities=15% Similarity=0.234 Sum_probs=50.8
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHH
Q ss_conf 98745999976821478999999999973899839999717899947880650444531101367466459999999999
Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQT 80 (383)
Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~ 80 (383)
|+. ||+++--++ ..+..|...|+.. ++++.+..... +.
T Consensus 1 M~~-kILlVEDD~---~l~~~l~~~L~~~---g~~V~~~~~~~-----------------------------------~a 38 (224)
T PRK10766 1 MSY-HILVVEDEP---VTRARLQGYFEQE---GYRVSEAASGA-----------------------------------GM 38 (224)
T ss_pred CCC-EEEEECCCH---HHHHHHHHHHHHC---CCEEEEECCHH-----------------------------------HH
T ss_conf 997-199991999---9999999999987---99999989999-----------------------------------99
Q ss_pred HHHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEEC
Q ss_conf 86100128886898-5117765-799998663013463111100
Q gi|254780767|r 81 VELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYVC 122 (383)
Q Consensus 81 ~~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv~ 122 (383)
.+.+.+++||++|+ +.-|+.| +.+++.+|+. .++|+|..-+
T Consensus 39 ~~~l~~~~~DlvilDi~lp~~~G~el~~~iR~~-~~~piI~lta 81 (224)
T PRK10766 39 REIMQNQHVDLILLDINLPGEDGLMLTRELRSR-STVGIILVTG 81 (224)
T ss_pred HHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHC-CCCCEEEECC
T ss_conf 999960899999988999988766137676304-7855686335
No 238
>cd01148 TroA_a Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=56.62 E-value=15 Score=17.00 Aligned_cols=67 Identities=10% Similarity=0.074 Sum_probs=36.0
Q ss_pred HHHCCCCCCCEEEEECHHHHHH---HHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 8610012888689851177657---99998663013463111100221100366355799999864015677
Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTH---RVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPF 149 (383)
Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl---~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpF 149 (383)
.+.+..-+||+||.-.+.+... ...+.+++. |||++-.-....|.........+.+.+..+--+|--
T Consensus 72 ~E~il~l~PDlIi~~~~~~~~~~~~~~~~~l~~~--gipv~~~~~~~~~~~~~~~~~~~~~~i~~lg~~~g~ 141 (284)
T cd01148 72 KETVLAARPDLVFGGWSYGFDKGGLGTPDSLAEL--GIKTYILPESCGQRRGEATLDDVYNDIRNLGKIFDV 141 (284)
T ss_pred HHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHC--CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9999736998898345434453203339999865--996899244223567777899999999999999797
No 239
>PRK05920 aromatic acid decarboxylase; Validated
Probab=56.39 E-value=15 Score=16.98 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=29.1
Q ss_pred CCCCE-EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 98745-99997682147899999999997389983999971
Q gi|254780767|r 1 MNSLK-IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG 40 (383)
Q Consensus 1 m~~mk-i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG 40 (383)
|+.|| |.+--..+||-.||-+++++|++. +++.+-+-
T Consensus 1 m~~mkrivvgITGASG~~ya~rll~~L~~~---~~ev~lvi 38 (205)
T PRK05920 1 MSKMKRIVLAITGASGAIYGVRLLECLLAA---DYEVHLVI 38 (205)
T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHHHHC---CCEEEEEE
T ss_conf 998875999986542799999999999867---99899998
No 240
>pfam04396 consensus
Probab=56.19 E-value=15 Score=16.96 Aligned_cols=113 Identities=17% Similarity=0.270 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHHH-CCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHH--HH--HHHHHHHHHHHHHHHHHCCCC
Q ss_conf 21478999999999973-89983999971789994788065044453110136--74--664599999999998610012
Q gi|254780767|r 13 ISGDLLAGDLIKSLKEM-VSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIM--QV--VRHLPQFIFRINQTVELIVSS 87 (383)
Q Consensus 13 ~SGD~~~a~li~~Lk~~-~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~--ev--l~~~~~~~~~~~~~~~~i~~~ 87 (383)
.++-..+.++-++|++. +...+.+...|.-... ..--.++++..|+. .+ -.+-..-.+.+-.+..+..++
T Consensus 18 ~~~~~V~~~I~~al~~~Gy~g~vsi~aygd~~~~-----~~~~~~~L~stGI~l~hvp~g~k~aad~~m~~d~~~~a~~n 92 (149)
T pfam04396 18 LDARDVAPNIKSALRKLGYRGPVSITAYGDLNKI-----PREILRALSSTGISLAHVPAGAKDARDKKMLVDILLWALDN 92 (149)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCC-----CHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 8999999999999997499986699998746869-----88999999976986885788775347889999999999709
Q ss_pred CC-CEEEEECH--HHHHHHHHHHHHHHCCCCCCEE----------EECCCCCCCCC
Q ss_conf 88-86898511--7765799998663013463111----------10022110036
Q gi|254780767|r 88 KP-DVLLIVDN--PDFTHRVAKRVRKKMPNLPIIN----------YVCPSVWAWRE 130 (383)
Q Consensus 88 ~P-d~vi~iD~--pgFnl~lak~lkk~~~~ipvi~----------yv~PqvWAWr~ 130 (383)
.| .-+++|.- -+|.-.+++..+.++++|=+.| --++++|-|+.
T Consensus 93 p~Pati~LISgd~~dfa~~l~~L~~~r~Y~vlLa~p~~a~~~~l~~a~~~~w~w~~ 148 (149)
T pfam04396 93 PPPANLMLISGDDRDFASALHDLLRKRGYNILLAQPEKASSSPALLAAASEWLWDS 148 (149)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCEECCCC
T ss_conf 99707999957707679999999871285599974897878999987630417767
No 241
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase; InterPro: IPR011304 This entry represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme functions as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities.; GO: 0004459 L-lactate dehydrogenase activity, 0019642 anaerobic glycolysis, 0005737 cytoplasm.
Probab=56.07 E-value=15 Score=16.97 Aligned_cols=59 Identities=15% Similarity=0.072 Sum_probs=42.0
Q ss_pred CCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 874301230511189998764027351262016633688999999604888505520552
Q gi|254780767|r 201 SRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEIIIDKEQ 260 (383)
Q Consensus 201 SR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 260 (383)
||-+++.+|.-+|-+.+..+.+..||--|++++- ..+=+-+...+-.+.+.+-++..+-
T Consensus 82 tRL~Lv~~N~~I~K~Iv~~v~k~gf~gI~lvatN-PVDIlTy~~~klSGfP~~rVIGSGT 140 (302)
T TIGR01771 82 TRLELVDRNVKIMKSIVPEVVKSGFDGIFLVATN-PVDILTYVAWKLSGFPKNRVIGSGT 140 (302)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC-CCHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 8799999889999998546541389847999866-3158999999874787200775066
No 242
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=55.53 E-value=16 Score=16.89 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=30.5
Q ss_pred HHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 999998610012888689851177657999986630134631111
Q gi|254780767|r 76 RINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 76 ~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~y 120 (383)
......+.+.+.+.+++|+-.+.+-.+.++..+.+. ++|++..
T Consensus 54 a~~~a~~li~~~~V~~ivG~~~S~~~~a~~~~~~~~--~vp~is~ 96 (312)
T cd06333 54 AVTNARKLIEEDKVDAIIGPSTTPATMAVAPVAEEA--KTPMISL 96 (312)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHC--CCEEEEC
T ss_conf 999999986517933986687737788889999974--9869974
No 243
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=55.49 E-value=13 Score=17.41 Aligned_cols=31 Identities=6% Similarity=0.135 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECHHHHH
Q ss_conf 9999999999861001288868985117765
Q gi|254780767|r 71 PQFIFRINQTVELIVSSKPDVLLIVDNPDFT 101 (383)
Q Consensus 71 ~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFn 101 (383)
..+.+.+.++.+++++.+||++|.|-...||
T Consensus 29 ~~v~~a~~~~r~~l~~~~PDvvVii~~DH~~ 59 (277)
T cd07368 29 EICWHAYAICAERLAALQVTSVVVIGDDHYT 59 (277)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCHH
T ss_conf 8999999999999997599989998687244
No 244
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=55.44 E-value=16 Score=16.88 Aligned_cols=39 Identities=21% Similarity=0.440 Sum_probs=28.4
Q ss_pred CCCCEEEEEECCCCHHHH-----HHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 987459999768214789-----9999999997389983999971
Q gi|254780767|r 1 MNSLKIAVIAGEISGDLL-----AGDLIKSLKEMVSYPINLVGVG 40 (383)
Q Consensus 1 m~~mki~i~aGE~SGD~~-----~a~li~~Lk~~~~~~~~~~giG 40 (383)
|++|||.|++|..|...- |..+.++|++. +.++...++.
T Consensus 1 M~k~kI~Vl~GG~S~EreVSl~Sg~~v~~~L~~~-~y~v~~i~i~ 44 (344)
T PRK01966 1 MMKIRVALLFGGRSAEHEVSLVSAKNILKALDKD-KFEVIPIGID 44 (344)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH-CCEEEEEEEC
T ss_conf 9976899995878821899999999999976150-8859999983
No 245
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G; InterPro: IPR010228 This entry represents the G subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain related subunits from formate dehydrogenase complexes.; GO: 0016651 oxidoreductase activity acting on NADH or NADPH, 0051536 iron-sulfur cluster binding.
Probab=55.27 E-value=16 Score=16.86 Aligned_cols=46 Identities=24% Similarity=0.429 Sum_probs=33.3
Q ss_pred HHHHHCCCCCCCEEEEE------CHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC
Q ss_conf 99861001288868985------117765799998663013463111100221100
Q gi|254780767|r 79 QTVELIVSSKPDVLLIV------DNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAW 128 (383)
Q Consensus 79 ~~~~~i~~~~Pd~vi~i------D~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAW 128 (383)
.....| ++.|+|++| +.|-+|+||=|.+|+. +--.+.++.|+-|--
T Consensus 390 ~tl~~~--e~~D~~ll~G~d~r~e~P~l~lrlR~~~~k~--~~~~~~~~g~~~~~~ 441 (715)
T TIGR01973 390 TTLAEI--EEADLVLLVGADLRQEAPLLNLRLRKAVKKG--GQAKVALIGIEKWDL 441 (715)
T ss_pred CCHHHH--CCCCEEEEECCCCCHHHHHHHHHHHHHHHCC--CCEEEEECCCCCCCC
T ss_conf 755543--1278689975886402789999999897638--821899728676564
No 246
>KOG4626 consensus
Probab=55.16 E-value=16 Score=16.85 Aligned_cols=160 Identities=19% Similarity=0.214 Sum_probs=83.8
Q ss_pred HHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCH-HHHHHHHHHHCCCCCEEEEECC--
Q ss_conf 9761876556505998538743012305111899987640273512620166336-8899999960488850552055--
Q gi|254780767|r 183 NKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQ-ENLVRCIVSKWDISPEIIIDKE-- 259 (383)
Q Consensus 183 ~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~i~~~~~-- 259 (383)
+.+.+++++.-+. ||=.+ +-+.-|-.+++--.+.++-|+-..++-.-|.. +..++......+++++-++...
T Consensus 750 r~~y~Lp~d~vvf----~~FNq-LyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va 824 (966)
T KOG4626 750 RSQYGLPEDAVVF----CNFNQ-LYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVA 824 (966)
T ss_pred CCCCCCCCCEEEE----EECHH-HHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEECCCC
T ss_conf 7777899870798----53044-542898999999999985886416877245335088999999819994525403431
Q ss_pred CCHHHH---HHHHHHHC---CCH-HHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCC
Q ss_conf 203578---87635523---311-56688876275302540577410000102467610230244078426124205489
Q gi|254780767|r 260 QKKQVF---MTCNAAMA---ASG-TVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIR 332 (383)
Q Consensus 260 ~~~~~l---~~sd~ai~---~SG-TaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~ 332 (383)
-+.+-+ +-+|+++- |.| |.+.+.--.|+|||..---..-+..-.-+ .--.|++-+|++.+
T Consensus 825 ~k~eHvrr~~LaDv~LDTplcnGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sl--l~~~Gl~hliak~~----------- 891 (966)
T KOG4626 825 AKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGVPMVTMPGETLASRVAASL--LTALGLGHLIAKNR----------- 891 (966)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCEEECCCHHHHHHHHHHH--HHHCCCHHHHHHHH-----------
T ss_conf 04888876556652015767588665523310377426335088898989999--99816288875128-----------
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 89999999998449899999999999999
Q gi|254780767|r 333 SEALVRWIERLSQDTLQRRAMLHGFENLW 361 (383)
Q Consensus 333 ~~~i~~~~~~ll~d~~~r~~~~~~~~~~~ 361 (383)
++-.+-..++-.|.++.++++.++...+
T Consensus 892 -eEY~~iaV~Latd~~~L~~lr~~l~~~r 919 (966)
T KOG4626 892 -EEYVQIAVRLATDKEYLKKLRAKLRKAR 919 (966)
T ss_pred -HHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf -9999999986057799999999999985
No 247
>TIGR01212 TIGR01212 radical SAM protein, TIGR01212 family; InterPro: IPR005911 This uncharacterised protein family shows significant similarity to IPR005910 from INTERPRO, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain..
Probab=55.10 E-value=12 Score=17.54 Aligned_cols=108 Identities=17% Similarity=0.271 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCC------CCEEEECCCCCCCCCCCHHHHH
Q ss_conf 6746645999999999986100128886898511776579999866301346------3111100221100366355799
Q gi|254780767|r 64 MQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNL------PIINYVCPSVWAWREGRARKMC 137 (383)
Q Consensus 64 ~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~i------pvi~yv~PqvWAWr~~R~k~~~ 137 (383)
+|+|+.....--..+.++..-...+||+| |+=-|-|-...+++++.| -+.|+=.= =+=+|.+.++
T Consensus 95 ve~Lk~~y~~aL~~~~vVGlsvgTRPDC~-----P~~VLDlL~ey~~~GyevWvELGLQtah~~TL----~~INRgHd~~ 165 (307)
T TIGR01212 95 VEVLKEMYEQALSEDDVVGLSVGTRPDCV-----PDEVLDLLAEYKERGYEVWVELGLQTAHDRTL----KKINRGHDFA 165 (307)
T ss_pred HHHHHHHHHHHHHHCCEEEEEECCCCCCC-----HHHHHHHHHHHHHCCEEEEEECCCCCHHHHHH----HHHCCCCCHH
T ss_conf 68888999987632780577536889877-----47899999999549758999605356558999----9851437878
Q ss_pred HHHHHHCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHH
Q ss_conf 99986401567742232002553147638821122100135588897618765565059985387430123051118999
Q gi|254780767|r 138 AYINQVISILPFEKEVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAV 217 (383)
Q Consensus 138 ~~~d~~~~ifpFE~~~f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~ 217 (383)
.|+|.+.-. ++ .|+++. +|= |.=|||--+. -|++||
T Consensus 166 ~y~~a~~~~--------~k-rGikVC--~H~--------------------------I~GLPgE~~~-------~~~eTa 201 (307)
T TIGR01212 166 CYVDAVKRA--------RK-RGIKVC--SHV--------------------------ILGLPGEDRE-------EMLETA 201 (307)
T ss_pred HHHHHHHHH--------HH-CCCEEE--EEE--------------------------EECCCCCCHH-------HHHHHH
T ss_conf 999999999--------76-598899--998--------------------------7428988888-------999999
Q ss_pred HHHHHCC
Q ss_conf 8764027
Q gi|254780767|r 218 ASLVKRN 224 (383)
Q Consensus 218 ~~l~~~~ 224 (383)
+.+.+-.
T Consensus 202 k~~~~l~ 208 (307)
T TIGR01212 202 KIVASLD 208 (307)
T ss_pred HHHHHCC
T ss_conf 9998379
No 248
>PRK13126 consensus
Probab=54.90 E-value=16 Score=16.82 Aligned_cols=119 Identities=13% Similarity=0.111 Sum_probs=70.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC---------CHHHHHCCCEEE---ECH--HHCCEEEHHHHHHHHH
Q ss_conf 99997682147899999999997389983999971---------789994788065---044--4531101367466459
Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG---------GPSLQKEGLVSL---FDF--SELSVIGIMQVVRHLP 71 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG---------G~~m~~~G~~~~---~~~--~~l~v~G~~evl~~~~ 71 (383)
.|+.||-++=|.-. .++++|.. . +.+.=+| ||--|++....+ ++. ..+=.||.+.++.
T Consensus 10 ~yitaG~P~~~~t~-~~l~~l~~--g--aDiiElGiPFSDP~ADGPvIQ~A~~~Al~~G~~~~~~pivlM~Y~N~~~--- 81 (237)
T PRK13126 10 VYLTAGWPSADTFL-EALAGLSG--L--VDFFELGIPTPNPKYDGPYIRLAHREAEEPGWDAPKAPTYLMAYWEDYA--- 81 (237)
T ss_pred EEEECCCCCHHHHH-HHHHHHHC--C--CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHH---
T ss_conf 88717179879999-99998554--8--9999989988887776899999999999859985687589997298776---
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECHH----HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 999999999861001288868985117----765799998663013463111100221100366355799999
Q gi|254780767|r 72 QFIFRINQTVELIVSSKPDVLLIVDNP----DFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYI 140 (383)
Q Consensus 72 ~~~~~~~~~~~~i~~~~Pd~vi~iD~p----gFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~ 140 (383)
....+..+.+++..-|.+|..|-| +---......++ .|+..|+.++|+- .+.|++.+.+..
T Consensus 82 ---~g~~~f~~~~~~aGvdGlIipDLP~e~~ee~~~~~~~~~~--~gl~~I~lv~ptt---~~~ri~~i~~~s 146 (237)
T PRK13126 82 ---GSPAELFETAAEVGARGVLAPDLLIDFPGDLERYLELSRE--YGLAPSFFIPSKF---PHRLLRRLASLE 146 (237)
T ss_pred ---HHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHH--CCCCEEEEECCCC---HHHHHHHHHHHC
T ss_conf ---5699999999874997388368887781778999999997--6997799738998---399999999858
No 249
>pfam02310 B12-binding B12 binding domain. This domain binds to B12 (adenosylcobamide), it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase.
Probab=54.89 E-value=16 Score=16.82 Aligned_cols=42 Identities=19% Similarity=0.412 Sum_probs=26.0
Q ss_pred HHHHHHCCCCCCCEEEE-E-CHHHH--HHHHHHHHHHHCCCCCCEE
Q ss_conf 99986100128886898-5-11776--5799998663013463111
Q gi|254780767|r 78 NQTVELIVSSKPDVLLI-V-DNPDF--THRVAKRVRKKMPNLPIIN 119 (383)
Q Consensus 78 ~~~~~~i~~~~Pd~vi~-i-D~pgF--nl~lak~lkk~~~~ipvi~ 119 (383)
.++.+.+++++||+|-+ + -...+ -.++++.+|+.+++++++-
T Consensus 41 ~~i~~~i~~~~pdiVgiS~~~~~~~~~~~~l~~~ik~~~p~~~iv~ 86 (121)
T pfam02310 41 EDIVEAIRAENPDVVGLSALMTTNLPAAKELARLLKRIRPGVKVVV 86 (121)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9999999980999999952321121136899999998598975998
No 250
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=54.81 E-value=16 Score=16.81 Aligned_cols=69 Identities=12% Similarity=0.131 Sum_probs=37.6
Q ss_pred HHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCC--CCCEE
Q ss_conf 2320025531476388211221001355888976187655650599853874301230511189998764027--35126
Q gi|254780767|r 152 EVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRN--PFFRF 229 (383)
Q Consensus 152 ~~f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~--~~~~~ 229 (383)
.+|+. .|.++.|.|--.- . +.-.+.-++ .++.+.-+-.| +...+|-|.++++.+.+.. +++.+
T Consensus 104 ~~l~~-~G~~V~~LG~~vp----~-e~~v~~~~~-----~~~divglS~~----~~~~~~~~~~~i~~lr~~~~~~~v~i 168 (201)
T cd02070 104 TMLEA-NGFEVIDLGRDVP----P-EEFVEAVKE-----HKPDILGLSAL----MTTTMGGMKEVIEALKEAGLRDKVKV 168 (201)
T ss_pred HHHHH-CCCEEEECCCCCC----H-HHHHHHHHH-----HCCCEEEEECC----CCCCHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 99987-8977997789999----7-999999997-----29899999625----66889999999999997289889859
Q ss_pred EECCCC
Q ss_conf 201663
Q gi|254780767|r 230 SLVTVS 235 (383)
Q Consensus 230 ~i~~~~ 235 (383)
.+-.++
T Consensus 169 ~vGG~a 174 (201)
T cd02070 169 MVGGAP 174 (201)
T ss_pred EEECCC
T ss_conf 998801
No 251
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB; InterPro: IPR011879 PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself . It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006817 phosphate transport.
Probab=54.01 E-value=12 Score=17.58 Aligned_cols=42 Identities=31% Similarity=0.561 Sum_probs=30.0
Q ss_pred HHHHHHHCCCCCCCEEEEEC--HHHHH-HHHHHHHHHHC--CCCCCEE
Q ss_conf 99998610012888689851--17765-79999866301--3463111
Q gi|254780767|r 77 INQTVELIVSSKPDVLLIVD--NPDFT-HRVAKRVRKKM--PNLPIIN 119 (383)
Q Consensus 77 ~~~~~~~i~~~~Pd~vi~iD--~pgFn-l~lak~lkk~~--~~ipvi~ 119 (383)
.+++...|+++.||+++| | =||-+ +.+|++||+.. -.||||-
T Consensus 35 ~~~A~~~~~E~~PDLILL-DWMLPG~SGIel~R~Lr~~~~Tr~iPIIM 81 (226)
T TIGR02154 35 GDEALTLINERLPDLILL-DWMLPGTSGIELARRLRREPETRAIPIIM 81 (226)
T ss_pred HHHHHHHHHCCCCCEEEE-CCCCCCCCHHHHHHHHCCCCCCCCCCEEE
T ss_conf 799999986079988996-14789975699998734763314888177
No 252
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=53.83 E-value=16 Score=16.71 Aligned_cols=43 Identities=12% Similarity=0.259 Sum_probs=30.6
Q ss_pred HHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 999998610012888689851177657999986630134631111
Q gi|254780767|r 76 RINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 76 ~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~y 120 (383)
...+..+.+...++|.+|+.-+.+-+....+.+++. ++|++.+
T Consensus 43 ~e~~~i~~l~~~~vDGiIi~~~~~~~~~~~~~l~~~--~iPvV~i 85 (268)
T cd06289 43 RQEQLLSTMLEHGVAGIILCPAAGTSPDLLKRLAES--GIPVVLV 85 (268)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHC--CCCEEEE
T ss_conf 999999999965999899946888999999999975--9989983
No 253
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=53.82 E-value=17 Score=16.71 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=26.7
Q ss_pred CCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCC
Q ss_conf 87430123051118999876402735126201663
Q gi|254780767|r 201 SRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVS 235 (383)
Q Consensus 201 SR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~ 235 (383)
||...+++|.+++.+.++.+.+..|+-.+++.+.|
T Consensus 87 ~R~dll~~N~~I~~~i~~~i~~~~p~a~iivvtNP 121 (263)
T cd00650 87 GRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNP 121 (263)
T ss_pred CHHHHHHCHHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 76566403288999998888732998369973894
No 254
>pfam01497 Peripla_BP_2 Periplasmic binding protein. This family includes bacterial periplasmic binding proteins. Several of which are involved in iron transport.
Probab=53.78 E-value=17 Score=16.70 Aligned_cols=83 Identities=16% Similarity=0.230 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHH
Q ss_conf 99999999973899839999717899947880650444531101367466459999999999861001288868985117
Q gi|254780767|r 19 AGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNP 98 (383)
Q Consensus 19 ~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~p 98 (383)
...++-+|- ..=++.|+++..-.... ..-.+..++.++|-..- --.+.+.+-+||+||.-.+.
T Consensus 8 ~teil~~LG----~~d~ivgv~~~~~~~~~-~~~~~~~~~~~vG~~~~------------~n~E~i~~l~PDlVi~~~~~ 70 (236)
T pfam01497 8 YTEILYALG----ATDKLVGVSAKTSDPLD-ARKKPAASIPLVGAYRE------------IDVEKLAALKPDLIIGSAGI 70 (236)
T ss_pred HHHHHHHCC----CCCEEEEEECCCCCCHH-HHHCCCCCCCCCCCCCC------------CCHHHHHHCCCCEEEEECCC
T ss_conf 999999859----99808999368788444-54210246663489999------------89999971599989972676
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 76579999866301346311110
Q gi|254780767|r 99 DFTHRVAKRVRKKMPNLPIINYV 121 (383)
Q Consensus 99 gFnl~lak~lkk~~~~ipvi~yv 121 (383)
+.+-...+.++ .++|++.+-
T Consensus 71 ~~~~~~~~~~~---~gipvv~~~ 90 (236)
T pfam01497 71 GLTDKAYELLS---LIIPTVIFE 90 (236)
T ss_pred CCHHHHHHHHH---CCCCEEEEC
T ss_conf 73689999995---799789942
No 255
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=53.02 E-value=5 Score=20.13 Aligned_cols=157 Identities=13% Similarity=0.096 Sum_probs=74.1
Q ss_pred CCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH
Q ss_conf 76556505998538743012305111899987640273512620166336889999996048885055205520357887
Q gi|254780767|r 188 TPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEIIIDKEQKKQVFMT 267 (383)
Q Consensus 188 ~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 267 (383)
++-+.. +..|-..|..+. -=+++++++.+++|+.+.++.+..+.+..+...+...+...-+ . .....+.+..
T Consensus 36 ~~~~~v-~~~LmDi~mP~~-----dGL~~~~~L~r~~P~vriLVLTm~d~e~~v~~aL~~aga~Gyl-~-K~~~~~eL~~ 107 (205)
T PRK11475 36 ISFSAV-IFSLSAMRSERR-----EGLSCLTELAIKFPRMRRLVIADDDIEARLIGSLSPSPLDGVL-S-KASTLEILQQ 107 (205)
T ss_pred CCCCCC-EEEEECCCCCCC-----CHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCEEE-E-CCCCHHHHHH
T ss_conf 886664-389853899997-----6699999999978997189997476879999999984166888-5-6788999999
Q ss_pred HHHHHCCCHHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCCCEEEEHHHCCC--CCCCHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 63552331156688876275302540577410000102467610230244078--4261242054898999999999844
Q gi|254780767|r 268 CNAAMAASGTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDY--PLVPEYFNSMIRSEALVRWIERLSQ 345 (383)
Q Consensus 268 sd~ai~~SGTaTLE~al~g~P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~--~ivPEliQ~~~~~~~i~~~~~~ll~ 345 (383)
+ +..+.+|.. |-.. +.....+..-...+..+ +|..-+-+ -.+...|+..+..=.
T Consensus 108 A-i~~~~~g~~--------------~~~~-------~~~~~~~~~~~~~Lt~rE~eVl~l~a~-G~s~~eIA~~L~~S~- 163 (205)
T PRK11475 108 E-LFLSLNGVR--------------QATD-------RLNNQWYINQSRMLSPTEREILRFMSR-GYSMPQIAEQLERNI- 163 (205)
T ss_pred H-HHHHHCCCH--------------HHCH-------HHHCCCCCCCCCCCCHHHHHHHHHHHC-CCCHHHHHHHHCCCH-
T ss_conf 9-999870611--------------3134-------665345677678898589999999976-999999999978888-
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHH
Q ss_conf 98999999999999999838999989-9999999986
Q gi|254780767|r 346 DTLQRRAMLHGFENLWDRMNTKKPAG-HMAAEIVLQV 381 (383)
Q Consensus 346 d~~~r~~~~~~~~~~~~~Lg~~~~a~-~~AA~~I~~~ 381 (383)
+....--.++..+||-...+. -.+|.+++.+
T Consensus 164 -----kTv~thr~~~m~KLgv~s~a~Li~~a~~~~~~ 195 (205)
T PRK11475 164 -----KTIRAHKFNVMSKLGVSSDAGLLDAADILLCL 195 (205)
T ss_pred -----HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
T ss_conf -----89999999999982999879999999999717
No 256
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=52.92 E-value=17 Score=16.61 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=26.9
Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 861001288868985117765799998663013463111100
Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVC 122 (383)
Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~ 122 (383)
.+.|..-+||+||..+ .++-.+...+++. ++|+++.-.
T Consensus 84 lE~I~aLkPDLIi~~~--~~~~~~~~~l~~~--~i~v~~~~~ 121 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVT--TLEEDLGPKFKQL--GVEATFLNL 121 (289)
T ss_pred HHHHHHCCCCEEEECC--CCHHHHHHHHHHC--CCEEEEECC
T ss_conf 9999736997899557--4258789999860--975999837
No 257
>CHL00148 orf27 Ycf27; Reviewed
Probab=52.91 E-value=5.3 Score=19.97 Aligned_cols=39 Identities=28% Similarity=0.580 Sum_probs=25.8
Q ss_pred HCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEEC
Q ss_conf 100128886898-5117765-799998663013463111100
Q gi|254780767|r 83 LIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYVC 122 (383)
Q Consensus 83 ~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv~ 122 (383)
.+..++||+||+ +.-||.| +.+++.+|+. .++|+|..-+
T Consensus 45 ~~~~~~~DlviLDi~LP~~dG~~l~~~iR~~-~~~PII~LTa 85 (240)
T CHL00148 45 LFHQEQPDLVILDVMMPKLDGYGVCQEIRKE-SDVPIIMLTA 85 (240)
T ss_pred HHHHCCCCEEEEECCCCCCCCCEEEECCCCC-CCCCEEEEEC
T ss_conf 9974799999997999988866305414037-9954899816
No 258
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=52.68 E-value=17 Score=16.59 Aligned_cols=60 Identities=10% Similarity=0.082 Sum_probs=26.9
Q ss_pred HHHHCCCHHHHHHHHHHCCCEEEECCCCCCEEEEE--ECCCCCCEEEEHHHCCCCCCCHHHCCCCCHH
Q ss_conf 35523311566888762753025405774100001--0246761023024407842612420548989
Q gi|254780767|r 269 NAAMAASGTVILELALCGIPVVSIYKSEWIVNFFI--FYIKTWTCALPNLIVDYPLVPEYFNSMIRSE 334 (383)
Q Consensus 269 d~ai~~SGTaTLE~al~g~P~IV~Yk~~~lt~~i~--~lik~~~i~LpNii~~~~ivPEliQ~~~~~~ 334 (383)
..+++.+.+--.|+-+.+.-.|+. .+.++- .-++--|+|+|=+|-.+.+ -+.+.-+++++
T Consensus 233 ~~~ia~a~~~iv~aIl~d~~~vlp-----vs~~l~geYg~~dv~~s~P~vig~~Gv-~~i~~l~L~~~ 294 (315)
T PRK00066 233 YYGIAMALARITKAILNDENAVLP-----VSAYLEGQYGEEDIYIGVPAIVNRNGI-REIVELPLNDD 294 (315)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEE-----EEEEECCCCCCCCEEEEEEEEECCCCE-EEECCCCCCHH
T ss_conf 113999999999999769981899-----999842564774569999999844815-48738998999
No 259
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=52.48 E-value=17 Score=16.57 Aligned_cols=104 Identities=20% Similarity=0.266 Sum_probs=45.8
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHH--HHHHHHHHH-HH
Q ss_conf 987459999768214789999999999738998399997178999478806504445311013674--664599999-99
Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQV--VRHLPQFIF-RI 77 (383)
Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~ev--l~~~~~~~~-~~ 77 (383)
|++++|.++.-=-+|- +.|-.+|-.....--.+-|+.=++ ++|--.. +-+++.++-+--. |..+..=.. --
T Consensus 1 Mk~i~IALvGNPN~GK---STLFN~LTG~~q~VgNwPGvTVEk--k~G~~~~-~~~~~~ivDLPG~YSL~~~S~e~s~dE 74 (772)
T PRK09554 1 MKKLTIGLIGNPNSGK---TTLFNQLTGARQRVGNWAGVTVER--KEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDE 74 (772)
T ss_pred CCCCEEEEECCCCCCH---HHHHHHHHCCCCEEECCCCCEEEE--EEEEEEE-CCCEEEEEECCCCCCCCCCCCCCCCHH
T ss_conf 9735699888998789---999999868998357899764742--3899996-894699997997786999997777308
Q ss_pred HHHHHHCCCCCCCEEE-EECHHHH--HHHHHHHHHH
Q ss_conf 9998610012888689-8511776--5799998663
Q gi|254780767|r 78 NQTVELIVSSKPDVLL-IVDNPDF--THRVAKRVRK 110 (383)
Q Consensus 78 ~~~~~~i~~~~Pd~vi-~iD~pgF--nl~lak~lkk 110 (383)
.-..+.+.+++||++| .+|..-. ||.|.-.+..
T Consensus 75 ~Var~~ll~~~pDvvvnVvDAtnLeRnLyLt~QllE 110 (772)
T PRK09554 75 QIACHYILSGDADLLINVVDASNLERNLYLTLQLLE 110 (772)
T ss_pred HHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 999998613999899998016875442899999997
No 260
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=52.24 E-value=17 Score=16.54 Aligned_cols=135 Identities=18% Similarity=0.234 Sum_probs=74.8
Q ss_pred CCCCEEEEEECCCCHHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHCCCEEE----EC--HHHCC-----E--EEHH-H
Q ss_conf 98745999976821478999999-99997389983999971789994788065----04--44531-----1--0136-7
Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLI-KSLKEMVSYPINLVGVGGPSLQKEGLVSL----FD--FSELS-----V--IGIM-Q 65 (383)
Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li-~~Lk~~~~~~~~~~giGG~~m~~~G~~~~----~~--~~~l~-----v--~G~~-e 65 (383)
|.+-+|-|+.||+.| .|..++ +++++ .+...++.-+|.+.+-+++...+ +. ...-. . ..+. .
T Consensus 1 ~~~~~iAit~GDPaG--IGPEi~~~~~~~-~~~~~~~v~igd~~lL~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 77 (332)
T COG1995 1 MTKPRIAITMGDPAG--IGPELVALALAE-LPIKCELVVIGDKALLEAAAALLGLPVFLLEAIPDPYEAFAAGAIDLPDL 77 (332)
T ss_pred CCCCCEEECCCCCCC--CCHHHHHHHHCC-CCCCCCEEEECCHHHHHHHHHHHCCCCCCHHCCCCHHHHHHCCCCCEEEC
T ss_conf 998856864688666--799999986210-46778769985899999999874665311001466044542147622422
Q ss_pred HH-------------HHHHHHHHHHHHHHHHCCCCCCCEEEE------------ECHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 46-------------645999999999986100128886898------------51177657999986630134631111
Q gi|254780767|r 66 VV-------------RHLPQFIFRINQTVELIVSSKPDVLLI------------VDNPDFTHRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 66 vl-------------~~~~~~~~~~~~~~~~i~~~~Pd~vi~------------iD~pgFnl~lak~lkk~~~~ipvi~y 120 (383)
.+ .+=...+..++..++...+-+.|.+++ +.|||-.--||...+. +-|+.-+
T Consensus 78 ~~~~~~~v~~G~~~~~~g~~~~~~l~~A~~~a~~G~~~aivT~PI~K~~l~~AG~~y~GhTe~LA~~s~~---~~~vMml 154 (332)
T COG1995 78 PLPLPAPVEAGQLSAANGAYVFETLKRAVELALAGEVDAIVTAPINKEALNDAGIPYPGHTEFLAELSGT---HDPVMML 154 (332)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCC---CCEEEEE
T ss_conf 4577676568875713408999999999998736734679965647899996489989778999998579---9717986
Q ss_pred ECCCCCCCCCCCHHHHHHHHH
Q ss_conf 002211003663557999998
Q gi|254780767|r 121 VCPSVWAWREGRARKMCAYIN 141 (383)
Q Consensus 121 v~PqvWAWr~~R~k~~~~~~d 141 (383)
.+|++|+-.-..=--+++..|
T Consensus 155 a~~~Lrv~lvTtHipL~~V~~ 175 (332)
T COG1995 155 AVPELRVALVTTHIPLKDVPD 175 (332)
T ss_pred ECCCCEEEEEEECCCHHHHHH
T ss_conf 146417998750461888776
No 261
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=52.19 E-value=17 Score=16.54 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=27.7
Q ss_pred CCCEEEEECHHHHH---HHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 88868985117765---799998663013463111100221100366355799999864015
Q gi|254780767|r 88 KPDVLLIVDNPDFT---HRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISI 146 (383)
Q Consensus 88 ~Pd~vi~iD~pgFn---l~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~i 146 (383)
+=|++|.+.+.|-+ +.+++.+|+. |.|++-.- ...-..+.++.|.++.+
T Consensus 72 ~~Dv~I~iS~SGeT~e~~~~~~~aK~~--ga~ii~IT--------~~~~S~Lak~aD~~l~i 123 (179)
T TIGR03127 72 KGDLLIAISGSGETESLVTVAKKAKEI--GATVAAIT--------TNPESTLGKLADVVVEI 123 (179)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC--CCEEEEEE--------CCCCCHHHHHCCEEEEE
T ss_conf 999999981999968999999999987--99299997--------98989779949999990
No 262
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=51.84 E-value=18 Score=16.50 Aligned_cols=76 Identities=14% Similarity=0.241 Sum_probs=47.2
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45999976821478999999999973899839999717899947880650444531101367466459999999999861
Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVEL 83 (383)
Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~ 83 (383)
|||+++--|+. .+..+...|++. +.++...+.- .+..+.
T Consensus 1 MkILiVEDd~~---l~~~l~~~L~~~---g~~V~~a~~g-----------------------------------~~al~~ 39 (223)
T PRK11517 1 MKILLIEDNQR---TQEWVTQGLSEA---GYVIDAVSDG-----------------------------------RDGLYL 39 (223)
T ss_pred CEEEEEECCHH---HHHHHHHHHHHC---CCEEEEECCH-----------------------------------HHHHHH
T ss_conf 98999969899---999999999988---9999998999-----------------------------------999999
Q ss_pred CCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEE
Q ss_conf 00128886898-5117765-79999866301346311110
Q gi|254780767|r 84 IVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYV 121 (383)
Q Consensus 84 i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv 121 (383)
+.+.+||++|+ +.-||.+ +.+++.+|+. .++|++..-
T Consensus 40 ~~~~~~DlvilDi~lP~~dG~~l~~~iR~~-~~~pII~lt 78 (223)
T PRK11517 40 ALKDDYALIILDIMLPGMDGWQILQTLRTA-KQTPVICLT 78 (223)
T ss_pred HHCCCCCEEEECCCCCCCCHHHHHHHHHHC-CCCCEEEEE
T ss_conf 852899999984999873689999999856-886489995
No 263
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=51.83 E-value=18 Score=16.50 Aligned_cols=197 Identities=16% Similarity=0.192 Sum_probs=101.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEECCCCCC---CCCC----------------C---CC---C
Q ss_conf 21100366355799999864015677422320025531476388211---2210----------------0---13---5
Q gi|254780767|r 124 SVWAWREGRARKMCAYINQVISILPFEKEVMQRLGGPPTTFVGHPLS---SSPS----------------I---LE---V 178 (383)
Q Consensus 124 qvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~~~~fVGHPl~---d~~~----------------~---~~---~ 178 (383)
.+-||+.+.....+..-+|-+.+.-.|.-|... -++-+.-+ -|+. |... . .. .
T Consensus 365 rilaWG~~~~~lv~~A~~h~iPl~~~EDGFlRS-v~LGs~lt-PPlSLv~Dd~~iYFda~~pS~LE~iLq~~~Fd~ddm~ 442 (671)
T COG3563 365 RILAWGNGKEALVEFAEQHHIPLLRMEDGFLRS-VGLGSNLT-PPLSLVLDDMGIYFDANTPSRLEDILQNQDFDDDDMQ 442 (671)
T ss_pred EEEEECCCCHHHHHHHHHHCCCEEEECCCCEEE-CCCCCCCC-CCEEEEECCCEEEECCCCCHHHHHHHHCCCCCHHHHH
T ss_conf 489825896789999987079703422341342-12666678-9716887375047659993259999862687677899
Q ss_pred HH---------HHH--------HHCCCCCCCCEEEEEECC--CCCCHHHHCCCH---HHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 58---------889--------761876556505998538--743012305111---89998764027351262016633
Q gi|254780767|r 179 YS---------QRN--------KQRNTPSQWKKILLLPGS--RAQEIYKILPFF---ESAVASLVKRNPFFRFSLVTVSS 236 (383)
Q Consensus 179 ~~---------~~~--------~~~~~~~~~~~I~llPGS--R~~EI~~~lP~~---l~~~~~l~~~~~~~~~~i~~~~~ 236 (383)
+. ... ..+........+.|.||- +..-|..--|-. ++.+.....++|+..++.-.-|+
T Consensus 443 RAra~~k~L~Es~iSKYNg~~~~~~~~~~k~~krvLV~GQVEdDASi~YG~~~~mtN~DLlr~vr~~NpdAyIIYKPHPD 522 (671)
T COG3563 443 RARALIKLLTESHISKYNGVGARDLGYGEKTRKRVLVPGQVEDDASIRYGCPSIMTNNDLLRTVRARNPDAYIIYKPHPD 522 (671)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCEEEEEEEEECCCCHHCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCH
T ss_conf 99999999998423111566415543253355089965332366300048840034478999887419884798468904
Q ss_pred H----------HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCEEEE-E--
Q ss_conf 6----------88999999604888505520552035788763552331156688876275302540577410000-1--
Q gi|254780767|r 237 Q----------ENLVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAASGTVILELALCGIPVVSIYKSEWIVNFF-I-- 303 (383)
Q Consensus 237 ~----------~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~Yk~~~lt~~i-~-- 303 (383)
+ .+.+..+.. .+...-...+++..+|-+-+-..++-.|+.+.|++ |.+|-..+-..|- -
T Consensus 523 VlsGnR~~~~dp~~v~~~ad-------~v~e~~~i~dal~~vDeVhTiTSLaGFEALLRgkk-VttyG~PFYaGWGLT~D 594 (671)
T COG3563 523 VLSGNRPGHSDPDDVARYAD-------QVVEDASILDALRTVDEVHTITSLAGFEALLRGKK-VTTYGLPFYAGWGLTDD 594 (671)
T ss_pred HHCCCCCCCCCHHHHHHHHH-------HHHHCCCHHHHHHHHHHEEEEHHHHHHHHHHCCCC-CEECCCCCCCCCCCCCC
T ss_conf 53378768899799999999-------98722869999974414055310330899974786-13416764236676545
Q ss_pred ECC---CCCCEEEEHHHCCCC-CCCHHHCCC
Q ss_conf 024---676102302440784-261242054
Q gi|254780767|r 304 FYI---KTWTCALPNLIVDYP-LVPEYFNSM 330 (383)
Q Consensus 304 ~li---k~~~i~LpNii~~~~-ivPEliQ~~ 330 (383)
++- +..-.+|--+++|-- ++|-++..+
T Consensus 595 r~~~~RR~RkLsleqL~AGalIlYPrYidPk 625 (671)
T COG3563 595 RLPNPRRSRKLSLEQLFAGALILYPRYIDPK 625 (671)
T ss_pred CCCCCCCCCCCCHHHHHHHHEEECCCCCCCC
T ss_conf 5757411111319998612168444334865
No 264
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=51.52 E-value=18 Score=16.47 Aligned_cols=30 Identities=17% Similarity=0.408 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECHHHH
Q ss_conf 999999999986100128886898511776
Q gi|254780767|r 71 PQFIFRINQTVELIVSSKPDVLLIVDNPDF 100 (383)
Q Consensus 71 ~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF 100 (383)
.+++.-+.++.+++++.+||++|.++.=.+
T Consensus 25 ~~v~~g~~~i~~~~~~~~PDviVv~~~DH~ 54 (268)
T cd07367 25 ARVVQGMAEIGRRVRESRPDVLVVISSDHL 54 (268)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 899999999999999839999999807488
No 265
>TIGR01090 apt adenine phosphoribosyltransferase; InterPro: IPR005764 Adenine phosphoribosyltransferase (APRTase, 2.4.2.7 from EC) is a widely distributed enzyme, and its deficiency in humans causes the accumulation of 2,8-dihydroxyadenine. It is the sole catalyst for adenine recycling in most eukaryotes. AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate ; GO: 0003999 adenine phosphoribosyltransferase activity, 0006168 adenine salvage.
Probab=51.34 E-value=10 Score=18.14 Aligned_cols=57 Identities=18% Similarity=0.310 Sum_probs=42.1
Q ss_pred EECHHHCCEEEH-----HHHHHHHHHHHHHHHHHHHHCCCCC----CCEEEEECHHHHH--HHHHHHH
Q ss_conf 504445311013-----6746645999999999986100128----8868985117765--7999986
Q gi|254780767|r 52 LFDFSELSVIGI-----MQVVRHLPQFIFRINQTVELIVSSK----PDVLLIVDNPDFT--HRVAKRV 108 (383)
Q Consensus 52 ~~~~~~l~v~G~-----~evl~~~~~~~~~~~~~~~~i~~~~----Pd~vi~iD~pgFn--l~lak~l 108 (383)
+-++.++.-=|+ +-++.+--.|...++++++++++.+ +|.||+.|+=||= -.||-.+
T Consensus 5 Ir~ipDfP~~GIlFrDITplL~~~~~f~~~id~l~~~~~~~~~~id~d~iVG~EaRGFifG~~LA~~L 72 (175)
T TIGR01090 5 IRSIPDFPKKGILFRDITPLLNNPELFRFLIDLLVERYKDANGEIDADLIVGLEARGFIFGAALAYKL 72 (175)
T ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 56257887796677661701068778999999999999860795151368767667257788999970
No 266
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=51.30 E-value=18 Score=16.45 Aligned_cols=45 Identities=24% Similarity=0.417 Sum_probs=34.9
Q ss_pred HHHHHHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEEC
Q ss_conf 99986100128886898-5117765-799998663013463111100
Q gi|254780767|r 78 NQTVELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYVC 122 (383)
Q Consensus 78 ~~~~~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv~ 122 (383)
-++.+.+..++||++++ |--||.| +-+|+.++.....+|+|+.-|
T Consensus 34 ~eal~~Le~~kpDLifldI~mp~~ngiefaeQvr~i~~~v~iifIss 80 (361)
T COG3947 34 VEALDLLEVFKPDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFISS 80 (361)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 88999998438877999852378608789999987531486899963
No 267
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=51.15 E-value=18 Score=16.43 Aligned_cols=86 Identities=8% Similarity=0.098 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHH
Q ss_conf 99999999861001288868985117765799998663013463111100221100366355799999864015677422
Q gi|254780767|r 73 FIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKE 152 (383)
Q Consensus 73 ~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~ 152 (383)
-..-++++++...++...++-=||.||-..-..+..-......+...+-.=++-.=.+.-...+++.++.+..+||+.-+
T Consensus 80 T~~di~eiv~YA~~rgI~VIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~ld~~~~~t~~fl~~v~~Ev~~lF~~~~~ 159 (326)
T cd06564 80 TKEEFKELIAYAKDRGVNIIPEIDSPGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDGFNPKSD 159 (326)
T ss_pred CHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 89999999999998499898636783378999985956347887788887756899876999999999999986678788
Q ss_pred HHHCCCC
Q ss_conf 3200255
Q gi|254780767|r 153 VMQRLGG 159 (383)
Q Consensus 153 ~f~k~~~ 159 (383)
+|. .+|
T Consensus 160 yiH-iGG 165 (326)
T cd06564 160 TVH-IGA 165 (326)
T ss_pred EEE-ECC
T ss_conf 898-631
No 268
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=50.96 E-value=18 Score=16.41 Aligned_cols=45 Identities=31% Similarity=0.442 Sum_probs=33.8
Q ss_pred HHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 99998610012888689851177657999986630134631111002
Q gi|254780767|r 77 INQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCP 123 (383)
Q Consensus 77 ~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~P 123 (383)
.....+.|.+.+.|++++-.+++..+.++..+.+. ++|.+.-.+|
T Consensus 58 v~~a~kLi~~d~V~~i~G~~~S~~~~a~~~~~~~~--~vp~i~~~~~ 102 (357)
T cd06337 58 GLVAQELILTDKVDLLLAGGTPDTTNPVSDQCEAN--GVPCISTMAP 102 (357)
T ss_pred HHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHH--CCCEEECCCC
T ss_conf 99999998657937999567337589899999983--9977862686
No 269
>COG0614 FepB ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=50.43 E-value=19 Score=16.36 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=27.9
Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 8610012888689851177657999986630134631111002
Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCP 123 (383)
Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~P 123 (383)
.+.+..-+||+||..++ +.+-.+.+.+.+ ++|++.+-.+
T Consensus 108 ~E~i~~lkPDlIi~~~~-~~~~~~~~~~~~---~~pvv~~~~~ 146 (319)
T COG0614 108 LEKIVALKPDLIIASSS-SQDDLIYKLLSL---GAPVVVVDYG 146 (319)
T ss_pred HHHHHHCCCCEEEEECC-CCCHHHHHHHHC---CCCEEEECCC
T ss_conf 99998479989997076-554127999846---9978998887
No 270
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=50.41 E-value=5 Score=20.16 Aligned_cols=79 Identities=15% Similarity=0.103 Sum_probs=35.9
Q ss_pred HHHCCCEEEECC---CCCCEEEEEECCCCCCEEEEHHH---CCCCCCCHHHCCCC-----CHHHHHHHHHHHHCCHHHHH
Q ss_conf 762753025405---77410000102467610230244---07842612420548-----98999999999844989999
Q gi|254780767|r 283 ALCGIPVVSIYK---SEWIVNFFIFYIKTWTCALPNLI---VDYPLVPEYFNSMI-----RSEALVRWIERLSQDTLQRR 351 (383)
Q Consensus 283 al~g~P~IV~Yk---~~~lt~~i~~lik~~~i~LpNii---~~~~ivPEliQ~~~-----~~~~i~~~~~~ll~d~~~r~ 351 (383)
.-.|+|.|+++- ++..|+-++.+=.+ -++-|+-+ +|++|+.+-+..+. +++.+.+. -+++.--.|+
T Consensus 214 ~~~~lpyIsvlt~PTtGGVtASfA~lgDi-iiAEP~AlIGFAG~RVIeqTi~~~LPegFQtaEflleh--G~iD~IV~R~ 290 (305)
T CHL00174 214 SNKKLFYISILTSPTTGGVTASFGMLGDI-IIAEPNAYIAFAGKRVIEQTLNKTVPEGSQAAEYLFHK--GLFDLIVPRN 290 (305)
T ss_pred HCCCCCEEEEECCCCCCCCEEEECCCCCE-EEECCCCEEEECCCHHHHHHHCCCCCCCCCCHHHHHHC--CCCCEEECHH
T ss_conf 45787389997378877801241025665-89758866760561788886189899863226999977--9971676589
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999983
Q gi|254780767|r 352 AMLHGFENLWDRM 364 (383)
Q Consensus 352 ~~~~~~~~~~~~L 364 (383)
++.+.+..+....
T Consensus 291 ~lk~~l~~lL~ih 303 (305)
T CHL00174 291 LLKGVLSELFQLH 303 (305)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999864
No 271
>PRK06924 short chain dehydrogenase; Provisional
Probab=49.99 E-value=19 Score=16.32 Aligned_cols=33 Identities=18% Similarity=0.408 Sum_probs=23.9
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 45999976821478999999999973899839999717
Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGG 41 (383)
Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG 41 (383)
||+.+++|-.|| .|..+.+.|-++ +.++..++-
T Consensus 1 MK~alITGas~G--IG~aiA~~la~~---G~~V~~~~r 33 (251)
T PRK06924 1 MRYVIITGTSKG--LGEAIATQLLEK---GTSVISISR 33 (251)
T ss_pred CCEEEEECCCCH--HHHHHHHHHHHC---CCEEEEEEC
T ss_conf 999999298749--999999999987---999999979
No 272
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=49.94 E-value=19 Score=16.31 Aligned_cols=153 Identities=15% Similarity=0.141 Sum_probs=71.6
Q ss_pred HHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEC----------CCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 99999861001288868985117765799998663013463111100----------22110036635579999986401
Q gi|254780767|r 76 RINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVC----------PSVWAWREGRARKMCAYINQVIS 145 (383)
Q Consensus 76 ~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~----------PqvWAWr~~R~k~~~~~~d~~~~ 145 (383)
......+.+.+.+.+++++--+.+-.+-++..+.+. ++|++.-.+ |.+|.++..-.......++
T Consensus 56 a~~~a~~li~~d~V~aiiG~~~S~~~~a~~~~~~~~--~vp~i~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~---- 129 (336)
T cd06326 56 TVANTRKLIEDDKVFALFGYVGTPTTAAALPLLEEA--GVPLVGPFTGASSLRDPPDRNVFNVRASYADEIAAIVR---- 129 (336)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH--CCEEEECCCCCHHHCCCCCCCEEEECCCHHHHHHHHHH----
T ss_conf 999999998528956998888987899999999983--76278336687242279998568967783899999999----
Q ss_pred CCCCCHHHHHCCCCCCEE---ECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHH
Q ss_conf 567742232002553147---63882112210013558889761876556505998538743012305111899987640
Q gi|254780767|r 146 ILPFEKEVMQRLGGPPTT---FVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVK 222 (383)
Q Consensus 146 ifpFE~~~f~k~~~~~~~---fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~ 222 (383)
++.+. |.+.. |.-.+.-... ...-.+..++.|.. ++.-.+=+.. -.-|-..+.++..
T Consensus 130 -------~~~~~-g~kkvavl~~d~~~g~~~--~~~~~~~~~~~G~~----vv~~~~~~~~------~~Dfs~~l~~i~~ 189 (336)
T cd06326 130 -------HLVTL-GLKRIAVFYQDDAFGKDG--LAGVEKALAARGLK----PVATASYERN------TADVAAAVAQLAA 189 (336)
T ss_pred -------HHHHC-CCCEEEEEECCCHHHHHH--HHHHHHHHHHCCCC----EEEEEEECCC------CCCHHHHHHHHHH
T ss_conf -------99970-997599993587588999--99999999977993----7999986899------8777999999984
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 273512620166336889999996048885055
Q gi|254780767|r 223 RNPFFRFSLVTVSSQENLVRCIVSKWDISPEII 255 (383)
Q Consensus 223 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~ 255 (383)
..|+..++....+..-..+++ +...+....+.
T Consensus 190 ~~pD~v~~~~~~~~~~~~~~q-~~~~G~~~~~~ 221 (336)
T cd06326 190 ARPQAVIMVGAYKAAAAFIRA-LRKAGGGAQFY 221 (336)
T ss_pred CCCCEEEEECCCHHHHHHHHH-HHHCCCCCEEE
T ss_conf 797999992782799999999-99769997599
No 273
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=49.78 E-value=19 Score=16.29 Aligned_cols=42 Identities=12% Similarity=0.089 Sum_probs=28.4
Q ss_pred HHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 99986100128886898511776579999866301346311110
Q gi|254780767|r 78 NQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYV 121 (383)
Q Consensus 78 ~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv 121 (383)
....+.+.+.+.+++|+--+.+-.+.++..+.+. ++|++...
T Consensus 60 ~~a~~Li~~d~V~aviG~~~S~~~~a~~~v~~~~--~vp~i~~~ 101 (347)
T cd06340 60 TEAERLITEEGVVALVGAYQSAVTLAASQVAERY--GVPFVVDG 101 (347)
T ss_pred HHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHH--CEEEEECC
T ss_conf 9999999718946974576737666646999862--84588048
No 274
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=49.34 E-value=10 Score=18.06 Aligned_cols=16 Identities=13% Similarity=-0.074 Sum_probs=9.7
Q ss_pred CCCCEEEEHHHCCCCC
Q ss_conf 6761023024407842
Q gi|254780767|r 307 KTWTCALPNLIVDYPL 322 (383)
Q Consensus 307 k~~~i~LpNii~~~~i 322 (383)
...|+|+|-+|-...|
T Consensus 260 ~~~y~svP~~iG~~Gv 275 (310)
T cd01337 260 EAPFFATPVELGKNGV 275 (310)
T ss_pred CCEEEEEEEEEECCEE
T ss_conf 7479999899934816
No 275
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=49.01 E-value=14 Score=17.17 Aligned_cols=107 Identities=26% Similarity=0.369 Sum_probs=62.0
Q ss_pred HHHHHHCCCCCCCEEEEECHHH--HHHHHHHHHHHHCCCCCCEEEEC-C---------CCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 9998610012888689851177--65799998663013463111100-2---------2110036635579999986401
Q gi|254780767|r 78 NQTVELIVSSKPDVLLIVDNPD--FTHRVAKRVRKKMPNLPIINYVC-P---------SVWAWREGRARKMCAYINQVIS 145 (383)
Q Consensus 78 ~~~~~~i~~~~Pd~vi~iD~pg--Fnl~lak~lkk~~~~ipvi~yv~-P---------qvWAWr~~R~k~~~~~~d~~~~ 145 (383)
..+.+.++.-+||++|++-.++ |+-.+-|.+.+. ..-|+|+--| | +.+.|..||+ .+.+
T Consensus 96 ~~L~e~v~~~kptvLIG~S~~~g~Fteevv~~Ma~~-~~~PIIFaLSNPt~~aE~~peda~~~t~G~a--------i~At 166 (254)
T cd00762 96 GDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEI-NERPVIFALSNPTSKAECTAEEAYTATEGRA--------IFAS 166 (254)
T ss_pred CCHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHC-CCCCEEEECCCCCCCCCCCHHHHHHHCCCCE--------EEEE
T ss_conf 999999986399889995899898899999977633-8898899778999867799999997518978--------9997
Q ss_pred CCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEC-------CCCCCHHHHCCCHHHHHH
Q ss_conf 5677422320025531476388211221001355888976187655650599853-------874301230511189998
Q gi|254780767|r 146 ILPFEKEVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPG-------SRAQEIYKILPFFESAVA 218 (383)
Q Consensus 146 ifpFE~~~f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPG-------SR~~EI~~~lP~~l~~~~ 218 (383)
=-||.+--| +| ++.+. .+-+...+||| ||-..|..- .++.+++
T Consensus 167 Gspf~pv~~---~g-~~~~~------------------------~Q~NN~~iFPGiglG~l~~~a~~itd~--M~~aAA~ 216 (254)
T cd00762 167 GSPFHPVEL---NG-GTYKP------------------------GQGNNLYIFPGVALGVILCRIRHITDD--VFLSAAE 216 (254)
T ss_pred CCCCCCEEE---CC-EEEEE------------------------CCCCEEEECHHHHHHHHHCCCCCCCHH--HHHHHHH
T ss_conf 897788158---88-48850------------------------564137885035466887087679999--9999999
Q ss_pred HHHHC
Q ss_conf 76402
Q gi|254780767|r 219 SLVKR 223 (383)
Q Consensus 219 ~l~~~ 223 (383)
.|...
T Consensus 217 aLA~~ 221 (254)
T cd00762 217 AIASS 221 (254)
T ss_pred HHHHH
T ss_conf 99852
No 276
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=48.75 E-value=20 Score=16.19 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECHHHH
Q ss_conf 999999999986100128886898511776
Q gi|254780767|r 71 PQFIFRINQTVELIVSSKPDVLLIVDNPDF 100 (383)
Q Consensus 71 ~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF 100 (383)
..++..+..+.+++++.+||++|.|-.=.|
T Consensus 31 ~~~f~g~~~~r~~l~~~kPDv~viv~nDH~ 60 (279)
T PRK13365 31 KPLFDGYTPVAAWLAEQQADVLVFFYNDHC 60 (279)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 999999999999999839998999805657
No 277
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=48.73 E-value=15 Score=16.97 Aligned_cols=32 Identities=9% Similarity=0.251 Sum_probs=17.5
Q ss_pred EHHHHH-HHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 136746-64599999999998610012888689
Q gi|254780767|r 62 GIMQVV-RHLPQFIFRINQTVELIVSSKPDVLL 93 (383)
Q Consensus 62 G~~evl-~~~~~~~~~~~~~~~~i~~~~Pd~vi 93 (383)
.+.+.+ .++..+-+.-+++.+.|.++.+++.-
T Consensus 4 ~l~~~I~~~~~~Lt~~er~iA~yil~~~~~~~~ 36 (281)
T COG1737 4 NLLERIRERYDSLTKSERKIADYILANPDEVAL 36 (281)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHH
T ss_conf 599999998852599999999999939678856
No 278
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=48.47 E-value=20 Score=16.16 Aligned_cols=73 Identities=19% Similarity=0.291 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHH-HHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 66459999999999861001288868985117765-79999866301346311110022110036635579999986401
Q gi|254780767|r 67 VRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDFT-HRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVIS 145 (383)
Q Consensus 67 l~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFn-l~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ 145 (383)
++++|.+-....--.+.|..-+||+||.-+ ++| -.....+++. |+|++.+ .|. ....+.+.+..+-.
T Consensus 36 ~~~~p~vG~~~~p~~E~I~~L~PDLVi~~~--~~~~~~~~~~l~~~--gi~v~~~-~~~-------~~~~~~~~i~~lg~ 103 (245)
T cd01144 36 AKKLPRVGGFYQLDLERVLALKPDLVIAWD--DCNVCAVVDQLRAA--GIPVLVS-EPQ-------TLDDILADIRRLGT 103 (245)
T ss_pred HHCCCCCCCCCCCCHHHHHCCCCCEEEEEC--CCCHHHHHHHHHCC--CCEEEEE-CCC-------CHHHHHHHHHHHHH
T ss_conf 714883378889999999525996477426--87768899987604--9769984-899-------99999999999998
Q ss_pred CCCCCH
Q ss_conf 567742
Q gi|254780767|r 146 ILPFEK 151 (383)
Q Consensus 146 ifpFE~ 151 (383)
+|--|.
T Consensus 104 i~g~~~ 109 (245)
T cd01144 104 LAGRPA 109 (245)
T ss_pred HCCCHH
T ss_conf 749746
No 279
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase; InterPro: IPR010175 This clade of mainly archaeal and related bacterial species contains two characterised enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity acting on carbon-nitrogen (but not peptide) bonds in linear amides, 0050897 cobalt ion binding, 0009085 lysine biosynthetic process, 0005737 cytoplasm.
Probab=48.30 E-value=9.5 Score=18.30 Aligned_cols=20 Identities=25% Similarity=0.327 Sum_probs=11.6
Q ss_pred CCCHHHH-HHHHHHHHHHHCC
Q ss_conf 8214789-9999999997389
Q gi|254780767|r 12 EISGDLL-AGDLIKSLKEMVS 31 (383)
Q Consensus 12 E~SGD~~-~a~li~~Lk~~~~ 31 (383)
-+|||-+ +|+.+.++++..+
T Consensus 11 spS~~E~~~a~fl~~~~~~~g 31 (352)
T TIGR01902 11 SPSGKEEEAAKFLEELKKELG 31 (352)
T ss_pred CCCCCHHHHHHHHHHHHHHHC
T ss_conf 987118999999999999708
No 280
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=48.23 E-value=6 Score=19.63 Aligned_cols=40 Identities=25% Similarity=0.423 Sum_probs=29.2
Q ss_pred HHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEEC
Q ss_conf 6100128886898-5117765-799998663013463111100
Q gi|254780767|r 82 ELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYVC 122 (383)
Q Consensus 82 ~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv~ 122 (383)
+.+.+.+||+||+ +.-||.+ +.+++.+|+. ...|+|..-+
T Consensus 39 ~~~~~~~~DlvilDi~LP~~dG~~l~~~iR~~-~~~PiI~lta 80 (240)
T PRK10701 39 ETILREQPDLVLLDIMLPGKDGMTICRDLRPK-WSGPIVLLTS 80 (240)
T ss_pred HHHHHCCCCEEEEECCCCCCCCCEEEEECCCC-CCCCEEEEEE
T ss_conf 99861799999992899767887876311025-8987899940
No 281
>PRK13856 two-component response regulator VirG; Provisional
Probab=48.23 E-value=19 Score=16.25 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=27.9
Q ss_pred HHHHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEEEC
Q ss_conf 986100128886898-5117765-799998663013463111100
Q gi|254780767|r 80 TVELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINYVC 122 (383)
Q Consensus 80 ~~~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~yv~ 122 (383)
..+.+....||++|+ +.-|+.| +.+.+.+|+. ..+|++-.-+
T Consensus 37 ~~~~l~~~~~DlvIlDi~lp~~~Gl~~~~~ir~~-~~~piiilt~ 80 (241)
T PRK13856 37 FNRVLSSETVDVVVVDLNLGREDGLEIVRSLATK-SDVPIIIISG 80 (241)
T ss_pred HHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCC-CCCCEEEEEC
T ss_conf 9999865999999996999876613455564036-9973699972
No 282
>TIGR03288 CoB_CoM_SS_B CoB--CoM heterodisulfide reductase, subunit B. Members of this protein family are subunit B of the CoB--CoM heterodisulfide reductase, or simply heterodisulfide reductase, found in methanogenic archaea. Some archaea species have two copies, HdrB1 and HdrB2.
Probab=47.50 E-value=21 Score=16.07 Aligned_cols=20 Identities=15% Similarity=-0.003 Sum_probs=7.8
Q ss_pred CCCCEEEEECHHHHHHHHHH
Q ss_conf 28886898511776579999
Q gi|254780767|r 87 SKPDVLLIVDNPDFTHRVAK 106 (383)
Q Consensus 87 ~~Pd~vi~iD~pgFnl~lak 106 (383)
..-|+++..-+-+-+++=+.
T Consensus 69 ~g~divt~C~~C~~~l~~~~ 88 (290)
T TIGR03288 69 MGKDILTVCNGCYGSLFEAN 88 (290)
T ss_pred CCCCEEEECCCHHHHHHHHH
T ss_conf 69968984802888899999
No 283
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=47.36 E-value=21 Score=16.05 Aligned_cols=86 Identities=17% Similarity=0.302 Sum_probs=54.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 59999768214789999999999738998399997178999478806504445311013674664599999999998610
Q gi|254780767|r 5 KIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELI 84 (383)
Q Consensus 5 ki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i 84 (383)
|++|++|+..-+.++..+.+.|++. +.++.+. ++|+. .. ....++.+.+
T Consensus 36 k~lII~d~~v~~~~g~~v~~sL~~~-g~~v~~~-~~~e~----------s~-------------------~~i~~l~~~~ 84 (351)
T PRK00843 36 NALIVTGPTTKEIAGKKVEDSLKDA-GFEVDVV-IVKDA----------TM-------------------EEVEKVEEKA 84 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHC-CCEEEEE-ECCCC----------CH-------------------HHHHHHHHHH
T ss_conf 5899989527899999999999866-9859999-37999----------99-------------------9999999999
Q ss_pred CCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCC
Q ss_conf 01288868985117765799998663013463111100221
Q gi|254780767|r 85 VSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSV 125 (383)
Q Consensus 85 ~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~Pqv 125 (383)
+..+.|++|.+- .|=-+-++|++--. .|+|++. -|+.
T Consensus 85 ~~~~~d~vi~~G-gG~~~D~~k~~a~~-~~~p~i~--vpT~ 121 (351)
T PRK00843 85 RDSGAGFLIGVG-GGSSIDVAKLASTR-LGIPFIS--VPTA 121 (351)
T ss_pred HHCCCCEEEEEC-CHHHHHHHHHHHHH-CCCCEEE--ECCC
T ss_conf 845999899956-51684899999998-2999899--5272
No 284
>PRK13136 consensus
Probab=47.11 E-value=21 Score=16.03 Aligned_cols=120 Identities=18% Similarity=0.216 Sum_probs=58.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC---------CHHHHHCCCEEE---------EC---------HHHC
Q ss_conf 99997682147899999999997389983999971---------789994788065---------04---------4453
Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG---------GPSLQKEGLVSL---------FD---------FSEL 58 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG---------G~~m~~~G~~~~---------~~---------~~~l 58 (383)
-|+.||.+|=|.-. .++++|-+. + +.+.=+| ||--|.+....+ ++ -..+
T Consensus 16 ~yitaG~P~~e~s~-~~~~~l~~~-G--~DiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~v~~~r~~~~~pi 91 (253)
T PRK13136 16 AYLTAGDGGLERSL-ESLLALAKG-G--VNILEVGVPFSDPVADGPVIQEASIRALAQGTTLHDVLTLITSFRQHSEIPI 91 (253)
T ss_pred EEECCCCCCHHHHH-HHHHHHHHC-C--CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCE
T ss_conf 88648489989999-999999965-9--9989978998886665799999999999869979999999998225789888
Q ss_pred CEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHH
Q ss_conf 110136746645999999999986100128886898511776-5799998663013463111100221100366355799
Q gi|254780767|r 59 SVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMC 137 (383)
Q Consensus 59 ~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~ 137 (383)
-.||.+..+.++. .+..+.+++..-|.+|..|-|-= .-.+.+.+++. |+..|..|+|+- ...|++++.
T Consensus 92 vlM~Y~N~i~~~G------~~f~~~~~~~GvdGlIipDLP~eE~~~~~~~~~~~--~i~~I~liaPtt---~~eRi~~i~ 160 (253)
T PRK13136 92 ILFTYFNPLLAAG------DKIYQQMKSAGVDGCLVVDLPVEEAAPHLTACKTA--KIAPILLISPST---TQERLKKIN 160 (253)
T ss_pred EEECCCHHHHHHH------HHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHC--CCCCEEEECCCC---CHHHHHHHH
T ss_conf 9986517999979------99999999749872006789977769999999975--887125526899---889999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780767|r 138 AYI 140 (383)
Q Consensus 138 ~~~ 140 (383)
+..
T Consensus 161 ~~a 163 (253)
T PRK13136 161 EHG 163 (253)
T ss_pred HCC
T ss_conf 608
No 285
>TIGR00504 pyro_pdase pyrrolidone-carboxylate peptidase; InterPro: IPR000816 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad . This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins , . PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis . The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies , .; GO: 0004219 pyroglutamyl-peptidase I activity, 0006508 proteolysis.
Probab=46.92 E-value=16 Score=16.81 Aligned_cols=87 Identities=18% Similarity=0.198 Sum_probs=36.7
Q ss_pred HHHCCC-HHHHHHHH----HHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCE---EEEECCCCHHHHH--------HHHH
Q ss_conf 230511-18999876----402735126201663368899999960488850---5520552035788--------7635
Q gi|254780767|r 207 YKILPF-FESAVASL----VKRNPFFRFSLVTVSSQENLVRCIVSKWDISPE---IIIDKEQKKQVFM--------TCNA 270 (383)
Q Consensus 207 ~~~lP~-~l~~~~~l----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~l~--------~sd~ 270 (383)
.+.+|. |.++.+.| .+..|++.+.+-.+|+..+.--+.+.-+-.+.. +--..++ ...- +|.+
T Consensus 38 a~~~P~~F~~A~~~l~~~i~~~~P~~vI~~G~~PGR~~IsvERvA~N~~DARryGipDn~G~--qp~De~~~~~GPaAYf 115 (220)
T TIGR00504 38 ARILPVAFKEALEALRQAIDEVEPDIVIALGLAPGRSQISVERVAINLNDARRYGIPDNEGE--QPIDEPIVPDGPAAYF 115 (220)
T ss_pred EEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCCCCCCCEEE
T ss_conf 75355257999999999998509544885157679876508888773576203578878888--6888756888872054
Q ss_pred HHCCCHHHHHHHHHHCCCEEEECCC
Q ss_conf 5233115668887627530254057
Q gi|254780767|r 271 AMAASGTVILELALCGIPVVSIYKS 295 (383)
Q Consensus 271 ai~~SGTaTLE~al~g~P~IV~Yk~ 295 (383)
+=.--=..+.+.=-.|+|..|.|-.
T Consensus 116 at~Pvr~mv~~mk~~GipA~vS~tA 140 (220)
T TIGR00504 116 ATLPVRAMVKAMKKAGIPAAVSYTA 140 (220)
T ss_pred CCCCHHHHHHHHHHCCCCCCHHHHH
T ss_conf 3270899999998669972122353
No 286
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=46.75 E-value=21 Score=15.99 Aligned_cols=152 Identities=17% Similarity=0.259 Sum_probs=74.2
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH--HHHCC------------CEEEECHHHCCE---EEHHH
Q ss_conf 74599997682147899999999997389983999971789--99478------------806504445311---01367
Q gi|254780767|r 3 SLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPS--LQKEG------------LVSLFDFSELSV---IGIMQ 65 (383)
Q Consensus 3 ~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~--m~~~G------------~~~~~~~~~l~v---~G~~e 65 (383)
+|||.+---.+||-.||-+|++.|++. +.++++.=--+.+ ++.+. ....+|-++++. .|=+.
T Consensus 2 ~~riivgisGASG~iygvrlLe~L~~~-~~e~hlviS~~a~~~~~~E~~~~~~~~~~~~~a~~~~~~~D~~A~iASGS~~ 80 (191)
T COG0163 2 MKRIIVGISGASGAIYGVRLLEVLREL-GVETHLVISKAAKKTLKYETGNDESLGEVLALADVVHDEKDIGAPIASGSFR 80 (191)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHC-CCEEEEEECHHHHHHHHHHHCCCHHHHHHHHHCCEECCHHHCCCCCCCCCCC
T ss_conf 827999973664289999999999746-9569999867899999987476310677742010226787716765578877
Q ss_pred ---------HHHHHHHHH-----HHHHHHHH-HCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC--
Q ss_conf ---------466459999-----99999986-1001288868985117765799998663013463111100221100--
Q gi|254780767|r 66 ---------VVRHLPQFI-----FRINQTVE-LIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAW-- 128 (383)
Q Consensus 66 ---------vl~~~~~~~-----~~~~~~~~-~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAW-- 128 (383)
-.+.+..+- .++.+.-+ .+++.+|-+++.=..|=--..|-..+|-...|. .|.|-+=||
T Consensus 81 ~~gMiI~PCSmkTla~IA~G~~dnLi~RAAdV~LKErR~LVLv~REtPl~~ihLeNMlkls~~Ga----iI~Pp~PaFY~ 156 (191)
T COG0163 81 TDGMIIAPCSMKTLAAIAHGFADNLITRAADVALKERRPLVLVPRETPLSLIHLENMLKLAEMGA----IIMPPMPAFYH 156 (191)
T ss_pred CCCEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCC----EECCCCHHHHC
T ss_conf 68479994727779999811421489898899886178259996378854899999999998889----86579706644
Q ss_pred CCCCHHHHHH-HHHHHCCCCCCCHHHHHCCCC
Q ss_conf 3663557999-998640156774223200255
Q gi|254780767|r 129 REGRARKMCA-YINQVISILPFEKEVMQRLGG 159 (383)
Q Consensus 129 r~~R~k~~~~-~~d~~~~ifpFE~~~f~k~~~ 159 (383)
+++.+..+.. .+-+++-.|--|.+.|+++.|
T Consensus 157 kP~sieDlvd~~v~rvLD~lgI~~~l~~RW~~ 188 (191)
T COG0163 157 KPQSIEDLVDFVVGRVLDLLGIEHDLYKRWQG 188 (191)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCC
T ss_conf 99889999999999999984899740102377
No 287
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=46.74 E-value=12 Score=17.67 Aligned_cols=35 Identities=23% Similarity=0.480 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEECCCCC
Q ss_conf 6635579999986401567742232002553147638821
Q gi|254780767|r 130 EGRARKMCAYINQVISILPFEKEVMQRLGGPPTTFVGHPL 169 (383)
Q Consensus 130 ~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~~~~fVGHPl 169 (383)
++|+-.+-+...+|+..|| + | +++--++.|+|.|.
T Consensus 82 kS~~Vi~GrVtEqlaPffp---~-f-~ynPkD~RfIGTPv 116 (175)
T COG4741 82 KSRAVILGRVTEQLAPFFP---E-F-KYNPKDARFIGTPV 116 (175)
T ss_pred HHHHHHHHHHHHHHCCCCC---C-C-CCCCCCCEEECCCC
T ss_conf 7688886355765331055---7-7-76975551207971
No 288
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=46.67 E-value=21 Score=15.98 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECHHHHH
Q ss_conf 9999999999861001288868985117765
Q gi|254780767|r 71 PQFIFRINQTVELIVSSKPDVLLIVDNPDFT 101 (383)
Q Consensus 71 ~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFn 101 (383)
..++..+..+.+++++.+||++|.|-.=.||
T Consensus 31 ~~~f~a~~~~r~~l~~~~PDvvvvv~~DH~~ 61 (276)
T cd07949 31 KPFFDGFPPVHDWLEKAKPDVAVVFYNDHGL 61 (276)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
T ss_conf 8999889999999998499989998256787
No 289
>PTZ00325 malate dehydrogenase; Provisional
Probab=46.63 E-value=12 Score=17.69 Aligned_cols=27 Identities=7% Similarity=-0.095 Sum_probs=13.1
Q ss_pred CCCCEEEEHHHCCCCCCCHHHCC-CCCHH
Q ss_conf 67610230244078426124205-48989
Q gi|254780767|r 307 KTWTCALPNLIVDYPLVPEYFNS-MIRSE 334 (383)
Q Consensus 307 k~~~i~LpNii~~~~ivPEliQ~-~~~~~ 334 (383)
...|+|+|=+|-... +-|.+.- +.|.+
T Consensus 259 ~~~~lg~P~viG~~G-ve~iielp~L~~~ 286 (313)
T PTZ00325 259 ECPFFGSPVELGKNG-VEKVLPIPPLNAY 286 (313)
T ss_pred CCEEEEEEEEEECCE-EEEECCCCCCCHH
T ss_conf 709999998991897-8997778889999
No 290
>PRK04507 consensus
Probab=46.56 E-value=21 Score=15.97 Aligned_cols=104 Identities=14% Similarity=0.180 Sum_probs=55.1
Q ss_pred CCCCEEEEEECCCCHHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHH-----CCCEEE-ECHHH-------CCEEEHHHH
Q ss_conf 98745999976821478999999-99997389983999971789994-----788065-04445-------311013674
Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLI-KSLKEMVSYPINLVGVGGPSLQK-----EGLVSL-FDFSE-------LSVIGIMQV 66 (383)
Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li-~~Lk~~~~~~~~~~giGG~~m~~-----~G~~~~-~~~~~-------l~v~G~~ev 66 (383)
|..-+|.|..|+++| .|..++ +++++. ..+.++..+|.+..-+ .|.+.- .+.++ +.+.-+.+.
T Consensus 1 M~~P~IaIT~GDPaG--IGPEIilK~~~~~-~~~~~~vvigd~~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 77 (323)
T PRK04507 1 MMVPSLALVPGEPAG--IGPELCVRLAQQP-RSDAHLIAYADPDTLHSAAKALSLPVRLLDPDQPARAPGDLPLHPVRQA 77 (323)
T ss_pred CCCCEEEEECCCCCH--HHHHHHHHHHHCC-CCCCCEEEEECHHHHHHHHHHCCCCEEECCCCCHHHCCCCCEEEECCCC
T ss_conf 999838991588626--6999999998666-4589989998999999999866998176273204326897225213455
Q ss_pred ---------HHHHHHHHHHHHHHHHHCCCCCCCEEEE------------ECHHHHHHHHHHH
Q ss_conf ---------6645999999999986100128886898------------5117765799998
Q gi|254780767|r 67 ---------VRHLPQFIFRINQTVELIVSSKPDVLLI------------VDNPDFTHRVAKR 107 (383)
Q Consensus 67 ---------l~~~~~~~~~~~~~~~~i~~~~Pd~vi~------------iD~pgFnl~lak~ 107 (383)
-.+-...+..++...+.+++.+.|++|+ .+|||-.--||++
T Consensus 78 ~~~~~G~~~~~~g~~~~~~l~~Av~~~~~g~~~aiVTaPInK~~l~~aG~~f~GHTE~La~~ 139 (323)
T PRK04507 78 VPTRFGAPDPANAAAVIAGLRGAAGDCLHGRLQGIVTGPVHKAVINAGGIAYTGTTELLAAQ 139 (323)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHH
T ss_conf 76768986878999999999999999975997799977536999985799989726999887
No 291
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=46.41 E-value=21 Score=15.96 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=28.7
Q ss_pred HHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 99998610012888689851177657999986630134631111
Q gi|254780767|r 77 INQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 77 ~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~y 120 (383)
.+...+.+.+.+.+++++-.+.+-.+-++..+.+. ++|++..
T Consensus 56 ~~~a~~Li~~~~V~aviG~~~S~~~~A~~~~~~~~--~vp~i~~ 97 (347)
T cd06335 56 LQNAQELAADEKVVAVLGGLHTPVALANLEFIQQN--KIPLIGP 97 (347)
T ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHC--CEEEECC
T ss_conf 99999999549926874577722345532157757--9438636
No 292
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=46.37 E-value=21 Score=15.95 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECHHHH
Q ss_conf 999999999986100128886898511776
Q gi|254780767|r 71 PQFIFRINQTVELIVSSKPDVLLIVDNPDF 100 (383)
Q Consensus 71 ~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF 100 (383)
..++..+..+.+++++.+||++|.|-.=.|
T Consensus 31 ~~~f~a~~~~r~~l~~~~PDvvVvv~nDH~ 60 (279)
T PRK13364 31 KPFFDGFPPVREWLEKVKPDVAVVFYNDHG 60 (279)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 999998999999999849998999805668
No 293
>TIGR02875 spore_0_A sporulation transcription factor Spo0A; InterPro: IPR012052 Members of this group are response regulators/transcription factors that contain CheY-like receiver (phosphoacceptor) domain and a unique DNA-binding domain. Spo0A controls the entry of Bacillus subtilis into the developmental process of sporulation . Activation of the Spo0A transcription factor by phosphorylation serves as a developmental checkpoint and to integrate several physiological signals that control entry into the sporulation pathway. The signals are generated by conditions of nutrient deprivation, high cell density, the Krebs cycle, DNA replication, DNA damage, and some aspect of the chromosome partitioning machinery . Activated Spo0A has multiple functions . It represses promoters (such as the abrB promoter) by binding to sites (0A boxes) downstream from the transcription start site. Spo0A also activates transcription from promoters used by two forms of RNA polymerase that differ by containing either the major sigma factor, sigma A (e.g. the spoIIE and spoIIG promoters) or the alternate sigma factor, sigma H (e.g. the spoIIA promoter). At promoters activated by Spo0A, the 0A boxes lie upstream of the transcription-initiation site.; GO: 0003677 DNA binding, 0005509 calcium ion binding, 0000160 two-component signal transduction system (phosphorelay), 0042173 regulation of sporulation, 0045449 regulation of transcription, 0050906 detection of stimulus during sensory perception.
Probab=46.33 E-value=14 Score=17.27 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 3688999999604888505520552035788763552331
Q gi|254780767|r 236 SQENLVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAAS 275 (383)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd~ai~~S 275 (383)
+++..+.+.+.+.+.+.++. |. -.|..|= .++.+
T Consensus 155 dLe~~iT~iiHE~GVPAHiK---GY--~YLRdAI-~mV~~ 188 (270)
T TIGR02875 155 DLEAEITNIIHEIGVPAHIK---GY--MYLRDAI-LMVLK 188 (270)
T ss_pred CHHHHHHHHHHHCCCCCCCC---CC--HHHHHHH-HHHHH
T ss_conf 53578999998628988634---21--0588999-98750
No 294
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=46.19 E-value=22 Score=15.94 Aligned_cols=263 Identities=17% Similarity=0.213 Sum_probs=131.7
Q ss_pred CCCCCCEEEEE-CHHHHHHHHHHHHHHHCCCCCCEEE-----ECCCCCCCCCCCHHHHHHH-----------------HH
Q ss_conf 01288868985-1177657999986630134631111-----0022110036635579999-----------------98
Q gi|254780767|r 85 VSSKPDVLLIV-DNPDFTHRVAKRVRKKMPNLPIINY-----VCPSVWAWREGRARKMCAY-----------------IN 141 (383)
Q Consensus 85 ~~~~Pd~vi~i-D~pgFnl~lak~lkk~~~~ipvi~y-----v~PqvWAWr~~R~k~~~~~-----------------~d 141 (383)
...+||-+|-| ||- =+.+++.||++.++.++-+| -+|.+|.=-++|-..++.. ++
T Consensus 127 ~~~~~~D~VWVHDYh--L~llP~~LR~~~~~~~igfFlHiPFPs~eifr~LP~r~eil~glL~~DlIGF~t~~y~r~Fl~ 204 (460)
T cd03788 127 EVLRPGDLVWVHDYH--LLLLPQMLRERGPDARIGFFLHIPFPSSEIFRCLPWREELLRGLLGADLIGFQTERYARNFLS 204 (460)
T ss_pred HHCCCCCEEEEECCH--HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHCCCHHHHHHHHHHCCEEEECCHHHHHHHHH
T ss_conf 856899879996416--776899999858998489887079999899976976799999987477666468899999999
Q ss_pred HHCCCCCCCHHHHHCCCCCCEEECCC-------CCCCCC------CCCCCHHHHHHH-CCCCCCCCEEEEEECCCCCCHH
Q ss_conf 64015677422320025531476388-------211221------001355888976-1876556505998538743012
Q gi|254780767|r 142 QVISILPFEKEVMQRLGGPPTTFVGH-------PLSSSP------SILEVYSQRNKQ-RNTPSQWKKILLLPGSRAQEIY 207 (383)
Q Consensus 142 ~~~~ifpFE~~~f~k~~~~~~~fVGH-------Pl~d~~------~~~~~~~~~~~~-~~~~~~~~~I~llPGSR~~EI~ 207 (383)
.+--+++-|... ..-+.|-|| |+-=+. .......+..++ .....+++ .++ |-=+-+-.
T Consensus 205 ~~~r~l~~~~~~-----~~~v~~~gr~v~v~~~PigId~~~~~~~~~~~~~~~~~~~l~~~~~~~~--li~-gvDRlDy~ 276 (460)
T cd03788 205 CCSRLLGLEVTD-----DGGVEYGGRRVRVGAFPIGIDPDAFRKLAASPEVQERAAELRERLGGRK--LIV-GVDRLDYS 276 (460)
T ss_pred HHHHHCCCCCCC-----CCEEEECCEEEEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE--EEE-ECCCCCCC
T ss_conf 999970985247-----9859999989999898040188999998628324799999998737971--999-62532111
Q ss_pred HHCCCHHHHHHHHHHCCCCC----EEEECCCCCH---------HHHHHHHHH----HCCC---CCEEEE----ECCCCHH
Q ss_conf 30511189998764027351----2620166336---------889999996----0488---850552----0552035
Q gi|254780767|r 208 KILPFFESAVASLVKRNPFF----RFSLVTVSSQ---------ENLVRCIVS----KWDI---SPEIII----DKEQKKQ 263 (383)
Q Consensus 208 ~~lP~~l~~~~~l~~~~~~~----~~~i~~~~~~---------~~~~~~~~~----~~~~---~~~i~~----~~~~~~~ 263 (383)
+.+|.-+.+.+.+.+++|+. .++..+.|+. ...+...+. +++. .+...+ ..++...
T Consensus 277 KGi~~kl~Afe~fL~~~Pe~~~kvvlvQia~psr~~v~~y~~l~~~i~~~v~~IN~~fg~~~w~PI~y~~~~~~~~el~a 356 (460)
T cd03788 277 KGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAA 356 (460)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHH
T ss_conf 48788999999999869143377799999258776755789999999999999861437899702999917999999999
Q ss_pred HHHHHHHHHCCC---H--HHHHHHHHHCC--CEEEECCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHH
Q ss_conf 788763552331---1--56688876275--3025405774100001024676102302440784261242054898999
Q gi|254780767|r 264 VFMTCNAAMAAS---G--TVILELALCGI--PVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEAL 336 (383)
Q Consensus 264 ~l~~sd~ai~~S---G--TaTLE~al~g~--P~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i 336 (383)
++..||+++++| | .++.|..++.. |.|++ | ..|.|-...+.+-- +=+-.+.+.+
T Consensus 357 ly~~ADv~lVT~lrDGMNLvakEyva~q~~~~GvLI-----L---------SefaGaa~~L~~Al-----~VNP~d~~~~ 417 (460)
T cd03788 357 LYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLI-----L---------SEFAGAAEELSGAL-----LVNPYDIDEV 417 (460)
T ss_pred HHHHHHEEEECCCCCCCCCCCHHHEEEECCCCCEEE-----E---------ECCCCCHHHHCCCE-----EECCCCHHHH
T ss_conf 998610578553423325341311367559995599-----9---------65524366728787-----9799998999
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99999984498999999999999999838999989999999998
Q gi|254780767|r 337 VRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAEIVLQ 380 (383)
Q Consensus 337 ~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~ 380 (383)
++++..=|.-+. ++..+..+.+++.+.... +..-+ +..++
T Consensus 418 a~ai~~AL~M~~--~Er~~R~~~l~~~v~~~~-~~~W~-~~fl~ 457 (460)
T cd03788 418 ADAIHRALTMPL--EERRERHRKLREYVRTHD-VQAWA-NSFLD 457 (460)
T ss_pred HHHHHHHHCCCH--HHHHHHHHHHHHHHHHCC-HHHHH-HHHHH
T ss_conf 999999975999--999999999999988579-99999-99999
No 295
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=46.18 E-value=22 Score=15.93 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECHHHHH
Q ss_conf 9999999999861001288868985117765
Q gi|254780767|r 71 PQFIFRINQTVELIVSSKPDVLLIVDNPDFT 101 (383)
Q Consensus 71 ~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFn 101 (383)
..++..+..+.+++++.+||++|.|-.=.||
T Consensus 31 ~~~f~a~~~~r~~l~~~~PDv~viv~~DH~~ 61 (277)
T cd07950 31 APIFDGYEPVKQWLAEQKPDVLFMVYNDHVT 61 (277)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
T ss_conf 9999999999999997399989998246787
No 296
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=45.99 E-value=22 Score=15.92 Aligned_cols=50 Identities=10% Similarity=0.073 Sum_probs=29.4
Q ss_pred HHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEE--CCCCCCC
Q ss_conf 999986100128886898511776579999866301346311110--0221100
Q gi|254780767|r 77 INQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYV--CPSVWAW 128 (383)
Q Consensus 77 ~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv--~PqvWAW 128 (383)
.....+.+...+.+++|+--+.+-.+-.+..+.+. ++|++..- +|++..+
T Consensus 56 ~~~a~~Lv~~d~V~~viG~~~S~~~~a~~~v~~~~--~vp~i~~~~~~~~~~~~ 107 (344)
T cd06348 56 INAFQTLINKDRVLAIIGPTLSQQAFAADPIAERA--GVPVVGPSNTAKGIPEI 107 (344)
T ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHC--CCCEECCCCCCCCCCCC
T ss_conf 99999998638946995687742555344899875--99276157566555657
No 297
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.98 E-value=13 Score=17.45 Aligned_cols=41 Identities=7% Similarity=0.115 Sum_probs=32.0
Q ss_pred HHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 9998610012888689851177657999986630134631111
Q gi|254780767|r 78 NQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 78 ~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~y 120 (383)
.++.+.+++.+-=.|+-+|.++=-.++++.|.+. |++++-+
T Consensus 7 ~~vl~~l~~~~iipVvr~~~~e~a~~~a~aL~~g--Gi~~iEi 47 (223)
T PRK07114 7 IAVLNAMKSTGMVPVFYHSDIEVAKKVVKACYDG--GVRAFEF 47 (223)
T ss_pred HHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHC--CCCEEEE
T ss_conf 9999999879979999828999999999999988--9988999
No 298
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=45.90 E-value=22 Score=15.91 Aligned_cols=153 Identities=9% Similarity=0.135 Sum_probs=71.4
Q ss_pred HHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEE--------CCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 9986100128886898511776579999866301346311110--------02211003663557999998640156774
Q gi|254780767|r 79 QTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYV--------CPSVWAWREGRARKMCAYINQVISILPFE 150 (383)
Q Consensus 79 ~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv--------~PqvWAWr~~R~k~~~~~~d~~~~ifpFE 150 (383)
...+.+.+.+.++++.- +.+.+......+.+. ++|++... .|..|.|...-.-......+
T Consensus 58 ~a~~Li~~~~V~ai~G~-~s~~~~~~~~~~~~~--~ip~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~--------- 125 (341)
T cd06341 58 CARDLVEDDKVVAVVGG-SSGAGGSALPYLAGA--GIPVIGGAGTSAWELTSPNSFPFSGGTPASLTTWGD--------- 125 (341)
T ss_pred HHHHHHHCCCCEEEEEC-CCHHHHHHHHHHHHC--CCEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHH---------
T ss_conf 99999852892899908-862679999999987--971994687772202788889980687799999999---------
Q ss_pred HHHHHCCCCCCEEECCCCCCCCCC-CCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEE
Q ss_conf 223200255314763882112210-0135588897618765565059985387430123051118999876402735126
Q gi|254780767|r 151 KEVMQRLGGPPTTFVGHPLSSSPS-ILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRF 229 (383)
Q Consensus 151 ~~~f~k~~~~~~~fVGHPl~d~~~-~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~ 229 (383)
|..+..+.+...+.++--+.-. .........++.|.. ++.-.+=.+. -+-|-..+.++....|+..+
T Consensus 126 --~~~~~~~~k~~~~~~~~~~~g~~~~~~~~~~~~~~G~~----vv~~~~~~~~------~~D~~~~v~~l~~~~pd~V~ 193 (341)
T cd06341 126 --FAKDQGGTRAVALVTALSAAVSAAAALLARSLAAAGVS----VAGIVVITAT------APDPTPQAQQAAAAGADAII 193 (341)
T ss_pred --HHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCC----EEEEEECCCC------CCCHHHHHHHHHHCCCCEEE
T ss_conf --99964898489999358358899999999999975995----4578744899------98778999999856969999
Q ss_pred EECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 201663368899999960488850552
Q gi|254780767|r 230 SLVTVSSQENLVRCIVSKWDISPEIII 256 (383)
Q Consensus 230 ~i~~~~~~~~~~~~~~~~~~~~~~i~~ 256 (383)
.....+..-..+++ .++.+....+..
T Consensus 194 ~~~~~~~~~~~~k~-~~~~G~~~~~~~ 219 (341)
T cd06341 194 TVLDAAVCASVLKA-VRAAGLTPKVVL 219 (341)
T ss_pred EECCCHHHHHHHHH-HHHCCCCCCEEE
T ss_conf 90684789999999-997699971899
No 299
>KOG1192 consensus
Probab=45.80 E-value=22 Score=15.90 Aligned_cols=39 Identities=21% Similarity=-0.053 Sum_probs=26.1
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 7459999768214789999999999738998399997178
Q gi|254780767|r 3 SLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGP 42 (383)
Q Consensus 3 ~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~ 42 (383)
...|++..-..|...-...+++.|..+ +.++.+.-....
T Consensus 6 ~~~il~~~p~~sH~~~~~~la~~L~~~-gh~vt~~~~~~~ 44 (496)
T KOG1192 6 AHNILVPFPGQSHLNPMLQLAKRLAER-GHNVTVVTPSFN 44 (496)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHC-CCEEEEEECCCC
T ss_conf 079999898704899999999999978-994999956541
No 300
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=45.80 E-value=22 Score=15.90 Aligned_cols=71 Identities=23% Similarity=0.455 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCHH------HHHCCC--EEEECHHHCCEEEHHHHHHHHHHHHH-----HHHHHHHHC
Q ss_conf 99999999997389983999971789------994788--06504445311013674664599999-----999998610
Q gi|254780767|r 18 LAGDLIKSLKEMVSYPINLVGVGGPS------LQKEGL--VSLFDFSELSVIGIMQVVRHLPQFIF-----RINQTVELI 84 (383)
Q Consensus 18 ~~a~li~~Lk~~~~~~~~~~giGG~~------m~~~G~--~~~~~~~~l~v~G~~evl~~~~~~~~-----~~~~~~~~i 84 (383)
+|-.=++.|++ ..+-+.|+||-. +...|+ -++.|++++.+.-.= +++..+.. ...-+++.+
T Consensus 20 ~G~~~lekl~~---~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~N---RQi~A~~~~iGk~Kv~vm~eri 93 (263)
T COG1179 20 YGEDGLEKLKQ---AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTN---RQIHALLGDIGKPKVEVMKERI 93 (263)
T ss_pred CCHHHHHHHHC---CCEEEEECCCHHHHHHHHHHHCCCCEEEEEECHHCCCCCCC---HHHHHHHHHCCCHHHHHHHHHH
T ss_conf 27668999750---94899945845399999999818881899712010222321---2667766231437899999999
Q ss_pred CCCCCCEEEE
Q ss_conf 0128886898
Q gi|254780767|r 85 VSSKPDVLLI 94 (383)
Q Consensus 85 ~~~~Pd~vi~ 94 (383)
+.-+|.+=|.
T Consensus 94 ~~InP~c~V~ 103 (263)
T COG1179 94 KQINPECEVT 103 (263)
T ss_pred HHHCCCCEEE
T ss_conf 8619874676
No 301
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=45.78 E-value=13 Score=17.40 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=16.8
Q ss_pred CCCCCCEEEEECHHHHHH--------HHHHHHHHHCCCCCCEE
Q ss_conf 012888689851177657--------99998663013463111
Q gi|254780767|r 85 VSSKPDVLLIVDNPDFTH--------RVAKRVRKKMPNLPIIN 119 (383)
Q Consensus 85 ~~~~Pd~vi~iD~pgFnl--------~lak~lkk~~~~ipvi~ 119 (383)
+..+||+||-==..|-|+ -++..+-....|||-|=
T Consensus 84 ~~~~PDLVvSGIN~G~NlG~dv~ySGTVgAA~Eg~~~gipsIA 126 (261)
T PRK13931 84 KDAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIA 126 (261)
T ss_pred CCCCCCEEEECCCCCCCCEEEEECHHHHHHHHHHHHCCCCCEE
T ss_conf 4899888996765887654514331888999999983999578
No 302
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=45.75 E-value=21 Score=16.05 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=21.0
Q ss_pred CCCCEEEEECHHHHHH---HHHHHHHHHCCCCCCEEE
Q ss_conf 2888689851177657---999986630134631111
Q gi|254780767|r 87 SKPDVLLIVDNPDFTH---RVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 87 ~~Pd~vi~iD~pgFnl---~lak~lkk~~~~ipvi~y 120 (383)
.+=|++|.|.+.|-.- ..++.+|++ |+|++=.
T Consensus 46 ~~~D~vi~iS~SG~t~e~~~~~~~ak~~--g~~vi~I 80 (87)
T cd04795 46 RKGDVVIALSYSGRTEELLAALEIAKEL--GIPVIAI 80 (87)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC--CCCEEEE
T ss_conf 8999899997997988999999999987--9989998
No 303
>CHL00067 rps2 ribosomal protein S2
Probab=45.68 E-value=22 Score=15.89 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=12.6
Q ss_pred HHHHHHHCCCEEEECCCC
Q ss_conf 688876275302540577
Q gi|254780767|r 279 ILELALCGIPVVSIYKSE 296 (383)
Q Consensus 279 TLE~al~g~P~IV~Yk~~ 296 (383)
-.||..+|+|.|-+-.|+
T Consensus 173 i~Ea~kL~IPvIaivDTn 190 (227)
T CHL00067 173 LRECIKLGIPTISIVDTN 190 (227)
T ss_pred HHHHHHCCCCEEEEEECC
T ss_conf 999987599989996389
No 304
>pfam03959 FSH1 Serine hydrolase (FSH1). This is a family of serine hydrolases.
Probab=45.67 E-value=22 Score=15.88 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=31.4
Q ss_pred CCCEEEEE-ECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf 87459999-7682147899999999997389983999971789994
Q gi|254780767|r 2 NSLKIAVI-AGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQK 46 (383)
Q Consensus 2 ~~mki~i~-aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~ 46 (383)
++|||+.. ....||++.-..+ +.|++....+++|..+-||.-..
T Consensus 3 ~k~riLcLHG~g~n~~if~~q~-~~l~~~L~~~~ef~f~daP~~~~ 47 (210)
T pfam03959 3 KKLKILCLHGFGQSGEIFRAKT-GALRKLLKKGVELVYLDAPFPLA 47 (210)
T ss_pred CCCEEEEECCCCCCHHHHHHHH-HHHHHHHHCCCEEEEECCCCCCC
T ss_conf 7766998799997999999999-99999860474699707863468
No 305
>pfam06838 Alum_res Aluminium resistance protein. This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria.
Probab=45.34 E-value=19 Score=16.24 Aligned_cols=24 Identities=29% Similarity=0.634 Sum_probs=16.9
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECH
Q ss_conf 999999986100128886898511
Q gi|254780767|r 74 IFRINQTVELIVSSKPDVLLIVDN 97 (383)
Q Consensus 74 ~~~~~~~~~~i~~~~Pd~vi~iD~ 97 (383)
...++++.+.+++.+||++|+||.
T Consensus 175 i~~I~~~i~~vk~~~pd~ivfVDN 198 (405)
T pfam06838 175 IAEIKEMIKFVKEINPNVIVFVDN 198 (405)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 999999999999768993999978
No 306
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=45.32 E-value=22 Score=15.85 Aligned_cols=30 Identities=27% Similarity=0.311 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECHHHH
Q ss_conf 999999999986100128886898511776
Q gi|254780767|r 71 PQFIFRINQTVELIVSSKPDVLLIVDNPDF 100 (383)
Q Consensus 71 ~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF 100 (383)
..++..+..+.+++++.+||++|.|-.=.|
T Consensus 31 ~~~f~g~~~~r~~l~~~~PDv~viv~nDH~ 60 (277)
T cd07364 31 KPLFKGYQPARDWIKKNKPDVAIIVYNDHA 60 (277)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 999988899999999739998999815668
No 307
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=45.24 E-value=22 Score=15.84 Aligned_cols=95 Identities=11% Similarity=0.125 Sum_probs=51.9
Q ss_pred EEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEECCCCCC
Q ss_conf 68985117765799998663013463111100221100366355799999864015677422320025531476388211
Q gi|254780767|r 91 VLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQRLGGPPTTFVGHPLS 170 (383)
Q Consensus 91 ~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~~~~fVGHPl~ 170 (383)
-||.+-|.-|--.+++.+++. |+|++-. +.....+ +.-+++ |.++.| |.+-
T Consensus 402 ~VII~G~GR~Gq~var~L~~~--gi~~vvi---------D~d~~~V---------------~~~r~~-G~~v~y-GDat- 452 (602)
T PRK03659 402 QVIIVGFGRFGQVIGRLLMAN--KMRITVL---------ERDISAV---------------NLMRKY-GYKVYY-GDAT- 452 (602)
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCCEEEE---------ECCHHHH---------------HHHHHC-CCEEEE-ECCC-
T ss_conf 989978875689999999978--9998999---------7867999---------------999978-990897-5899-
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 2210013558889761876556505998538743012305111899987640273512620
Q gi|254780767|r 171 SSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSL 231 (383)
Q Consensus 171 d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i 231 (383)
+.+..+.-|.++.+-.|.-.|.... -.++++..++.+|++..+.
T Consensus 453 --------~~~vL~~AGi~~A~~vViai~d~~~---------~~~iv~~~r~~~P~l~I~a 496 (602)
T PRK03659 453 --------QLELLRAAGAEKAEAIVITCNEPED---------TMKLVELCQQHFPHLHILA 496 (602)
T ss_pred --------CHHHHHHCCCCCCCEEEEEECCHHH---------HHHHHHHHHHHCCCCEEEE
T ss_conf --------9999986790405889998298999---------9999999998786996999
No 308
>cd01823 SEST_like SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.
Probab=45.23 E-value=22 Score=15.84 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEEECCHHH
Q ss_conf 21478999999999973899839999717899
Q gi|254780767|r 13 ISGDLLAGDLIKSLKEMVSYPINLVGVGGPSL 44 (383)
Q Consensus 13 ~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m 44 (383)
.|.+-|+..+.+.|... ..++.+....|...
T Consensus 29 RS~~~yp~~~a~~l~~~-~~~~~~~aCsGA~~ 59 (259)
T cd01823 29 RSSNSYPTLLARALGDE-TLSFTDVACSGATT 59 (259)
T ss_pred CCCCCHHHHHHHHHCCC-CCEEEEEECCCCCC
T ss_conf 67446999999982888-75166763038622
No 309
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=45.13 E-value=22 Score=15.83 Aligned_cols=40 Identities=15% Similarity=0.314 Sum_probs=25.2
Q ss_pred CCCCCEEEEECHHHHHHHHHHHHHHHC-----CCCCCEEEE--CCCC
Q ss_conf 128886898511776579999866301-----346311110--0221
Q gi|254780767|r 86 SSKPDVLLIVDNPDFTHRVAKRVRKKM-----PNLPIINYV--CPSV 125 (383)
Q Consensus 86 ~~~Pd~vi~iD~pgFnl~lak~lkk~~-----~~ipvi~yv--~Pqv 125 (383)
+.+.+++|+--+.+-.+.++..+.+.+ .++|++... +|++
T Consensus 64 ~~~v~~iiG~~~S~~~~a~~~~~~~~~~~a~~~~vp~i~~~~~~~~l 110 (342)
T cd06329 64 DDGVRLVVQGNSSSVALALTEAVRKHNQRNPGKEVLYLNYASVAPAL 110 (342)
T ss_pred HCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
T ss_conf 76994998897858899989999985133112680699538777132
No 310
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=44.95 E-value=20 Score=16.22 Aligned_cols=36 Identities=14% Similarity=0.279 Sum_probs=22.9
Q ss_pred CCCCEEEEECHHHH--HHHHHHHHHHHCCCCCCEEEECCCCCCC
Q ss_conf 28886898511776--5799998663013463111100221100
Q gi|254780767|r 87 SKPDVLLIVDNPDF--THRVAKRVRKKMPNLPIINYVCPSVWAW 128 (383)
Q Consensus 87 ~~Pd~vi~iD~pgF--nl~lak~lkk~~~~ipvi~yv~PqvWAW 128 (383)
..+|+||. +||. +-+..++++++ |||++.+ +++.||
T Consensus 66 ~~~d~vV~--Sp~I~~~~p~~~~a~~~--gi~v~~~--~e~l~~ 103 (459)
T PRK00421 66 KGADVVVV--SSAIKPDNPELVAAREL--GIPVVRR--AEMLAE 103 (459)
T ss_pred CCCCEEEE--CCCCCCCCHHHHHHHHC--CCCEEEH--HHHHHH
T ss_conf 99999998--99859989999999987--9979889--999999
No 311
>pfam07014 Hs1pro-1_C Hs1pro-1 protein C-terminus. This family represents the C-terminus (approximately 270 residues) of a number of plant Hs1pro-1 proteins, which are believed to confer nematode resistance.
Probab=44.70 E-value=23 Score=15.79 Aligned_cols=11 Identities=18% Similarity=0.283 Sum_probs=5.2
Q ss_pred CEEEEEECCHH
Q ss_conf 83999971789
Q gi|254780767|r 33 PINLVGVGGPS 43 (383)
Q Consensus 33 ~~~~~giGG~~ 43 (383)
.+++..|+-|.
T Consensus 20 ~L~YD~Vc~P~ 30 (261)
T pfam07014 20 NLEYDAVCRPN 30 (261)
T ss_pred CCCCCCCCCHH
T ss_conf 54303544788
No 312
>KOG3349 consensus
Probab=44.68 E-value=23 Score=15.79 Aligned_cols=35 Identities=11% Similarity=0.181 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHCCCHHHHH-HHHHHCCCEEEEC
Q ss_conf 5203578876355233115668-8876275302540
Q gi|254780767|r 259 EQKKQVFMTCNAAMAASGTVIL-ELALCGIPVVSIY 293 (383)
Q Consensus 259 ~~~~~~l~~sd~ai~~SGTaTL-E~al~g~P~IV~Y 293 (383)
....+.++.||++|.-.|+-|- |.--.|.|.||+-
T Consensus 72 psl~e~I~~AdlVIsHAGaGS~letL~l~KPlivVv 107 (170)
T KOG3349 72 PSLTEDIRSADLVISHAGAGSCLETLRLGKPLIVVV 107 (170)
T ss_pred CCHHHHHHHCCEEEECCCCCHHHHHHHCCCCEEEEE
T ss_conf 417888753458874587420999997499779992
No 313
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=44.62 E-value=23 Score=15.78 Aligned_cols=80 Identities=19% Similarity=0.424 Sum_probs=45.5
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45999976821478999999999973899839999717899947880650444531101367466459999999999861
Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVEL 83 (383)
Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~ 83 (383)
|||+|..+ +-.+|..|.+.|. ++.++.+..... .|+++ ...+.+.
T Consensus 1 M~iLi~G~---~GqLG~~L~~~l~----~~~~v~a~~~~~---------~Ditd-------------------~~~v~~~ 45 (281)
T COG1091 1 MKILITGA---NGQLGTELRRALP----GEFEVIATDRAE---------LDITD-------------------PDAVLEV 45 (281)
T ss_pred CCEEEECC---CCHHHHHHHHHHC----CCCEEEECCCCC---------CCCCC-------------------HHHHHHH
T ss_conf 95899769---8767999999717----784399515765---------55568-------------------5899999
Q ss_pred CCCCCCCEEEE------EC----HHH----HH----HHHHHHHHHHCCCCCCEEE
Q ss_conf 00128886898------51----177----65----7999986630134631111
Q gi|254780767|r 84 IVSSKPDVLLI------VD----NPD----FT----HRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 84 i~~~~Pd~vi~------iD----~pg----Fn----l~lak~lkk~~~~ipvi~y 120 (383)
+++.+||+||= || -|. .| ..+|+.+++. |.++||+
T Consensus 46 i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~--ga~lVhi 98 (281)
T COG1091 46 IRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEV--GARLVHI 98 (281)
T ss_pred HHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--CCEEEEE
T ss_conf 9861999899873203654133898997776779999999999971--9769996
No 314
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=44.51 E-value=23 Score=15.77 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECHHHH
Q ss_conf 999999999986100128886898511776
Q gi|254780767|r 71 PQFIFRINQTVELIVSSKPDVLLIVDNPDF 100 (383)
Q Consensus 71 ~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF 100 (383)
..++..+..+.+++++.+||++|.|-.=.|
T Consensus 31 ~~~f~g~~~~r~~l~~~kPDVlViv~nDH~ 60 (284)
T PRK13366 31 QPVFKGYEFSKQWLKEEKPDVIFLVYNDHA 60 (284)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 999977799999999729998999806678
No 315
>PRK11752 putative glutathione S-transferase YghU; Provisional
Probab=44.51 E-value=6.2 Score=19.50 Aligned_cols=22 Identities=23% Similarity=0.649 Sum_probs=17.9
Q ss_pred EEEECCCCCCCCCCCHHHHHHH
Q ss_conf 1110022110036635579999
Q gi|254780767|r 118 INYVCPSVWAWREGRARKMCAY 139 (383)
Q Consensus 118 i~yv~PqvWAWr~~R~k~~~~~ 139 (383)
-.|++|.||.|.+.+.-++...
T Consensus 4 ~~y~~p~~w~~~~~~~~~~~~~ 25 (264)
T PRK11752 4 NTYQPPKVWTWDKSNGGAFANI 25 (264)
T ss_pred CCCCCCCCCCCCCCCCCCCCCC
T ss_conf 7877986410137888721345
No 316
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases; InterPro: IPR004507 This family contains flavoproteins, which are aromatic acid decarboxylases. An example is the Saccharomyces cerevisiae gene, PAD1 that encodes phenylacrylic acid decarboxylase. Mutations of this gene are viable and confer resistance to cinnamic acid. ; GO: 0016831 carboxy-lyase activity.
Probab=44.12 E-value=23 Score=15.73 Aligned_cols=141 Identities=17% Similarity=0.210 Sum_probs=74.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH----HHHCCCEEEECHHHCCEEEHH-------------H--
Q ss_conf 599997682147899999999997389983999971789----994788065044453110136-------------7--
Q gi|254780767|r 5 KIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPS----LQKEGLVSLFDFSELSVIGIM-------------Q-- 65 (383)
Q Consensus 5 ki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~----m~~~G~~~~~~~~~l~v~G~~-------------e-- 65 (383)
||-+.=..+||-+||-||++.||+. ++|..-|=-+- |+.|-.=-..+.++|+.--+- .
T Consensus 1 ~ivVa~TGAsGvI~G~RLL~~Lk~~---GvE~~LviS~~A~~tiK~Etd~~~~~v~~LAT~~Y~~~D~~a~i~SGSf~~D 77 (181)
T TIGR00421 1 KIVVAITGASGVIYGIRLLEVLKEL---GVEVHLVISKWAKKTIKYETDYDPGEVEELATKYYDEDDFAAPIASGSFKFD 77 (181)
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHC---CCEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCC
T ss_conf 9578622244899999999999867---9368786355899999885389988999996753261121100015786768
Q ss_pred -------HHHHHHHHH-----HHHHHHHHHCCCCCCCEEEEE-CHHHHHHHHHHHHHHHCCCC------CCEEEECCCCC
Q ss_conf -------466459999-----999999861001288868985-11776579999866301346------31111002211
Q gi|254780767|r 66 -------VVRHLPQFI-----FRINQTVELIVSSKPDVLLIV-DNPDFTHRVAKRVRKKMPNL------PIINYVCPSVW 126 (383)
Q Consensus 66 -------vl~~~~~~~-----~~~~~~~~~i~~~~Pd~vi~i-D~pgFnl~lak~lkk~~~~i------pvi~yv~PqvW 126 (383)
-.|.+..|. ..+-+.-+-..++|=++|+.. -.|==...|--.|+=...|. |=+|=
T Consensus 78 gm~VvPCSmKtLsaIa~G~a~NLitRAADV~LKErRkLvL~~REtPL~SiHLENmL~L~~~G~IIlPP~PaFY~------ 151 (181)
T TIGR00421 78 GMVVVPCSMKTLSAIANGYAENLITRAADVALKERRKLVLVPRETPLNSIHLENMLRLSRMGAIILPPVPAFYN------ 151 (181)
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCC------
T ss_conf 26886485678999985110556888975542205424640367887515489999998279253279554447------
Q ss_pred CCCCCCHHHHH-HHHHHHCCCCCCCHHHHHC
Q ss_conf 00366355799-9998640156774223200
Q gi|254780767|r 127 AWREGRARKMC-AYINQVISILPFEKEVMQR 156 (383)
Q Consensus 127 AWr~~R~k~~~-~~~d~~~~ifpFE~~~f~k 156 (383)
|++.+..+. ..+-+++=+|=-|.+.|+|
T Consensus 152 --rPkS~~Dl~~~~VgR~LD~lGI~~d~f~R 180 (181)
T TIGR00421 152 --RPKSVEDLIDFIVGRVLDQLGIENDLFRR 180 (181)
T ss_pred --CCCCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf --89887889867798777762443788889
No 317
>TIGR00863 P2X cation transporter protein; InterPro: IPR001429 P2X purinoceptors are cell membrane ion channels, gated by adenosine 5'-triphosphate (ATP) and other nucleotides; they have been found to be widely expressed on mammalian cells, and, by means of their functional properties, can be differentiated into three sub-groups. The first group is almost equally well activated by ATP and its analogue alphabetamethyleneATP, whereas, the second group is not activated by the latter compound. A third type of receptor (also called P2Z) is distinguished by the fact that repeated or prolonged agonist application leads to the opening of much larger pores, allowing large molecules to traverse the cell membrane. This increased permeability rapidly leads to cell death, and lysis. Molecular cloning studies have identified seven P2X receptor subtypes, designated P2X1-P2X7. These receptors are proteins that share 35-48% amino acid identity, and possess two putative transmembrane (TM) domains, separated by a long (~270 residues) intervening sequence, which is thought to form an extracellular loop. Around 1/4 of the residues within the loop are invariant between the cloned subtypes, including 10 characteristic cysteines. Studies of the functional properties of heterologously expressed P2X receptors, together with the examination of their distribution in native tissues, suggests they likely occur as both homo- and heteromultimers in vivo , . This entry represents all P2X purinoreceptor subtypes.; GO: 0004872 receptor activity, 0005216 ion channel activity, 0005524 ATP binding, 0006811 ion transport, 0016020 membrane.
Probab=44.11 E-value=3.5 Score=21.19 Aligned_cols=18 Identities=11% Similarity=0.433 Sum_probs=11.3
Q ss_pred HHHHHHHCCCCCEEEEEC
Q ss_conf 999996048885055205
Q gi|254780767|r 241 VRCIVSKWDISPEIIIDK 258 (383)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~ 258 (383)
.+..++.+++..+|++..
T Consensus 313 ~RtL~KaYGIRFDvlV~G 330 (377)
T TIGR00863 313 TRTLLKAYGIRFDVLVTG 330 (377)
T ss_pred EEEEEEECCEEEEEEEEC
T ss_conf 124555404067688507
No 318
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=43.37 E-value=16 Score=16.85 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=15.2
Q ss_pred HCCCCCCCEEEEECHHHHHH--------HHHHHHHHHCCCCCCE
Q ss_conf 10012888689851177657--------9999866301346311
Q gi|254780767|r 83 LIVSSKPDVLLIVDNPDFTH--------RVAKRVRKKMPNLPII 118 (383)
Q Consensus 83 ~i~~~~Pd~vi~iD~pgFnl--------~lak~lkk~~~~ipvi 118 (383)
.+...+||+||-==..|.|+ -++..+-....|||=|
T Consensus 82 ~l~~~~pDLVvSGIN~G~NlG~dv~ySGTVgAA~Ea~l~GiPsI 125 (253)
T PRK13933 82 KLLPDNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSI 125 (253)
T ss_pred HHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 21589999999788177478838230678899999987499828
No 319
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=43.25 E-value=24 Score=15.64 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=24.0
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCC
Q ss_conf 88850552055203578876355233115668887627530254057741
Q gi|254780767|r 249 DISPEIIIDKEQKKQVFMTCNAAMAASGTVILELALCGIPVVSIYKSEWI 298 (383)
Q Consensus 249 ~~~~~i~~~~~~~~~~l~~sd~ai~~SGTaTLE~al~g~P~IV~Yk~~~l 298 (383)
+..+++++..+..++..+ -.|+..+|+|.|-+-.|+--
T Consensus 154 ~~~Pd~l~ViDp~~e~iA------------v~EA~klgIPVvAlvDTn~d 191 (252)
T COG0052 154 KGLPDVLFVIDPRKEKIA------------VKEANKLGIPVVALVDTNCD 191 (252)
T ss_pred CCCCCEEEEECCCHHHHH------------HHHHHHCCCCEEEEECCCCC
T ss_conf 679998999688176899------------99999759998998418999
No 320
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=42.86 E-value=24 Score=15.60 Aligned_cols=77 Identities=22% Similarity=0.231 Sum_probs=46.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 59999768214789999999999738998399997178999478806504445311013674664599999999998610
Q gi|254780767|r 5 KIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELI 84 (383)
Q Consensus 5 ki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i 84 (383)
=+++++|..|.-++..++-++.+++ +-++++..+|....+..--..-| |+-.+| |..+..++++.+..
T Consensus 4 ILLvCaaGMSTSmlv~km~~~A~~~-G~dveI~Av~~~e~~~~i~~~~y---Dv~Llg--------PQVr~~~~~~k~~a 71 (104)
T PRK09590 4 ALIICAAGMSSSLMAKKTTEFLKGK-GKDIEVDAISATEGGKAIAAAAF---DLYLVS--------PQTKMYFKQFEEAG 71 (104)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHC-CCCEEEEEEEHHHHHHHHCCCCC---CEEEEC--------HHHHHHHHHHHHHH
T ss_conf 9999689987999999999999976-98369998488898876322688---789988--------76887899999999
Q ss_pred CC-CCCCEEE
Q ss_conf 01-2888689
Q gi|254780767|r 85 VS-SKPDVLL 93 (383)
Q Consensus 85 ~~-~~Pd~vi 93 (383)
.+ .+|=.+|
T Consensus 72 ~~~giPv~vI 81 (104)
T PRK09590 72 SKAGKPVVQI 81 (104)
T ss_pred HHCCCCEEEE
T ss_conf 8729977887
No 321
>PRK05693 short chain dehydrogenase; Provisional
Probab=42.84 E-value=24 Score=15.60 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=25.1
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 4599997682147899999999997389983999971
Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG 40 (383)
Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG 40 (383)
||+.+++|-.|| .|-.+.++|.++ +.++++.+
T Consensus 1 MKvvlITGassG--IG~alA~~la~~---G~~V~~~~ 32 (274)
T PRK05693 1 MPVVLITGCSSG--IGRALADAFKAA---GYEVWATA 32 (274)
T ss_pred CCEEEECCCCCH--HHHHHHHHHHHC---CCEEEEEE
T ss_conf 998999488858--999999999987---99999997
No 322
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=42.75 E-value=14 Score=17.08 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=18.7
Q ss_pred HHCCCCCCCEEEEECHHHHHH--------HHHHHHHHHCCCCCCEEE
Q ss_conf 610012888689851177657--------999986630134631111
Q gi|254780767|r 82 ELIVSSKPDVLLIVDNPDFTH--------RVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 82 ~~i~~~~Pd~vi~iD~pgFnl--------~lak~lkk~~~~ipvi~y 120 (383)
+.+...+||+||-==..|.|+ -++..+-....|||=|=+
T Consensus 80 ~~l~~~~pDLVvSGIN~G~NlG~dv~YSGTVgAA~Eg~l~GipsIAv 126 (255)
T PRK13935 80 DVIMKKKPDLVISGINRGPNLGTDVLYSGTVSGALEGAIAGVPSIAI 126 (255)
T ss_pred HHHCCCCCCEEEECCCCCCCCCCCEEECCHHHHHHHHHHCCCCEEEE
T ss_conf 64058999889968748877771377200367789897549986999
No 323
>pfam02670 DXP_reductoisom 1-deoxy-D-xylulose 5-phosphate reductoisomerase. This is a family of 1-deoxy-D-xylulose 5-phosphate reductoisomerases. This enzyme catalyses the formation of 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose-5-phosphate in the presence of NADPH. This reaction is part of the terpenoid biosynthesis pathway.
Probab=42.56 E-value=23 Score=15.72 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=18.5
Q ss_pred HHHHHHHCCCCCEEEEECCCCHHHHHH--HHHHHC-CCHHHHHHHHH
Q ss_conf 999996048885055205520357887--635523-31156688876
Q gi|254780767|r 241 VRCIVSKWDISPEIIIDKEQKKQVFMT--CNAAMA-ASGTVILELAL 284 (383)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~~~~~l~~--sd~ai~-~SGTaTLE~al 284 (383)
.+..+.....+.++....+...++.+. +|.+++ .||++-|+.++
T Consensus 62 l~~~~~~~~~~~~i~~g~~~l~~~~~~~~~D~vi~AIsG~aGL~pt~ 108 (129)
T pfam02670 62 LKEALAGAGLKTEVLAGEEGLCELAALPEADIVVNAIVGAAGLLPTL 108 (129)
T ss_pred HHHHCCCCCCCCEEEECHHHHHHHHCCCCCCEEEEECCCCCHHHHHH
T ss_conf 99863247887379878899999970778899998156501399999
No 324
>PRK13529 malate dehydrogenase; Provisional
Probab=42.53 E-value=23 Score=15.82 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=12.5
Q ss_pred CCCCCCCCCCHH------HHHHHHHHHCCCCC
Q ss_conf 221100366355------79999986401567
Q gi|254780767|r 123 PSVWAWREGRAR------KMCAYINQVISILP 148 (383)
Q Consensus 123 PqvWAWr~~R~k------~~~~~~d~~~~ifp 148 (383)
|..--||+.|++ .+.+++..+...||
T Consensus 208 PlYlG~r~~R~~g~~Y~~fidefv~av~~~fP 239 (563)
T PRK13529 208 PLYLGWRHPRITGEEYDEFVDEFVQAVKRRFP 239 (563)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 63357678888768899999999999999789
No 325
>PRK10949 protease 4; Provisional
Probab=42.53 E-value=25 Score=15.57 Aligned_cols=20 Identities=15% Similarity=0.418 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHCCCCEEEEEE
Q ss_conf 999999999738998399997
Q gi|254780767|r 19 AGDLIKSLKEMVSYPINLVGV 39 (383)
Q Consensus 19 ~a~li~~Lk~~~~~~~~~~gi 39 (383)
-..++++|++... |=++.|+
T Consensus 97 L~Div~aI~~Aa~-D~rI~gi 116 (618)
T PRK10949 97 LFDIVNTIRQAKD-DRNITGI 116 (618)
T ss_pred HHHHHHHHHHHCC-CCCEEEE
T ss_conf 9999999998514-9982599
No 326
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=42.33 E-value=25 Score=15.55 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=23.3
Q ss_pred CCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEC-CCC
Q ss_conf 88868985117765799998663013463111100-221
Q gi|254780767|r 88 KPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVC-PSV 125 (383)
Q Consensus 88 ~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~-Pqv 125 (383)
--|.||+.+.-|---++...++...++++-.||+. ||-
T Consensus 88 ~~d~vv~~~tCD~kkkm~e~~~~~~p~~~~~~~~~lP~~ 126 (377)
T TIGR03190 88 YAEGVTLTQSCIQYRQTFGSWRQHVPTVKWDYYVPMPNE 126 (377)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEEECCCCC
T ss_conf 211455137977889999999974787661168718997
No 327
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=41.89 E-value=25 Score=15.51 Aligned_cols=93 Identities=18% Similarity=0.292 Sum_probs=39.3
Q ss_pred HHHHHHHHC--CCHHHHH-HHHHHCCCEEEECCCCCCEEE----EEECCCCCCEEEEHHH---CCCCCC--------CHH
Q ss_conf 887635523--3115668-887627530254057741000----0102467610230244---078426--------124
Q gi|254780767|r 265 FMTCNAAMA--ASGTVIL-ELALCGIPVVSIYKSEWIVNF----FIFYIKTWTCALPNLI---VDYPLV--------PEY 326 (383)
Q Consensus 265 l~~sd~ai~--~SGTaTL-E~al~g~P~IV~Yk~~~lt~~----i~~lik~~~i~LpNii---~~~~iv--------PEl 326 (383)
|+.+-+++. +.=||.| .+.-.+.|.|++ =|+|-|.- +..+=.+ .++=|.-+ +|.+|+ ||=
T Consensus 171 MQEg~lSLMQMaktsaAl~~l~ea~lpyIsV-Lt~PTtGGVsASfA~lGDi-~iAEP~AlIGFAGpRVIEQTire~LPeg 248 (294)
T COG0777 171 MQEGILSLMQMAKTSAALKRLSEAGLPYISV-LTDPTTGGVSASFAMLGDI-IIAEPGALIGFAGPRVIEQTIREKLPEG 248 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-ECCCCCCCHHHHHHHCCCE-EECCCCCCCCCCCCHHHHHHHCCCCCCC
T ss_conf 7688999999999999999998759966999-5589866646767752674-6517630001576324465644316862
Q ss_pred HCCCCCHHHHHHH--HHHHHCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 2054898999999--999844989999999999999998389
Q gi|254780767|r 327 FNSMIRSEALVRW--IERLSQDTLQRRAMLHGFENLWDRMNT 366 (383)
Q Consensus 327 iQ~~~~~~~i~~~--~~~ll~d~~~r~~~~~~~~~~~~~Lg~ 366 (383)
+| ++|.+.+. ++.+.. |.++...+..+...+..
T Consensus 249 fQ---~aEfLlehG~iD~iv~----R~elr~tla~ll~~~~~ 283 (294)
T COG0777 249 FQ---TAEFLLEHGMIDMIVH----RDELRTTLASLLAKLTP 283 (294)
T ss_pred HH---HHHHHHHCCCCCEEEC----HHHHHHHHHHHHHHHCC
T ss_conf 34---6899997587305633----58899999999997378
No 328
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=41.81 E-value=25 Score=15.50 Aligned_cols=22 Identities=23% Similarity=0.236 Sum_probs=10.7
Q ss_pred CHHHHHHHHHHCCCCCEEEECC
Q ss_conf 1189998764027351262016
Q gi|254780767|r 212 FFESAVASLVKRNPFFRFSLVT 233 (383)
Q Consensus 212 ~~l~~~~~l~~~~~~~~~~i~~ 233 (383)
-|-..+.++...+|+..|....
T Consensus 176 Dfs~~l~ki~~a~pD~v~~~~~ 197 (348)
T cd06355 176 DFQSIINKIKAAKPDVVVSTVN 197 (348)
T ss_pred CHHHHHHHHHHCCCCEEEEECC
T ss_conf 6799999999769999999476
No 329
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=41.74 E-value=12 Score=17.68 Aligned_cols=38 Identities=21% Similarity=0.409 Sum_probs=24.2
Q ss_pred HHCCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCEEE
Q ss_conf 6100128886898-5117765-7999986630134631111
Q gi|254780767|r 82 ELIVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 82 ~~i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi~y 120 (383)
..+..++||++|+ +.-||.+ +.+++++|+. ..+|+|..
T Consensus 39 ~~~~~~~~DlviLDi~lP~~dG~~l~~~iR~~-~~~pII~l 78 (225)
T PRK10529 39 LEAATRKPDLIILDLGLPDGDGIEFIRDLRQW-SAIPVIVL 78 (225)
T ss_pred HHHHHCCCCEEEEECCCCCCCCCCCEEEEECC-CCCCEEEE
T ss_conf 98611799899980788888876331000127-99878999
No 330
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=41.50 E-value=25 Score=15.47 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 4789999999999738998399997178
Q gi|254780767|r 15 GDLLAGDLIKSLKEMVSYPINLVGVGGP 42 (383)
Q Consensus 15 GD~~~a~li~~Lk~~~~~~~~~~giGG~ 42 (383)
|-.+.+.+.|.| +.++-=.|++|.
T Consensus 19 ~~a~~~~l~r~l----g~~viNlG~sG~ 42 (177)
T cd01844 19 GMAWTAILARRL----GLEVINLGFSGN 42 (177)
T ss_pred CCCHHHHHHHHC----CCCEEECCCCCC
T ss_conf 441699999854----997771466754
No 331
>pfam11633 Nsp3 Replicase polyprotein 1ab. This family of proteins represents Nsp3, the product of ORF1a in group 2 coronavirus.This is the largest replicase subunit.
Probab=41.30 E-value=26 Score=15.45 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=22.8
Q ss_pred HHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHC
Q ss_conf 999986100128886898511776579999866301
Q gi|254780767|r 77 INQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKM 112 (383)
Q Consensus 77 ~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~ 112 (383)
++.++++.++..--+.|++|||.| .|-||+++
T Consensus 25 ~r~mv~hake~g~l~pIc~Dy~A~----~k~Lkrkg 56 (142)
T pfam11633 25 FRAMVRHAKETGLLCPICIDYPAF----MKVLKRKG 56 (142)
T ss_pred HHHHHHHHHHCCCEEEEEECCHHH----HHHHHHCC
T ss_conf 899998666328355799652889----99998548
No 332
>TIGR00087 surE 5'/3'-nucleotidase SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response . E. coli cells with mutations in the surE gene survive poorly in stationary phase . The structure of SurE homologues have been determined from Thermotoga maritima and the archaea Pyrobaculum aerophilum . The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity.
Probab=41.23 E-value=16 Score=16.88 Aligned_cols=93 Identities=17% Similarity=0.271 Sum_probs=49.2
Q ss_pred EEEEECCCCCCHHHHC---CCHHHHHHHHHHCCCCCEEEECCCCCH--HHHHHHHHHHC--CCCCEEEEECCCCHHHHHH
Q ss_conf 5998538743012305---111899987640273512620166336--88999999604--8885055205520357887
Q gi|254780767|r 195 ILLLPGSRAQEIYKIL---PFFESAVASLVKRNPFFRFSLVTVSSQ--ENLVRCIVSKW--DISPEIIIDKEQKKQVFMT 267 (383)
Q Consensus 195 I~llPGSR~~EI~~~l---P~~l~~~~~l~~~~~~~~~~i~~~~~~--~~~~~~~~~~~--~~~~~i~~~~~~~~~~l~~ 267 (383)
+.|.-+=|..+++-.- |..+.+ ++.+.. .-.+.+-.+|.- .--+...+.+. .+.+++++..-+.-.=|..
T Consensus 72 ~Tl~~p~r~~~~~~~~~~~~~vLna--ei~~~~-~~~~~~dGTP~DcV~lG~~~~~~~~~nnitpDLV~SGiN~G~NlG~ 148 (326)
T TIGR00087 72 LTLFEPIRVEQVKVENGKLGYVLNA--EIDKDD-IHIYAVDGTPTDCVILGIHELMPEVHNNITPDLVISGINLGENLGA 148 (326)
T ss_pred CCHHHCCEEEEEECCCCCCCEEEEC--CCCCCC-CEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCH
T ss_conf 2520111221431368888703314--388774-3589971886899999999870431234453258806668886773
Q ss_pred HHHHHCCCHHHHH--HHHHHC-CCEEEE
Q ss_conf 6355233115668--887627-530254
Q gi|254780767|r 268 CNAAMAASGTVIL--ELALCG-IPVVSI 292 (383)
Q Consensus 268 sd~ai~~SGTaTL--E~al~g-~P~IV~ 292 (383)
..++.|||+.- |++..| +|.|-+
T Consensus 149 --~~~~~SGTvgAA~E~~~~Gn~paIA~ 174 (326)
T TIGR00087 149 --EDVTYSGTVGAAMEAAIHGNVPAIAI 174 (326)
T ss_pred --HHHHHCCHHHHHHHHHHHCCCCCEEE
T ss_conf --33310253899888665178640464
No 333
>pfam04227 Indigoidine_A Indigoidine synthase A like protein. Indigoidine is a blue pigment synthesized by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown.
Probab=40.67 E-value=22 Score=15.84 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHCCCH-------HHHHHHH-HHCCCEEEECCCCCCEEEEEE--CCCCCC
Q ss_conf 357887635523311-------5668887-627530254057741000010--246761
Q gi|254780767|r 262 KQVFMTCNAAMAASG-------TVILELA-LCGIPVVSIYKSEWIVNFFIF--YIKTWT 310 (383)
Q Consensus 262 ~~~l~~sd~ai~~SG-------TaTLE~a-l~g~P~IV~Yk~~~lt~~i~~--lik~~~ 310 (383)
...|+....+++||| -.|||.. -+|+| |+.|+++-+-.|+.+ -+++++
T Consensus 136 L~eL~~tpv~VVcaG~KsILDi~~TlE~LET~GV~-V~gy~td~fPaFy~~~Sg~~~~~ 193 (293)
T pfam04227 136 LTELARTPVAVVCAGAKSILDIPKTLEYLETQGVP-VIGYGTDEFPAFYSRDSGFKVPY 193 (293)
T ss_pred HHHHHCCCEEEEECCCHHHHCCHHHHHHHHHCCCE-EEEECCCCCCCEEECCCCCCCCC
T ss_conf 78881597599942607650544689999975943-89745876564230588998866
No 334
>PRK09814 hypothetical protein; Provisional
Probab=40.62 E-value=26 Score=15.38 Aligned_cols=109 Identities=13% Similarity=0.230 Sum_probs=59.3
Q ss_pred HHCCCCCCCEEEEECHH-----HHHHHHHHHHHHHCCCCCCEEEEC---CCCCC----CCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 61001288868985117-----765799998663013463111100---22110----0366355799999864015677
Q gi|254780767|r 82 ELIVSSKPDVLLIVDNP-----DFTHRVAKRVRKKMPNLPIINYVC---PSVWA----WREGRARKMCAYINQVISILPF 149 (383)
Q Consensus 82 ~~i~~~~Pd~vi~iD~p-----gFnl~lak~lkk~~~~ipvi~yv~---PqvWA----Wr~~R~k~~~~~~d~~~~ifpF 149 (383)
..+..-+..-+|++-|| .|...+.+++|++ +++++-+|- |==.. +-..+-..+-..+|.+++-=+.
T Consensus 57 ~i~~~l~~gDivi~QyP~~~~~~~~~~l~~~lk~~--~~K~i~~IHDie~LR~~~~~~~~~~~ei~~ln~aD~iIvhn~~ 134 (337)
T PRK09814 57 GILASLNRGDIVVFQYPTYNGFEFDLLFIDKLKKK--QIKIIILIHDIEPLRFGKSNYYLMKEEIDMLNLSDVVIVHNKK 134 (337)
T ss_pred HHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHCCCCCHHHHHHHHHHHHHCCEEEECCHH
T ss_conf 99957799999999789870788999999999975--9879999776589865677703679999998528999979999
Q ss_pred CHHHHHCCCCCCE-EECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 4223200255314-7638821122100135588897618765565059985387
Q gi|254780767|r 150 EKEVMQRLGGPPT-TFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSR 202 (383)
Q Consensus 150 E~~~f~k~~~~~~-~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR 202 (383)
-.+|+.+ +|+++ ..|-=.+.|........ .++...-..+.|+=
T Consensus 135 M~~~L~~-~G~~~~kiv~l~ifDYl~~~~~~---------~~~~~k~I~fAGNL 178 (337)
T PRK09814 135 MTDWLVE-EGVTVDKIIDQEIFDYLVDIDLE---------TPSFQKKIIFAGNL 178 (337)
T ss_pred HHHHHHH-CCCCCCCEEEECCCCCCCCCCCC---------CCCCCCEEEEECCH
T ss_conf 9999997-79986864785787758875556---------65677439981672
No 335
>PRK06182 short chain dehydrogenase; Validated
Probab=40.52 E-value=26 Score=15.37 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=25.6
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 9874599997682147899999999997389983999971
Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG 40 (383)
Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG 40 (383)
|++ |+.+++|-.|| .|..+.+.|-++ +..+++.+
T Consensus 1 mk~-Kv~lITGassG--IG~a~a~~la~~---G~~V~~~~ 34 (273)
T PRK06182 1 MKK-KVALVTGASSG--IGKATARKLIAE---GFTVYGAA 34 (273)
T ss_pred CCC-CEEEEECCCHH--HHHHHHHHHHHC---CCEEEEEE
T ss_conf 946-98999063209--999999999987---99899997
No 336
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=40.33 E-value=18 Score=16.38 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=15.4
Q ss_pred CCCCCEEEEECHHHHHH---------HHHHHHHHHCCCCCCEE
Q ss_conf 12888689851177657---------99998663013463111
Q gi|254780767|r 86 SSKPDVLLIVDNPDFTH---------RVAKRVRKKMPNLPIIN 119 (383)
Q Consensus 86 ~~~Pd~vi~iD~pgFnl---------~lak~lkk~~~~ipvi~ 119 (383)
..+||+||-==.-|.|+ -++..+-....|||=|=
T Consensus 82 ~~~PDLVvSGIN~G~NlG~dvi~ySGTV~AA~Eg~~~GiPsIA 124 (266)
T PRK13934 82 GRKYDLVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPAVA 124 (266)
T ss_pred CCCCCEEEECCCCCCCCCCCCEECCHHHHHHHHHHHCCCCEEE
T ss_conf 7898889967757886672401514588999999856998599
No 337
>KOG3946 consensus
Probab=40.30 E-value=13 Score=17.38 Aligned_cols=12 Identities=0% Similarity=0.335 Sum_probs=5.7
Q ss_pred HHHHHHHHHHCC
Q ss_conf 579999986401
Q gi|254780767|r 134 RKMCAYINQVIS 145 (383)
Q Consensus 134 k~~~~~~d~~~~ 145 (383)
..+++..|+.+|
T Consensus 150 l~laq~l~~~~~ 161 (338)
T KOG3946 150 LNLAQALDKILC 161 (338)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999874
No 338
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; InterPro: IPR014008 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiT subunit of precorrin-6Y C5,15-methyltransferase (2.1.1.132 from EC) from the anaerobic pathway, a bifunctional enzyme that catalyses two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. In the anaerobic pathway, two enzymes are required to produce precorrin-8X: CbiE and CbiT, which can be fused as CbiET (sometimes called CobL) . In the aerobic pathway, the bifunctional enzyme is CobL .; GO: 0008276 protein methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=40.22 E-value=13 Score=17.30 Aligned_cols=69 Identities=22% Similarity=0.146 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHCCCEEEECCCCCCEEEEEECC--CCCCE-EEEHH-HCCCCCCCHHHCCCCCHH-HHHHHHHH
Q ss_conf 3311566888762753025405774100001024--67610-23024-407842612420548989-99999999
Q gi|254780767|r 273 AASGTVILELALCGIPVVSIYKSEWIVNFFIFYI--KTWTC-ALPNL-IVDYPLVPEYFNSMIRSE-ALVRWIER 342 (383)
Q Consensus 273 ~~SGTaTLE~al~g~P~IV~Yk~~~lt~~i~~li--k~~~i-~LpNi-i~~~~ivPEliQ~~~~~~-~i~~~~~~ 342 (383)
+.|||+|+|+|.+-=+..-+|-.--=-..+ .++ +.... ...|+ |...++.|+++..++.++ ....+.+.
T Consensus 29 aGtGS~~iE~~~~~p~~g~v~aiEr~~~~~-~~~~~N~~~~c~~~~~~i~~g~ap~~~~~~~~~~~~~~~~~~Da 102 (135)
T TIGR02469 29 AGTGSVTIEAARLVPNSGRVYAIERNPEAL-RLIERNLRRFCGVSNIVIVEGDAPEELLNSDAPEDSAKLPEPDA 102 (135)
T ss_pred CCCCHHHHHHHHHCCCCCEEEEEECCHHHH-HHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHCCCCCCCE
T ss_conf 574838999997359860799985376898-79999999828999632563556843336777710058874688
No 339
>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP). This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=40.13 E-value=27 Score=15.33 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECHHHHH
Q ss_conf 9999999999861001288868985117765
Q gi|254780767|r 71 PQFIFRINQTVELIVSSKPDVLLIVDNPDFT 101 (383)
Q Consensus 71 ~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFn 101 (383)
..+...+..+.+++++.+||++|.|-.=.||
T Consensus 29 ~~v~~a~~~~r~~l~~~~PDvvVi~~~DH~~ 59 (329)
T cd07369 29 ARTEEATLKLGRTLTAARPDVIIAFLDDHFE 59 (329)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
T ss_conf 9999999999999997199989998644776
No 340
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=40.09 E-value=27 Score=15.33 Aligned_cols=48 Identities=25% Similarity=0.448 Sum_probs=31.3
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC--CHHHHH-CCCEEE----ECHHH
Q ss_conf 4599997682147899999999997389983999971--789994-788065----04445
Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG--GPSLQK-EGLVSL----FDFSE 57 (383)
Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG--G~~m~~-~G~~~~----~~~~~ 57 (383)
|||-|++ +||-. |+++.++.+++ +.+..++- -.+|.+ .|+..+ ||.+.
T Consensus 1 mKIaiIg--AsG~~-Gs~i~~EA~~R---GHeVTAivRn~~K~~~~~~~~i~q~Difd~~~ 55 (211)
T COG2910 1 MKIAIIG--ASGKA-GSRILKEALKR---GHEVTAIVRNASKLAARQGVTILQKDIFDLTS 55 (211)
T ss_pred CEEEEEE--CCCHH-HHHHHHHHHHC---CCEEEEEEECHHHCCCCCCCEEECCCCCCHHH
T ss_conf 9078995--37456-79999999867---98048998076766522353020002227456
No 341
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=39.74 E-value=27 Score=15.29 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=20.7
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 899987640273512620166336889999996
Q gi|254780767|r 214 ESAVASLVKRNPFFRFSLVTVSSQENLVRCIVS 246 (383)
Q Consensus 214 l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 246 (383)
+++.+.+.+.+|+.++++.+.......+...+.
T Consensus 62 ~e~~~~l~~~~p~~~vvvlt~~~~~~~v~~~l~ 94 (211)
T COG2197 62 LEALKQLRARGPDIKVVVLTAHDDPAYVIRALR 94 (211)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH
T ss_conf 999999998689972999967789899999997
No 342
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=39.66 E-value=27 Score=15.29 Aligned_cols=88 Identities=15% Similarity=0.325 Sum_probs=47.1
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC--CHHHHHCCCEEE-ECHHHCCEEEHHHHHHHHHHHHHHHHH
Q ss_conf 74599997682147899999999997389983999971--789994788065-044453110136746645999999999
Q gi|254780767|r 3 SLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG--GPSLQKEGLVSL-FDFSELSVIGIMQVVRHLPQFIFRINQ 79 (383)
Q Consensus 3 ~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG--G~~m~~~G~~~~-~~~~~l~v~G~~evl~~~~~~~~~~~~ 79 (383)
+|||+|+....--+. |..+|++ .+ ...+...| ++.|...+-+.. .+.+ -+..
T Consensus 2 ~MkVLViGsGGREHA----la~kl~~-s~-~~~~~~~g~gn~g~~~~~~~~~~~~~~-------------------d~~~ 56 (435)
T PRK06395 2 TMKVMLVGSGGREDA----IARAIKR-SG-AILFSVIGHENPSIKKLSKKYLFYDEK-------------------DYDL 56 (435)
T ss_pred CCEEEEECCCHHHHH----HHHHHHC-CC-CCEEEEECCCCHHHHHHCCCCCCCCCC-------------------CHHH
T ss_conf 877999887889999----9999855-98-844999899967877623234656856-------------------9999
Q ss_pred HHHHCCCCCCCEEEE-ECHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 986100128886898-511776579999866301346311
Q gi|254780767|r 80 TVELIVSSKPDVLLI-VDNPDFTHRVAKRVRKKMPNLPII 118 (383)
Q Consensus 80 ~~~~i~~~~Pd~vi~-iD~pgFnl~lak~lkk~~~~ipvi 118 (383)
+.++++++++|+||. -..| .-.-++-.+++. |+|++
T Consensus 57 i~~~a~~~~idLvvvGPE~p-L~~Gi~D~l~~~--gi~vF 93 (435)
T PRK06395 57 IEDFALKNNVDIVFVGPDPV-LATPLVNNLLKR--GIKVA 93 (435)
T ss_pred HHHHHHHCCCCEEEECCCHH-HHCCHHHHHHHC--CCCEE
T ss_conf 99999984999999897678-866145599768--99466
No 343
>pfam02075 RuvC Crossover junction endodeoxyribonuclease RuvC.
Probab=39.58 E-value=27 Score=15.28 Aligned_cols=75 Identities=12% Similarity=0.240 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECHHHH--HHHHHHHH---------HHHCCCCCCEEEECCCCCCC--CCCCHH--H
Q ss_conf 999999999986100128886898511776--57999986---------63013463111100221100--366355--7
Q gi|254780767|r 71 PQFIFRINQTVELIVSSKPDVLLIVDNPDF--THRVAKRV---------RKKMPNLPIINYVCPSVWAW--REGRAR--K 135 (383)
Q Consensus 71 ~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF--nl~lak~l---------kk~~~~ipvi~yv~PqvWAW--r~~R~k--~ 135 (383)
-++.....++.+.|.+++||.+..= .+=| |.+-|-++ -....++|+..|-+-||+-. +.||+. .
T Consensus 40 ~RL~~I~~~l~~ii~~~~P~~~aiE-~~F~~~N~~ta~~lgqaRGvill~~~~~~i~v~ey~P~~VKk~itG~G~A~KeQ 118 (148)
T pfam02075 40 ERLLAIFDAVEEVLDTHQPNAVAIE-QVFFAKNVDSALKLAQARGVAILAAAERGISVFEYTPSQVKKAVTGNGSADKRQ 118 (148)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCHHH
T ss_conf 9999999999999996499867475-877712869999999999999999998079805788899888873798587999
Q ss_pred HHHHHHHHCCC
Q ss_conf 99999864015
Q gi|254780767|r 136 MCAYINQVISI 146 (383)
Q Consensus 136 ~~~~~d~~~~i 146 (383)
+...+..++-+
T Consensus 119 V~~mV~~ll~l 129 (148)
T pfam02075 119 VQHMVKRLLNL 129 (148)
T ss_pred HHHHHHHHHCC
T ss_conf 99999998098
No 344
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=39.49 E-value=27 Score=15.27 Aligned_cols=152 Identities=16% Similarity=0.284 Sum_probs=82.9
Q ss_pred HHHHHHCCCCCCCEEEEE-----------CHHHHHHHHHHHHHHHCCCCCCEEEECCCC-CCCCCCCHHHHHHHHHHHCC
Q ss_conf 999861001288868985-----------117765799998663013463111100221-10036635579999986401
Q gi|254780767|r 78 NQTVELIVSSKPDVLLIV-----------DNPDFTHRVAKRVRKKMPNLPIINYVCPSV-WAWREGRARKMCAYINQVIS 145 (383)
Q Consensus 78 ~~~~~~i~~~~Pd~vi~i-----------D~pgFnl~lak~lkk~~~~ipvi~yv~Pqv-WAWr~~R~k~~~~~~d~~~~ 145 (383)
++++..+++.+|+.+|++ |-- ++|+++.++ +++||+-|-++-+ -+--++ -....+.|+.
T Consensus 76 ~r~v~~i~~~r~p~~iFlvgtCpseVIk~DLe----~~A~rls~~-~~v~Vv~vs~sGiettFTQG----EDa~LaAlvp 146 (396)
T cd01979 76 DRVVTQIKRDRNPSVIFLIGSCTTEVIKMDLE----GAAPRLSAE-IGVPILVASASGLDYTFTQG----EDTVLAALVP 146 (396)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH----HHHHHHHHC-CCCEEEEEECCCCCCCHHHH----HHHHHHHHHH
T ss_conf 99999999748994799972585777752499----998875326-79559995268754757679----9999999986
Q ss_pred CCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHH---------HCCCHHHH
Q ss_conf 567742232002553147638821122100135588897618765565059985387430123---------05111899
Q gi|254780767|r 146 ILPFEKEVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYK---------ILPFFESA 216 (383)
Q Consensus 146 ifpFE~~~f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~---------~lP~~l~~ 216 (383)
..|-+. .. .-+..+||- +-|.+... -....+++|+. .+..||++|..|... .-|.+-++
T Consensus 147 ~~P~~~---~~--~~~LvlvGs-l~d~vedq--~~~ll~~lGI~----vv~~LP~~~~~eLp~vg~~t~v~l~qPfL~~T 214 (396)
T cd01979 147 RCPEKP---SP--ERSLVLVGS-LPDIVEDQ--LRRELEQLGIP----VVGFLPPRRYTDLPVIGPGTYVLGIQPFLSRT 214 (396)
T ss_pred HCCCCC---CC--CCCEEEEEE-CCCHHHHH--HHHHHHHCCCC----EEEECCCCCCCCCCCCCCCCEEEEECHHHHHH
T ss_conf 474323---78--886489970-58168999--99999976992----46775887611021358871899837179999
Q ss_pred HHHHHHCCC--CCEEEECCC-CCHHHHHHHHHHHCCC
Q ss_conf 987640273--512620166-3368899999960488
Q gi|254780767|r 217 VASLVKRNP--FFRFSLVTV-SSQENLVRCIVSKWDI 250 (383)
Q Consensus 217 ~~~l~~~~~--~~~~~i~~~-~~~~~~~~~~~~~~~~ 250 (383)
+..|.++.. -+...+|.. .+...+++.....++.
T Consensus 215 A~~L~~r~~~~~i~apFP~G~eGT~~Wl~aiA~~Fg~ 251 (396)
T cd01979 215 ATTLMRRRKCKLLSAPFPIGPDGTRAWLEAICSAFGI 251 (396)
T ss_pred HHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 9999970488620478987951499999999998398
No 345
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=38.73 E-value=26 Score=15.40 Aligned_cols=40 Identities=18% Similarity=0.380 Sum_probs=26.2
Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 8610012888689851177657999986630134631111002
Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCP 123 (383)
Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~P 123 (383)
.+.+..-+||+||.-++-+ .-.....+++. |||++.+-.+
T Consensus 51 ~E~il~l~PDLVi~~~~~~-~~~~~~~L~~~--gi~v~~~~~~ 90 (235)
T cd01149 51 AEGVLSLKPTLVIASDEAG-PPEALDQLRAA--GVPVVTVPST 90 (235)
T ss_pred HHHHHHCCCCEEEEECCCC-HHHHHHHHHHC--CCCEEECCCC
T ss_conf 9999737998899817768-39999999962--9907955898
No 346
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase; InterPro: IPR006362 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobM and CibF precorrin-4 C11-methyltransferase (2.1.1.133 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. In the aerobic pathway, CobM catalyses the methylation of precorrin-4 at C-11 to yield precorrin-5. The extruded acyl group is then removed in the subsequent step catalysed by CobF. In the anaerobic pathway, CibF catalyses the methylation of cobalt-precorrin-4 to cobalt-precoriin-5 . Nomenclature note: occasionally precorrin-4 C11-methyltransferase is one of two methyltransferases often referred to as precorrin-3 methylase (the other is precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, 2.1.1.131 from EC). ; GO: 0046026 precorrin-4 C11-methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=38.63 E-value=17 Score=16.55 Aligned_cols=164 Identities=16% Similarity=0.188 Sum_probs=87.4
Q ss_pred HHHHHHHHHCCCCCC-EE---EECCCCCCCCCCCHH-------HHHHHHHHHCCCCCCCHHHHHCCCCCCEEE--CCCCC
Q ss_conf 999986630134631-11---100221100366355-------799999864015677422320025531476--38821
Q gi|254780767|r 103 RVAKRVRKKMPNLPI-IN---YVCPSVWAWREGRAR-------KMCAYINQVISILPFEKEVMQRLGGPPTTF--VGHPL 169 (383)
Q Consensus 103 ~lak~lkk~~~~ipv-i~---yv~PqvWAWr~~R~k-------~~~~~~d~~~~ifpFE~~~f~k~~~~~~~f--VGHPl 169 (383)
|=.|.+- ..++ +| .|+|+.|||-+.-++ .+...+|.|.- .+. . |..|.- .|=|-
T Consensus 17 kG~~lle----~ADvilYAGSLV~~~~L~~~r~~Ae~~~sA~m~L~ei~~~m~~-------a~~-~-GK~VvRLHsGDPs 83 (252)
T TIGR01465 17 KGRKLLE----SADVILYAGSLVPPELLAHCRPGAEVVNSAAMSLEEIVDIMVD-------AVR-E-GKLVVRLHSGDPS 83 (252)
T ss_pred HHHHHHH----CCCEEEECCCCCHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH-------HHH-C-CCEEEEEECCCHH
T ss_conf 9998863----1997999687781789972789888860502698899999999-------986-6-9849998508755
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCC
Q ss_conf 12210013558889761876556505998538743012305111899987640273512620166336889999996048
Q gi|254780767|r 170 SSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWD 249 (383)
Q Consensus 170 ~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 249 (383)
.-- .....-...+..|++ .-+-|| .+-|..++-.|... +.+|-..- ..+-...+.-.
T Consensus 84 IYG--A~~EQ~~~L~~~gI~-----~e~vPG---------vSsf~AAAA~l~~E-----LT~P~vsQ--tvilTR~eG~R 140 (252)
T TIGR01465 84 IYG--AIAEQMQLLEALGIP-----YEVVPG---------VSSFFAAAAALGAE-----LTVPEVSQ--TVILTRAEGRR 140 (252)
T ss_pred HHH--HHHHHHHHHHHCCCC-----EEEECC---------CHHHHHHHHHHHCC-----CCCCCCEE--EEEEECCCCCC
T ss_conf 776--699999999867897-----798688---------73898999973001-----47884034--24467543435
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCHHHHHH----HH----HHCCCEEEECCCCCCEEEEEE
Q ss_conf 88505520552035788763552331156688----87----627530254057741000010
Q gi|254780767|r 250 ISPEIIIDKEQKKQVFMTCNAAMAASGTVILE----LA----LCGIPVVSIYKSEWIVNFFIF 304 (383)
Q Consensus 250 ~~~~i~~~~~~~~~~l~~sd~ai~~SGTaTLE----~a----l~g~P~IV~Yk~~~lt~~i~~ 304 (383)
. .+=..+.-..-+-++|.+||-.|.+..=+ +. --.||.+||||.+|--..|.|
T Consensus 141 t--PmPe~E~l~~lA~hgaTm~IfLs~~~~~~vv~~L~~~GY~~DTPV~vVyratWPDE~I~R 201 (252)
T TIGR01465 141 T--PMPEGEKLADLAKHGATMAIFLSAHIIDKVVKELIEGGYSEDTPVAVVYRATWPDEKIVR 201 (252)
T ss_pred C--CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEE
T ss_conf 4--577667899887412313567789999999999983776888878989851487565897
No 347
>PRK00346 surE stationary phase survival protein SurE; Provisional
Probab=38.48 E-value=19 Score=16.29 Aligned_cols=10 Identities=30% Similarity=0.720 Sum_probs=5.6
Q ss_pred CCCCCCEEEE
Q ss_conf 0128886898
Q gi|254780767|r 85 VSSKPDVLLI 94 (383)
Q Consensus 85 ~~~~Pd~vi~ 94 (383)
...+||+||-
T Consensus 79 ~~~~PDLVvS 88 (246)
T PRK00346 79 LDEKPDLVVS 88 (246)
T ss_pred CCCCCCEEEE
T ss_conf 4899878996
No 348
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase; InterPro: IPR012819 Sucrose occupies a central position in the metabolic pathways of all plants and plays a variety of roles including transport sugar, storage reserve, compatible solute, and signal compound . This compound is produced by the combined action of two enzymes, sucrose-phosphate synthase (2.4.1.14 from EC) and sucrose-phosphate phosphatase (3.1.3.24 from EC), via the intermediate sucrose 6-phosphate. Several studies have shown a positive correlation between sucrose-phosphate synthase activity and plant growth rate and yield in agronomically important plants, though direct proof of a causal link is lacking. This entry represents sucrose-phosphate synthase from plants, which is known to exist in multigene families in several species of both monocots and dicots. The enzyme contains an N-terminal domain glucosyltransferase domain, a variable linker region, and a C-terminal domain similar to that of sucrose-phosphate phosphatase, the next and final enzyme of sucrose biosynthesis. The C-terminal domain is likely to serve a binding - not a catalytic - function, as sucrose-phosphate phosphatase is always encoded by a distinct protein. ; GO: 0046524 sucrose-phosphate synthase activity, 0005985 sucrose metabolic process.
Probab=38.27 E-value=28 Score=15.15 Aligned_cols=239 Identities=16% Similarity=0.209 Sum_probs=122.0
Q ss_pred CCCCEEEE-----EC-----HHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC-HHHHHHHHHHHCCCCC---CCHH
Q ss_conf 28886898-----51-----177657999986630134631111002211003663-5579999986401567---7422
Q gi|254780767|r 87 SKPDVLLI-----VD-----NPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGR-ARKMCAYINQVISILP---FEKE 152 (383)
Q Consensus 87 ~~Pd~vi~-----iD-----~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R-~k~~~~~~d~~~~ifp---FE~~ 152 (383)
---.+||+ || |-||...|.|+||.+. +| +...-||-=.|.+|=| |..=
T Consensus 381 DasE~ViTSTrQEIeEQW~LYdGFD~~LerkLRaR~------------------rRgVsC~GRfMPRM~vIPPGmeF~~i 442 (1072)
T TIGR02468 381 DASEIVITSTRQEIEEQWGLYDGFDVVLERKLRARA------------------RRGVSCYGRFMPRMAVIPPGMEFSHI 442 (1072)
T ss_pred CCCEEEEECCCCCHHHHCCCCCCCCCEEEHHHHHCC------------------CCCCCCCCCCCCCCEECCCCCCCCCC
T ss_conf 110001004442137515654775201101022111------------------26864246527732004879654410
Q ss_pred HH---HCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCC--CCC
Q ss_conf 32---0025531476388211221001355888976187655650599853874301230511189998764027--351
Q gi|254780767|r 153 VM---QRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRN--PFF 227 (383)
Q Consensus 153 ~f---~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~--~~~ 227 (383)
.- .. .+++....|++-........-=.+.- ++-.++.+|.|+=| ||.. =++|+-.+++|.=+...-+ -|+
T Consensus 443 ~~~~~~d-~d~~~~~~~~~~~~~~~~PpIWseim-RFftnp~KPmILAL--aRPD-PkKNiTTLvKAFGECRpLRELANL 517 (1072)
T TIGR02468 443 VPQEDHD-GDMDTETEGNEESSAKADPPIWSEIM-RFFTNPRKPMILAL--ARPD-PKKNITTLVKAFGECRPLRELANL 517 (1072)
T ss_pred CCCCCCC-CCHHHHHHCCCCCCCCCCCCCHHHHH-HHHCCCCCCEEEEC--CCCC-CCCHHHHHHHHHCCCCCHHHHHHH
T ss_conf 2357775-53134432133567778784178899-86318898779732--6878-730147788763378614677657
Q ss_pred EEEEC----------CCCCHHHHHHHHHHHCCCCCEEEEE----CCCCHHHHHHHH--------HHHC-CCHHHHHHHHH
Q ss_conf 26201----------6633688999999604888505520----552035788763--------5523-31156688876
Q gi|254780767|r 228 RFSLV----------TVSSQENLVRCIVSKWDISPEIIID----KEQKKQVFMTCN--------AAMA-ASGTVILELAL 284 (383)
Q Consensus 228 ~~~i~----------~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~l~~sd--------~ai~-~SGTaTLE~al 284 (383)
..++- +..++--.+...+.+|++--.|-.. ..+-.+++.-|- -|++ .-|-.=.|+|+
T Consensus 518 tLImGNRD~IDems~~~~sVL~svLkLID~YDLYGqVAYPKHHkqsDVP~IYRLAAktKGVFINPA~~EPFGLTLIEAAa 597 (1072)
T TIGR02468 518 TLIMGNRDDIDEMSSGSASVLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPALIEPFGLTLIEAAA 597 (1072)
T ss_pred HHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCHHHHHHHH
T ss_conf 74414752235451555589999998862003565546776788888724889974279657523210456436899986
Q ss_pred HCCCEEEECCC-CCCEEEEEECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHH
Q ss_conf 27530254057-74100001024676102302440784261242054898999999999844989999999-99999999
Q gi|254780767|r 285 CGIPVVSIYKS-EWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAML-HGFENLWD 362 (383)
Q Consensus 285 ~g~P~IV~Yk~-~~lt~~i~~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~-~~~~~~~~ 362 (383)
.|.|||.. |- +|+. +-+.+-|-=+ + +-=..+.|++++.+|+.|...=.+.+ +++++++
T Consensus 598 ~GLP~VAT-KNGGPVD-------------I~~vL~NGLL----v-DPHdq~aIa~ALLkLvadK~LW~~CR~NGLkNIH- 657 (1072)
T TIGR02468 598 YGLPMVAT-KNGGPVD-------------IHRVLDNGLL----V-DPHDQEAIADALLKLVADKQLWAKCRQNGLKNIH- 657 (1072)
T ss_pred CCCCEEEE-CCCCCHH-------------HHHHHHCCCC----C-CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-
T ss_conf 39977983-5868133-------------8877317873----3-6776688999999986215778999736450245-
Q ss_pred HHCCCC
Q ss_conf 838999
Q gi|254780767|r 363 RMNTKK 368 (383)
Q Consensus 363 ~Lg~~~ 368 (383)
....|.
T Consensus 658 ~FSWPe 663 (1072)
T TIGR02468 658 LFSWPE 663 (1072)
T ss_pred CCCCHH
T ss_conf 676755
No 349
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=38.19 E-value=29 Score=15.14 Aligned_cols=113 Identities=19% Similarity=0.164 Sum_probs=57.2
Q ss_pred CCCCEEEEEECCCCH---H---------HHHHHHHHHHHHHCCCCEEEEEECCH-HHHHCCCEEEECHHHCCEEEHHHHH
Q ss_conf 987459999768214---7---------89999999999738998399997178-9994788065044453110136746
Q gi|254780767|r 1 MNSLKIAVIAGEISG---D---------LLAGDLIKSLKEMVSYPINLVGVGGP-SLQKEGLVSLFDFSELSVIGIMQVV 67 (383)
Q Consensus 1 m~~mki~i~aGE~SG---D---------~~~a~li~~Lk~~~~~~~~~~giGG~-~m~~~G~~~~~~~~~l~v~G~~evl 67 (383)
|++|...|.||..|- | -+-..+++.|+.... .+-+..-... ++..-|+..+.|...-. |-...+
T Consensus 2 ~~~~~~vILAGG~srRm~dK~l~~~~g~~lie~v~~~L~~~~~-~vvi~~~~~~~~~~~~g~~vv~D~~~~~--GPL~Gi 78 (192)
T COG0746 2 MTPMTGVILAGGKSRRMRDKALLPLNGRPLIEHVIDRLRPQVD-VVVISANRNQGRYAEFGLPVVPDELPGF--GPLAGI 78 (192)
T ss_pred CCCCEEEEECCCCCCCCCCCEEEEECCEEHHHHHHHHHHCCCC-EEEEECCCCHHHHHCCCCCEEECCCCCC--CCHHHH
T ss_conf 9873699977875356788745787982899999998740188-7999768734244316985754788888--878999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCC-EEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCH
Q ss_conf 64599999999998610012888-6898511776579999866301346311110022110036635
Q gi|254780767|r 68 RHLPQFIFRINQTVELIVSSKPD-VLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRA 133 (383)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~~~~Pd-~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~ 133 (383)
. ...++.. .+. .++-+|.|=++-.+..++.....+.+ +.-+|+|..+|.
T Consensus 79 ~----------~al~~~~--~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~-----~~~~~~~~~g~~ 128 (192)
T COG0746 79 L----------AALRHFG--TEWVLVLPCDMPFIPPELVERLLSAFKQTG-----AAIVPAHDDGRL 128 (192)
T ss_pred H----------HHHHHCC--CCEEEEEECCCCCCCHHHHHHHHHHHCCCC-----CCEEEECCCCCE
T ss_conf 9----------9998579--875999816778789999999998623478-----847886589937
No 350
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=37.85 E-value=29 Score=15.10 Aligned_cols=134 Identities=17% Similarity=0.290 Sum_probs=63.6
Q ss_pred HHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEE---ECCCCCCC-CCCCHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 998610012888689851177657999986630134631111---00221100-36635579999986401567742232
Q gi|254780767|r 79 QTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINY---VCPSVWAW-REGRARKMCAYINQVISILPFEKEVM 154 (383)
Q Consensus 79 ~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~y---v~PqvWAW-r~~R~k~~~~~~d~~~~ifpFE~~~f 154 (383)
++.+.+...+.|.+|++.. +.+-...+.+.+. ++|+|.+ ....-|.| ...........+++++.
T Consensus 55 ~~~~~l~~~~vdGiIi~~~-~~~~~~~~~l~~~--~iPvV~~d~~~~~~~~~~V~~d~~~a~~~~~~~L~~--------- 122 (275)
T cd06295 55 WLARYLASGRADGVILIGQ-HDQDPLPERLAET--GLPFVVWGRPLPGQPYCYVGSDNVGGGRLATEHLLA--------- 122 (275)
T ss_pred HHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHC--CCCEEEECCCCCCCCCCEEEECHHHHHHHHHHHHHH---------
T ss_conf 9999998489988999799-8997999999957--999999986268999978982879999999999998---------
Q ss_pred HCCCCCCEEECCCCCCCCCC--CCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEEC
Q ss_conf 00255314763882112210--0135588897618765565059985387430123051118999876402735126201
Q gi|254780767|r 155 QRLGGPPTTFVGHPLSSSPS--ILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLV 232 (383)
Q Consensus 155 ~k~~~~~~~fVGHPl~d~~~--~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~ 232 (383)
+ +.-+..|+|.|.-.... ......+..++.++.... ..+.+++-..| --.++++.+.++.+...-++.
T Consensus 123 -~-G~~~I~~i~~~~~~~~~~~R~~Gf~~a~~~~~~~~~~--~~~~~~~~~~~------~~~~~~~~~l~~~~~~~ai~~ 192 (275)
T cd06295 123 -R-GRRRIAFLGGPQDMPEGEERLEGYREALAEAGLPLDP--RLVAPGDFTEE------SGRAAMRALLERGPDFDAVFA 192 (275)
T ss_pred -H-CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCC--CEEEECCCCHH------HHHHHHHHHHHCCCCCCEEEE
T ss_conf -0-9987987058866726999999999999986999994--17996577668------799998889854999870341
Q ss_pred CC
Q ss_conf 66
Q gi|254780767|r 233 TV 234 (383)
Q Consensus 233 ~~ 234 (383)
..
T Consensus 193 ~n 194 (275)
T cd06295 193 AS 194 (275)
T ss_pred CC
T ss_conf 47
No 351
>KOG2892 consensus
Probab=37.67 E-value=29 Score=15.08 Aligned_cols=76 Identities=9% Similarity=0.118 Sum_probs=38.5
Q ss_pred CCEEEEEECCCCH--HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEE-CHHHCCEEEHHHHHHHHHHHHHHHHH
Q ss_conf 7459999768214--78999999999973899839999717899947880650-44453110136746645999999999
Q gi|254780767|r 3 SLKIAVIAGEISG--DLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLF-DFSELSVIGIMQVVRHLPQFIFRINQ 79 (383)
Q Consensus 3 ~mki~i~aGE~SG--D~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~-~~~~l~v~G~~evl~~~~~~~~~~~~ 79 (383)
.++++=+.+--|- =+..-.+...|++++| +.+|-=+- |+-.|.+.+. ...++.- |.++ -++
T Consensus 4 ~~~~irIGtRKSkLAvIQs~~v~~~Lek~YP-~l~f~I~t---~~T~GDkIl~k~L~~ig~-------KsLf-----TkE 67 (320)
T KOG2892 4 RTAVIRIGTRKSKLAVIQSYHVREKLEKKYP-ELAFEIIT---MSTTGDKILSKPLAKIGG-------KSLF-----TKE 67 (320)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEEE---ECCCCHHHHHCHHHHHCC-------CCHH-----HHH
T ss_conf 6548971476661012307999999986598-86357998---314336776144766265-------4100-----788
Q ss_pred HHHHCCCCCCCEEEE
Q ss_conf 986100128886898
Q gi|254780767|r 80 TVELIVSSKPDVLLI 94 (383)
Q Consensus 80 ~~~~i~~~~Pd~vi~ 94 (383)
+-+.+.+...|++|-
T Consensus 68 LE~aL~~~~~divVH 82 (320)
T KOG2892 68 LEDALINGHVDIVVH 82 (320)
T ss_pred HHHHHHCCCCCEEEE
T ss_conf 999985398528987
No 352
>PTZ00117 malate dehydrogenase; Provisional
Probab=37.66 E-value=29 Score=15.08 Aligned_cols=59 Identities=10% Similarity=0.009 Sum_probs=28.2
Q ss_pred HHHCCCHHHHHHHHHHCCCEEEECCCCCCEEEEE--ECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHH
Q ss_conf 5523311566888762753025405774100001--02467610230244078426124205489899
Q gi|254780767|r 270 AAMAASGTVILELALCGIPVVSIYKSEWIVNFFI--FYIKTWTCALPNLIVDYPLVPEYFNSMIRSEA 335 (383)
Q Consensus 270 ~ai~~SGTaTLE~al~g~P~IV~Yk~~~lt~~i~--~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~ 335 (383)
.+++.+-.--.|+-+.+...++- .+.++- .-+.--|+|+|=+|-.+.| .+ +.-+.++++
T Consensus 230 ~gia~a~~~iv~aIl~d~~~vlp-----vs~~l~g~yg~~dv~lsvP~viG~~Gv-e~-ve~~L~~~E 290 (313)
T PTZ00117 230 FAPAAAIVKMIKSYLKNEKSLLT-----CAVYLNGQYNCSNLFVGVTAVINKNGA-EP-VEFNLTDEE 290 (313)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEE-----EEEECCCCCCCCCEEEEEEEEECCCCE-EE-CCCCCCHHH
T ss_conf 04899999999999769995899-----898703666873579998899927814-88-489999999
No 353
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=37.62 E-value=29 Score=15.08 Aligned_cols=13 Identities=8% Similarity=0.151 Sum_probs=5.0
Q ss_pred CCCEEEEEECCCC
Q ss_conf 5650599853874
Q gi|254780767|r 191 QWKKILLLPGSRA 203 (383)
Q Consensus 191 ~~~~I~llPGSR~ 203 (383)
-++++-|+--++.
T Consensus 107 yrP~vfLiTDG~P 119 (207)
T COG4245 107 YRPWVFLITDGEP 119 (207)
T ss_pred CCEEEEEECCCCC
T ss_conf 4417999538996
No 354
>PRK05086 malate dehydrogenase; Provisional
Probab=37.55 E-value=20 Score=16.18 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=17.2
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCC--CCEEEEEE
Q ss_conf 4599997682147899999999997389--98399997
Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVS--YPINLVGV 39 (383)
Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~--~~~~~~gi 39 (383)
|||-|+-. || .-|+.+.-.|+.+.+ .++-++-+
T Consensus 1 mKV~IiGA--~G-~VG~s~A~~l~~~~~~~~el~L~Di 35 (312)
T PRK05086 1 MKVAVLGA--AG-GIGQALALLLKTQLPAGSELSLYDI 35 (312)
T ss_pred CEEEEECC--CC-HHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 98999989--98-6999999999828987774999758
No 355
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=37.47 E-value=29 Score=15.06 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=19.9
Q ss_pred CEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECC
Q ss_conf 50599853874301230511189998764027351262016
Q gi|254780767|r 193 KKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVT 233 (383)
Q Consensus 193 ~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~ 233 (383)
+.|++.-+.-.. .+-+....+.+++|.+++.+..
T Consensus 136 ~~IgvITS~tgA-------a~~Di~~~~~~R~p~~~i~l~p 169 (443)
T PRK00286 136 KRIGVITSPTGA-------AIRDILTVLSRRFPSVEVIIYP 169 (443)
T ss_pred CEEEEEECCCHH-------HHHHHHHHHHCCCCCEEEEEEE
T ss_conf 579998368438-------9999999985049965999981
No 356
>PRK13367 protocatechuate 4,5-dioxygenase; Provisional
Probab=37.45 E-value=22 Score=15.91 Aligned_cols=79 Identities=13% Similarity=0.096 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEE-EC----CCCCCCCCCCHH------HHHH
Q ss_conf 999999999986100128886898511776-57999986630134631111-00----221100366355------7999
Q gi|254780767|r 71 PQFIFRINQTVELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINY-VC----PSVWAWREGRAR------KMCA 138 (383)
Q Consensus 71 ~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~y-v~----PqvWAWr~~R~k------~~~~ 138 (383)
..++.-+..+.+++++.+||++|.|=.-.| |+-+- .+|++-. ++ |-==-|++..+. .+++
T Consensus 31 ~p~F~gf~p~r~WL~e~kPDVli~vyNDH~~~FflD--------~~PtFaIGva~~y~pADEG~Gpr~vP~v~Gh~eLa~ 102 (418)
T PRK13367 31 APIFESFAPLRDWLQQKRPDVLFYIYNDHVTSFFFD--------HYSAFALGVDDQYHVADEGGGPRDLPPIRGHAALSR 102 (418)
T ss_pred HHHHCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHH--------CCCHHEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 777505568999999709998999926458887775--------497230532544688766779989998899989999
Q ss_pred HHHHHCCCCCCCHHHHHCC
Q ss_conf 9986401567742232002
Q gi|254780767|r 139 YINQVISILPFEKEVMQRL 157 (383)
Q Consensus 139 ~~d~~~~ifpFE~~~f~k~ 157 (383)
.+-.-+.-=.|...++.+.
T Consensus 103 HI~~sLv~deFD~t~~~em 121 (418)
T PRK13367 103 HIGQSLMADEFDMSFFQDK 121 (418)
T ss_pred HHHHHHHHCCCCHHHHCCC
T ss_conf 9999987547677776466
No 357
>PRK13373 putative dioxygenase; Provisional
Probab=37.39 E-value=29 Score=15.06 Aligned_cols=34 Identities=12% Similarity=0.304 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHH
Q ss_conf 9999999999861001288868985117765799
Q gi|254780767|r 71 PQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRV 104 (383)
Q Consensus 71 ~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~l 104 (383)
-++...+.++.+.++..+||++|.+-.=.||--.
T Consensus 29 ~~v~~a~~~~r~~l~a~~PDvvVv~~~DH~~~Ff 62 (344)
T PRK13373 29 RRLLQAADRLGRSLDAARPDVIIAFLDDHFENHF 62 (344)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHH
T ss_conf 9999999999999997299989998720787631
No 358
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=37.18 E-value=30 Score=15.03 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECHH
Q ss_conf 6459999999999861001288868985117
Q gi|254780767|r 68 RHLPQFIFRINQTVELIVSSKPDVLLIVDNP 98 (383)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~p 98 (383)
+..-++...++++.+.|.+.+||++|..|.-
T Consensus 22 ~~w~~lr~ay~~~~~~i~~~~pD~ivV~stH 52 (271)
T cd07373 22 PSWGQFAAATRQAGKALAASRPDVVLVYSTQ 52 (271)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 5589999999999999985399989998787
No 359
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=36.98 E-value=30 Score=15.01 Aligned_cols=31 Identities=26% Similarity=0.618 Sum_probs=11.7
Q ss_pred CCCEEEE-ECHHHHH-HHHHHHHHHHCCCCCCE
Q ss_conf 8886898-5117765-79999866301346311
Q gi|254780767|r 88 KPDVLLI-VDNPDFT-HRVAKRVRKKMPNLPII 118 (383)
Q Consensus 88 ~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ipvi 118 (383)
.||+|++ +.-||-+ +-+-+.+++..+++|||
T Consensus 48 ~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI 80 (464)
T COG2204 48 PFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVI 80 (464)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
T ss_conf 999899816789996699999999638999889
No 360
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=36.87 E-value=30 Score=15.00 Aligned_cols=77 Identities=21% Similarity=0.279 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHCCCCEEEEEEC--CHHHHHCCCEEEECHHHCCEE---------------------------EHHHHHHH
Q ss_conf 9999999997389983999971--789994788065044453110---------------------------13674664
Q gi|254780767|r 19 AGDLIKSLKEMVSYPINLVGVG--GPSLQKEGLVSLFDFSELSVI---------------------------GIMQVVRH 69 (383)
Q Consensus 19 ~a~li~~Lk~~~~~~~~~~giG--G~~m~~~G~~~~~~~~~l~v~---------------------------G~~evl~~ 69 (383)
+..+..++++.....+.+.=+| |- -+++-++++++-..-.+- ||.|--.-
T Consensus 17 ~~el~a~~~~~~~~sltILvlGKtGV-GKSsTINSifgE~~~~~~aF~~~t~r~~~v~~tv~G~kl~iIDTPGL~~~~~~ 95 (249)
T cd01853 17 ALELEAKGKEELDFSLTILVLGKTGV-GKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMD 95 (249)
T ss_pred HHHHHHCCCCCCCCEEEEEEEECCCC-CHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCCCCC
T ss_conf 99998513524564369999806876-45776776508541344776778865089987533448998608987766542
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 599999999998610012888689851
Q gi|254780767|r 70 LPQFIFRINQTVELIVSSKPDVLLIVD 96 (383)
Q Consensus 70 ~~~~~~~~~~~~~~i~~~~Pd~vi~iD 96 (383)
-..=.+.+..+++.+++..||+|..+|
T Consensus 96 ~~~N~k~l~~iKr~l~~~~~DvvLYvD 122 (249)
T cd01853 96 QRVNRKILSSIKRYLKKKTPDVVLYVD 122 (249)
T ss_pred CHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 213099999999996289997899984
No 361
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=36.75 E-value=30 Score=14.99 Aligned_cols=49 Identities=24% Similarity=0.230 Sum_probs=32.5
Q ss_pred HHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEE--CCCCCCC
Q ss_conf 99986100128886898511776579999866301346311110--0221100
Q gi|254780767|r 78 NQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYV--CPSVWAW 128 (383)
Q Consensus 78 ~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv--~PqvWAW 128 (383)
....+.+.+.+.+++|.--+.+-.+.++..+.+. ++|++... +|++...
T Consensus 61 ~~a~~Li~~d~V~~viG~~~S~~~~a~~~~~~~~--~ip~i~~~a~~~~l~~~ 111 (345)
T cd06338 61 RAYERLITQDKVDFLLGPYSSGLTLAAAPVAEKY--GVPMVAGSGASDSIFAQ 111 (345)
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHCCCHHHHHC--CCEEECCCCCCCHHHCC
T ss_conf 9999999618953997686614320010378871--96662566568222227
No 362
>PRK13370 mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase; Provisional
Probab=36.73 E-value=30 Score=14.99 Aligned_cols=49 Identities=12% Similarity=0.257 Sum_probs=32.4
Q ss_pred HHCCEEEHHHHHHH-HHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHH
Q ss_conf 45311013674664-59999999999861001288868985117765799
Q gi|254780767|r 56 SELSVIGIMQVVRH-LPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRV 104 (383)
Q Consensus 56 ~~l~v~G~~evl~~-~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~l 104 (383)
++-..+|+.++-.. .-.+...+.++.+.+.+.+||++|.+-.=.||--+
T Consensus 9 SHsPl~g~~dp~~~~~~~v~~a~~~~r~~l~~~~PDvvVv~~~DH~~~Ff 58 (313)
T PRK13370 9 SHSPLVGYVDPAQEVLDEVNAAIAAARERVAAFDPELVVLFAPDHYNGFF 58 (313)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHC
T ss_conf 66876789998889999999999999999998299989998525887630
No 363
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=36.63 E-value=8.6 Score=18.58 Aligned_cols=46 Identities=7% Similarity=0.185 Sum_probs=34.7
Q ss_pred CCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC
Q ss_conf 012888689851177657999986630134631111002211003663
Q gi|254780767|r 85 VSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGR 132 (383)
Q Consensus 85 ~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R 132 (383)
.....+.+|.|.+|.-..++.+++++. +++..-+|.|+.+-|+.-+
T Consensus 53 ~~~~~~~~IaIG~~~~R~ki~~~l~~~--~~~~~niIhp~a~i~~~~~ 98 (197)
T cd03360 53 PPPDDEFVVAIGDNKLRRKLAEKLLAA--GYRFATLIHPSAVVSPSAV 98 (197)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHC--CCEEEEEECCCCEECCCCE
T ss_conf 677778999839879999999999868--9967899999959877747
No 364
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=36.55 E-value=30 Score=14.97 Aligned_cols=54 Identities=17% Similarity=0.123 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCHH---HHHHHHHHCCC
Q ss_conf 3368899999960488850552055203578876355233115---66888762753
Q gi|254780767|r 235 SSQENLVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAASGT---VILELALCGIP 288 (383)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd~ai~~SGT---aTLE~al~g~P 288 (383)
+..+.+.+.+.++++..+.........|+.+..-..||-..|| ..+-.||.++.
T Consensus 255 p~~~~f~~~y~~~~g~~~~~~~~~~~~Yd~~~~la~Aie~AGs~D~~av~~AL~~~~ 311 (359)
T TIGR03407 255 PANKKFVKAFKAKYGDDRVTNDPMEAAYLGVYLWKAAVEKAGSFDVDAVRDAAIGIE 311 (359)
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
T ss_conf 245999999999848999888799999999999999999848999999999972797
No 365
>PRK06179 short chain dehydrogenase; Provisional
Probab=36.40 E-value=30 Score=14.95 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=29.2
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 98745999976821478999999999973899839999717
Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGG 41 (383)
Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG 41 (383)
|++-|+.+++|-.|| .|..+.+.|-++ +.++.+.+-
T Consensus 1 M~~~KvalITGassG--IG~a~A~~la~~---G~~V~~~~r 36 (270)
T PRK06179 1 MSNKKVALVTGASSG--IGRATAEALARA---GYRVFGTSR 36 (270)
T ss_pred CCCCCEEEEECCCCH--HHHHHHHHHHHC---CCEEEEEEC
T ss_conf 989958999072469--999999999987---999999968
No 366
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=36.22 E-value=31 Score=14.94 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCHH
Q ss_conf 368899999960488850552055203578876355233115
Q gi|254780767|r 236 SQENLVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAASGT 277 (383)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd~ai~~SGT 277 (383)
..+.+++.+.++++..+.+.......|+.+..-..||-..||
T Consensus 254 ~n~~Fv~~y~~kyg~~p~~~~~a~~aY~av~lla~Aie~AGS 295 (374)
T TIGR03669 254 ENEAFVERFYAKFPDAPYINQEAENNYFSVYMYKQAVEEAGT 295 (374)
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 899999999997599998766999999999999999999789
No 367
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=36.06 E-value=31 Score=14.92 Aligned_cols=101 Identities=15% Similarity=0.220 Sum_probs=59.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 59999768214789999999999738998399997178999478806504445311013674664599999999998610
Q gi|254780767|r 5 KIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELI 84 (383)
Q Consensus 5 ki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i 84 (383)
||+|+.+.- ||..++.-+++ . +.++.|+-.+.-...+ ..+..+.+.|..+.+.++
T Consensus 1 KiiIiGaGg----~ar~v~~~~~~--~-~~~v~gfiDd~~~~~~----~~~~~~~vlg~~~~~~~~-------------- 55 (201)
T TIGR03570 1 KLVIIGAGG----HGRVVADIAES--S-GWEIVGFLDDNPALQG----TSVDGLPVLGGDEDLLKL-------------- 55 (201)
T ss_pred CEEEECCCH----HHHHHHHHHHH--C-CCEEEEEEECCCCCCC----CCCCCEEEECCHHHHHHC--------------
T ss_conf 999996788----99999999996--8-9939999989830067----515882486707888754--------------
Q ss_pred CCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC
Q ss_conf 012888689851177657999986630134631111002211003663
Q gi|254780767|r 85 VSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGR 132 (383)
Q Consensus 85 ~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R 132 (383)
....-..++.|-+|..--++.+++++. +++..-+|.|+.+-|+.-+
T Consensus 56 ~~~~~~~~iaIG~~~~R~ki~~~l~~~--~~~f~~lIhp~a~i~~~~~ 101 (201)
T TIGR03570 56 PPDEVDLVVAIGDNKLRRRLVEKLKAK--GYRFATLIHPSAIVSPSAS 101 (201)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHC--CCEEEEEECCCCEECCCCE
T ss_conf 856668999919989999999999868--9967899999809889867
No 368
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain; InterPro: IPR005974 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model IPR005972 from INTERPRO.; GO: 0016163 nitrogenase activity, 0051536 iron-sulfur cluster binding, 0009399 nitrogen fixation.
Probab=36.04 E-value=15 Score=17.03 Aligned_cols=39 Identities=21% Similarity=0.488 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHH--------------HHHHHHHCCCCCCC-EEEEECHHHHH
Q ss_conf 36746645999999--------------99998610012888-68985117765
Q gi|254780767|r 63 IMQVVRHLPQFIFR--------------INQTVELIVSSKPD-VLLIVDNPDFT 101 (383)
Q Consensus 63 ~~evl~~~~~~~~~--------------~~~~~~~i~~~~Pd-~vi~iD~pgFn 101 (383)
+.|+++.+|.+++. ++-+.+.+.++.|| =|+.|.+|||.
T Consensus 127 i~EAf~efP~ikr~~~Y~TC~TaLIGDDI~Aia~eV~ee~p~vDvf~~n~PGFa 180 (468)
T TIGR01284 127 ILEAFKEFPEIKRMIVYATCATALIGDDIDAIAKEVMEEIPDVDVFAVNAPGFA 180 (468)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 999986054332377841678743244478999998752799428998177898
No 369
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=36.04 E-value=31 Score=14.92 Aligned_cols=305 Identities=14% Similarity=0.121 Sum_probs=150.7
Q ss_pred CCCCHHHH---HHHHHHHHHHHCCCC-EEEEEEC-C-H---HHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHH-HHHHH
Q ss_conf 68214789---999999999738998-3999971-7-8---999478806504445311013674664599999-99999
Q gi|254780767|r 11 GEISGDLL---AGDLIKSLKEMVSYP-INLVGVG-G-P---SLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIF-RINQT 80 (383)
Q Consensus 11 GE~SGD~~---~a~li~~Lk~~~~~~-~~~~giG-G-~---~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~-~~~~~ 80 (383)
|=-|+|++ -+-+++.+-+..+.+ +|++..- | + .|++- +.-.+-|...+.+ -..+.
T Consensus 263 GylS~dlr~Havg~l~~~v~e~hDRdkfEvfay~~g~~~~dal~~r---------------I~a~~~~~~~~~~~dd~e~ 327 (620)
T COG3914 263 GYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPHTDALQER---------------ISAAVEKWYPIGRMDDAEI 327 (620)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHCHHHEEEEEEECCCCCCHHHHHH---------------HHHHHHHEECCCCCCHHHH
T ss_conf 8852546411389999999987350015899996588773167888---------------8876531410588688999
Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHH----CCCCCCCHHHHHC
Q ss_conf 861001288868985117765799998663013463111100221100366355799999864----0156774223200
Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQV----ISILPFEKEVMQR 156 (383)
Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~----~~ifpFE~~~f~k 156 (383)
.+.|+...-|++|-+|.---+-|..=.++|- -|+. =-|--+=+..-..+.|.. .++=|-++++|..
T Consensus 328 a~~I~~d~IdILvDl~g~T~d~r~~v~A~Rp---APiq-------vswlGy~aT~g~p~~DY~I~D~y~vPp~ae~yysE 397 (620)
T COG3914 328 ANAIRTDGIDILVDLDGHTVDTRCQVFAHRP---APIQ-------VSWLGYPATTGSPNMDYFISDPYTVPPTAEEYYSE 397 (620)
T ss_pred HHHHHHCCCEEEEECCCCEECCCHHHHHCCC---CCEE-------EEECCCCCCCCCCCCEEEEECCEECCCHHHHHHHH
T ss_conf 9998725870999656721034003663577---7648-------76226566668876307850760368147789989
Q ss_pred -CCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCC-
Q ss_conf -255314763882112210013558889761876556505998538743012305111899987640273512620166-
Q gi|254780767|r 157 -LGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTV- 234 (383)
Q Consensus 157 -~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~- 234 (383)
.--++-+|.+|--...+.+. ..|.+.|++++. +..+-|-+.+.+. |-..+.=..+.+.-|+-.+++-..
T Consensus 398 kl~RLp~cy~p~d~~~~v~p~----~sR~~lglp~~a--vVf~c~~n~~K~~---pev~~~wmqIL~~vP~Svl~L~~~~ 468 (620)
T COG3914 398 KLWRLPQCYQPVDGFEPVTPP----PSRAQLGLPEDA--VVFCCFNNYFKIT---PEVFALWMQILSAVPNSVLLLKAGG 468 (620)
T ss_pred HHHHCCCCCCCCCCCCCCCCC----CCHHHCCCCCCE--EEEEECCCCCCCC---HHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 987330136887775658899----432105999980--8999668864478---7999999999984898579982689
Q ss_pred --CCHHHHHHHHHHHCCCCCEEEEEC-----CCCHHHHHHHHHHHCCC----HHHHHHHHHHCCCEEEECCCCCCEEEEE
Q ss_conf --336889999996048885055205-----52035788763552331----1566888762753025405774100001
Q gi|254780767|r 235 --SSQENLVRCIVSKWDISPEIIIDK-----EQKKQVFMTCNAAMAAS----GTVILELALCGIPVVSIYKSEWIVNFFI 303 (383)
Q Consensus 235 --~~~~~~~~~~~~~~~~~~~i~~~~-----~~~~~~l~~sd~ai~~S----GTaTLE~al~g~P~IV~Yk~~~lt~~i~ 303 (383)
++....++...+..+...+-.... .....-+..+|+++-+- +|.|+|+--+|+|++.-+--.|.+..-.
T Consensus 469 ~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTyPY~g~TTa~daLwm~vPVlT~~G~~FasR~~~ 548 (620)
T COG3914 469 DDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTYPYGGHTTASDALWMGVPVLTRVGEQFASRNGA 548 (620)
T ss_pred CCHHHHHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHCHHHEEEECCCCCCCCCHHHHHHHCCCEEEECCHHHHHHHHH
T ss_conf 86889999999999708981334626999988999862313246524667886426777873584465111778876059
Q ss_pred ECCCCCCEEEEHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 024676102302440784261242054898999999999844989999999999999998
Q gi|254780767|r 304 FYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDR 363 (383)
Q Consensus 304 ~lik~~~i~LpNii~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~ 363 (383)
-+ +..--+||++-. +.+.-......+=.|...|++....++.-++.
T Consensus 549 si------------~~~agi~e~vA~--s~~dYV~~av~~g~dral~q~~r~~l~~~r~t 594 (620)
T COG3914 549 SI------------ATNAGIPELVAD--SRADYVEKAVAFGSDRALRQQVRAELKRSRQT 594 (620)
T ss_pred HH------------HHHCCCCHHHCC--CHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf 99------------986698024218--88899999998534177787557999840326
No 370
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=35.96 E-value=31 Score=14.91 Aligned_cols=23 Identities=4% Similarity=0.271 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 99999999861001288868985
Q gi|254780767|r 73 FIFRINQTVELIVSSKPDVLLIV 95 (383)
Q Consensus 73 ~~~~~~~~~~~i~~~~Pd~vi~i 95 (383)
+.+.++++++.+++..|++.|++
T Consensus 79 ~~~~~~~~I~~ir~~~P~a~ill 101 (189)
T cd01825 79 YRQQLREFIKRLRQILPNASILL 101 (189)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999999997589980999
No 371
>PRK07735 NADH dehydrogenase subunit C; Validated
Probab=35.93 E-value=21 Score=16.02 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=14.7
Q ss_pred HHHHHHCCCCCCCHHHHHCCCCCCEEECCCCCCCC
Q ss_conf 99986401567742232002553147638821122
Q gi|254780767|r 138 AYINQVISILPFEKEVMQRLGGPPTTFVGHPLSSS 172 (383)
Q Consensus 138 ~~~d~~~~ifpFE~~~f~k~~~~~~~fVGHPl~d~ 172 (383)
..+|.+=..|+=-+++.. . =++-.||||||...
T Consensus 380 EayDLLGi~F~GHpnL~R-I-~mpddWvGhPLRKD 412 (420)
T PRK07735 380 EAYDLLGIVFKGHPNLSR-I-LMPDDWVGHPLRKD 412 (420)
T ss_pred HHHHHHCCCCCCCCCCEE-E-ECCCCCCCCCCCCC
T ss_conf 566540211269988000-1-16644457843355
No 372
>pfam01973 MAF_flag10 Protein of unknown function DUF115. This family of archaebacterial proteins has no known function.
Probab=35.28 E-value=32 Score=14.84 Aligned_cols=82 Identities=24% Similarity=0.380 Sum_probs=39.6
Q ss_pred HHHHHHHCCCCEEEEEEC-CHHHHHCCCEEEECHH-HCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHH
Q ss_conf 999997389983999971-7899947880650444-53110136746645999999999986100128886898511776
Q gi|254780767|r 23 IKSLKEMVSYPINLVGVG-GPSLQKEGLVSLFDFS-ELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDF 100 (383)
Q Consensus 23 i~~Lk~~~~~~~~~~giG-G~~m~~~G~~~~~~~~-~l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF 100 (383)
++.|+.... +..++=+| ||.+++. ++.+-+.. +.-+++.--.++.+ .+ ...+||.++.+|....
T Consensus 15 ~~~l~~~~~-g~~~~IvgaGPSL~~~-i~~Lk~~~~~~~iia~~~a~~~L----------~~--~gI~Pd~~v~~D~~~~ 80 (169)
T pfam01973 15 LKELLNKKK-GKPAIIVGAGPSLDKH-LPLLKKNRDKAVIIAADSALKAL----------LK--HGIKPDIVVSLDRQEI 80 (169)
T ss_pred HHHHHHHHC-CCEEEEECCCCCHHHH-HHHHHHHCCCEEEEEECHHHHHH----------HH--CCCCCEEEEEECCCHH
T ss_conf 999988748-9719999568998999-99999716983999966799999----------97--7998149999748645
Q ss_pred HHHHHHHHHHHCCCCCCEE
Q ss_conf 5799998663013463111
Q gi|254780767|r 101 THRVAKRVRKKMPNLPIIN 119 (383)
Q Consensus 101 nl~lak~lkk~~~~ipvi~ 119 (383)
+....+...+. ..++.++
T Consensus 81 ~~~~~~~~~~~-~~~~lv~ 98 (169)
T pfam01973 81 SYEFFKEAFKE-GDIPLVH 98 (169)
T ss_pred HHHHHHHHCCC-CCEEEEE
T ss_conf 69998643125-8848999
No 373
>pfam01993 MTD methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase. This enzyme family is involved in formation of methane from carbon dioxide EC:1.5.99.9. The enzyme requires coenzyme F420.
Probab=35.16 E-value=32 Score=14.83 Aligned_cols=62 Identities=23% Similarity=0.434 Sum_probs=32.1
Q ss_pred EEEEE-ECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC-CHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf 59999-7682147899999999997389983999971-789994788065044453110136746645999999999986
Q gi|254780767|r 5 KIAVI-AGEISGDLLAGDLIKSLKEMVSYPINLVGVG-GPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVE 82 (383)
Q Consensus 5 ki~i~-aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG-G~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~ 82 (383)
||-|+ +|--.--...-.+..+.-. ..|++.+-+| |.+|+.+-++ ++ ..+
T Consensus 3 kiGiiK~GNIg~s~~idl~LDErAd--RedI~vrv~gsGaKm~pe~~e--------------~~-------------~~~ 53 (276)
T pfam01993 3 KIGIIKCGNIGTSPVVDLLLDERAD--REDIEVRVVGSGAKMDPECVE--------------EV-------------VLD 53 (276)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHC--CCCCEEEEECCCCCCCHHHHH--------------HH-------------HHH
T ss_conf 5888974452159999998776523--468649995266667988899--------------99-------------999
Q ss_pred HCCCCCCCEEEEE
Q ss_conf 1001288868985
Q gi|254780767|r 83 LIVSSKPDVLLIV 95 (383)
Q Consensus 83 ~i~~~~Pd~vi~i 95 (383)
.+++++||.+|.|
T Consensus 54 ~l~~~~pDf~i~i 66 (276)
T pfam01993 54 MLEEFEPDFVIYI 66 (276)
T ss_pred HHHHHCCCEEEEE
T ss_conf 9986189989997
No 374
>pfam09861 DUF2088 Uncharacterized conserved protein (DUF2088). This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=35.15 E-value=32 Score=14.83 Aligned_cols=57 Identities=14% Similarity=0.150 Sum_probs=34.5
Q ss_pred CCCCEEEEEE-CCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCC---HHHHHHHHHH
Q ss_conf 5565059985-3874301230511189998764027351262016633---6889999996
Q gi|254780767|r 190 SQWKKILLLP-GSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSS---QENLVRCIVS 246 (383)
Q Consensus 190 ~~~~~I~llP-GSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~---~~~~~~~~~~ 246 (383)
+.+++..+.| .+|..--+..+|.+++.+...--+..++.+++++..+ .++.++..+.
T Consensus 53 ~~~~V~Ivv~D~TRp~p~~~il~~ll~~L~~~Gv~~~~I~iv~A~G~Hr~~t~eE~~~~lG 113 (203)
T pfam09861 53 PGEKVVIVVSDITRPTPSDIILPLLLEELNAVGIPDEDITILVATGTHRPMTEEELKKILG 113 (203)
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 9997999957978888567559999999997599812589998268799999899999860
No 375
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=34.94 E-value=26 Score=15.43 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=17.2
Q ss_pred HHHCCCCCCCEEEEECHHHHHHH
Q ss_conf 86100128886898511776579
Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHR 103 (383)
Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~ 103 (383)
...++..+||.+|.||.-+|++.
T Consensus 47 ~~~i~~~~p~~iIiVDA~d~G~~ 69 (156)
T PRK11544 47 IVAIRELRPTRLLIVDATDMGLN 69 (156)
T ss_pred HHHHHCCCCCEEEEEECHHCCCC
T ss_conf 99987018997999971440989
No 376
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=34.90 E-value=32 Score=14.80 Aligned_cols=117 Identities=13% Similarity=0.141 Sum_probs=67.2
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHCCCCEEEE---EECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9997682147899999999997389983999---9717899947880650444531101367466459999999999861
Q gi|254780767|r 7 AVIAGEISGDLLAGDLIKSLKEMVSYPINLV---GVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVEL 83 (383)
Q Consensus 7 ~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~---giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~ 83 (383)
+.+.|.+.-|. ..++++|++ ++++.+. -+||- +.++ |..++..=-.-.+..+.+++.
T Consensus 44 ~~~~g~~d~d~---~~l~~lk~~-~~~~kilPri~~~gw-----------~~~~-----~~~~ls~~~~R~~~i~~iv~~ 103 (318)
T cd02876 44 FVIEGTHDIDK---GWIEEVRKA-NKNIKILPRVLFEGW-----------SYQD-----LQSLLNDEQEREKLIKLLVTT 103 (318)
T ss_pred EECCCCCCCCH---HHHHHHHHH-CCCCEEEEEEEECCC-----------CHHH-----HHHHHCCHHHHHHHHHHHHHH
T ss_conf 44268542266---899999971-998679888856798-----------8789-----999963999999999999999
Q ss_pred CCCCCCCEEEEECH---H-------------HHHHHHHHHHHHHCCCCCCEEEECCCCCCCC------CCCHHHHHHHHH
Q ss_conf 00128886898511---7-------------7657999986630134631111002211003------663557999998
Q gi|254780767|r 84 IVSSKPDVLLIVDN---P-------------DFTHRVAKRVRKKMPNLPIINYVCPSVWAWR------EGRARKMCAYIN 141 (383)
Q Consensus 84 i~~~~Pd~vi~iD~---p-------------gFnl~lak~lkk~~~~ipvi~yv~PqvWAWr------~~R~k~~~~~~d 141 (383)
++++.-|-+.+ |+ | .|-..+++.+++. |..++.-|+|..-+.. +.-.+.+.+++|
T Consensus 104 ~~~~gfDGidi-D~w~~~~~~~~~~~~~~~~~fv~el~~~l~~~--g~~l~l~vp~~~~~~~~~~~~~~~d~~~l~~~vD 180 (318)
T cd02876 104 AKKNHFDGIVL-EVWSQLAAYGVPDKRKELIQLVIHLGETLHSA--NLKLILVIPPPREKGNQNGLFTRKDFEKLAPHVD 180 (318)
T ss_pred HHHHCCCCEEE-ECCHHCCCCCCHHHHHHHHHHHHHHHHHHHHC--CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99819985888-23100143368768999999999999999865--9889999836756555656554542999986422
Q ss_pred HHCCC
Q ss_conf 64015
Q gi|254780767|r 142 QVISI 146 (383)
Q Consensus 142 ~~~~i 146 (383)
.+...
T Consensus 181 ~v~lM 185 (318)
T cd02876 181 GFSLM 185 (318)
T ss_pred EEEEE
T ss_conf 46786
No 377
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=34.77 E-value=32 Score=14.79 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=27.6
Q ss_pred HCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 1001288868985117765799998663013463111100
Q gi|254780767|r 83 LIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVC 122 (383)
Q Consensus 83 ~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~ 122 (383)
.+.+.+.+++|+--+.+-...++..+.+. ++|++...+
T Consensus 61 ~l~~~~v~~iiG~~~s~~~~~~~~~~~~~--~ip~i~~~~ 98 (298)
T cd06268 61 ELVDDGVDAVIGPLSSGVALAAAPVAEEA--GVPLISPGA 98 (298)
T ss_pred HHHCCCCEEEECCCCHHHHHHHHHHHHHC--CCEEEECCC
T ss_conf 86327973997477578889999999871--921880575
No 378
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=34.68 E-value=32 Score=14.78 Aligned_cols=84 Identities=17% Similarity=0.173 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC--------CCCCCHHHHHHHHHHHC
Q ss_conf 9999999986100128886898511776579999866301346311110022110--------03663557999998640
Q gi|254780767|r 73 FIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWA--------WREGRARKMCAYINQVI 144 (383)
Q Consensus 73 ~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWA--------Wr~~R~k~~~~~~d~~~ 144 (383)
-..-++++++....+...++-=||.||-.....+.-... +.....+..++.|. =++.--..+++.+|.+.
T Consensus 66 T~~d~~eiv~yA~~rgI~ViPEiD~PgHs~a~~~~yPel--~~~~~~~~~~~~~~~~~~~L~p~~~~ty~fl~~vl~Ev~ 143 (311)
T cd06570 66 TQEQIREVVAYARDRGIRVVPEIDVPGHASAIAVAYPEL--ASGPGPYVIERGWGVFEPLLDPTNEETYTFLDNLFGEMA 143 (311)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCHHH--CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 899999999999985998965333741479999869885--478887665667786672236898899999999999999
Q ss_pred CCCCCCHHHHHCCCCCC
Q ss_conf 15677422320025531
Q gi|254780767|r 145 SILPFEKEVMQRLGGPP 161 (383)
Q Consensus 145 ~ifpFE~~~f~k~~~~~ 161 (383)
.+||.+ +| -.+|=+
T Consensus 144 ~lFp~~--y~-HiGGDE 157 (311)
T cd06570 144 ELFPDE--YF-HIGGDE 157 (311)
T ss_pred HHCCCC--EE-EECCCC
T ss_conf 857864--15-645754
No 379
>pfam01975 SurE Survival protein SurE. E. coli cells with the surE gene disrupted are found to survive poorly in stationary phase. It is suggested that SurE may be involved in stress response. Yeast also contains a member of the family. A sequence from Yarrowia lipolytica can complement a mutation in acid phosphatase, suggesting that members of this family could be phosphatases.
Probab=34.57 E-value=25 Score=15.54 Aligned_cols=21 Identities=48% Similarity=0.741 Sum_probs=17.2
Q ss_pred HCCCHHH--HHHHHHHCCCEEEE
Q ss_conf 2331156--68887627530254
Q gi|254780767|r 272 MAASGTV--ILELALCGIPVVSI 292 (383)
Q Consensus 272 i~~SGTa--TLE~al~g~P~IV~ 292 (383)
+.-|||+ .+|++++|+|.|-+
T Consensus 103 v~ySGTVgAA~Ea~~~GipsIA~ 125 (190)
T pfam01975 103 VLYSGTVGAAMEAALLGIPSIAV 125 (190)
T ss_pred EECHHHHHHHHHHHHCCCCEEEE
T ss_conf 75257778899999759986999
No 380
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=34.44 E-value=33 Score=14.75 Aligned_cols=89 Identities=15% Similarity=0.198 Sum_probs=39.0
Q ss_pred EEECCCCHHHH--HHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHH-HHHHHHHHHHHHHHHHC
Q ss_conf 99768214789--9999999997389983999971789994788065044453110136746-64599999999998610
Q gi|254780767|r 8 VIAGEISGDLL--AGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVV-RHLPQFIFRINQTVELI 84 (383)
Q Consensus 8 i~aGE~SGD~~--~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl-~~~~~~~~~~~~~~~~i 84 (383)
++.|-+.||.| |.++++.+-+.. +++...+|-+.-.++=++. ..-++..++|++-.+ .+++.+++..+.+.+.
T Consensus 2 vvi~~v~gD~H~iG~~iv~~~l~~~--G~~V~~lG~~vp~e~~v~~-a~~~~~d~I~lS~~~~~~~~~~~~~i~~l~~~- 77 (119)
T cd02067 2 VVIATVGGDGHDIGKNIVARALRDA--GFEVIDLGVDVPPEEIVEA-AKEEDADAIGLSGLLTTHMTLMKEVIEELKEA- 77 (119)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHC--CCEEEECCCCCCHHHHHHH-HHHCCCCEEEEECCCCCCHHHHHHHHHHHHHC-
T ss_conf 8999639856778999999999978--9989989999999999999-99709999999622024268999999999976-
Q ss_pred CCCCCCEEEEECHHHHHH
Q ss_conf 012888689851177657
Q gi|254780767|r 85 VSSKPDVLLIVDNPDFTH 102 (383)
Q Consensus 85 ~~~~Pd~vi~iD~pgFnl 102 (383)
..+|+-|+|=-.-||.
T Consensus 78 --g~~~i~v~vGG~~~~~ 93 (119)
T cd02067 78 --GLDDIPVLVGGAIVTR 93 (119)
T ss_pred --CCCCCEEEEECCCCCH
T ss_conf --9999859998998974
No 381
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=34.36 E-value=33 Score=14.74 Aligned_cols=121 Identities=17% Similarity=0.222 Sum_probs=67.1
Q ss_pred CCCCEEEEEECCCCHHHHHHHH-HHHHHHH-CCCCEEEEEECCHH-----HHHCCCEEEE----CHH--------HCCEE
Q ss_conf 9874599997682147899999-9999973-89983999971789-----9947880650----444--------53110
Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDL-IKSLKEM-VSYPINLVGVGGPS-----LQKEGLVSLF----DFS--------ELSVI 61 (383)
Q Consensus 1 m~~mki~i~aGE~SGD~~~a~l-i~~Lk~~-~~~~~~~~giGG~~-----m~~~G~~~~~----~~~--------~l~v~ 61 (383)
|.+-+|.|+.||++| .|-.+ +++|.+. .....++.=+|.++ ++..|++.-+ +.+ .+.+.
T Consensus 2 m~Kp~IaIT~GDPaG--IGpEIilKal~~~~~~~~~~~viigd~~~l~~~~~~lg~~~~~~~i~~~~~~~~~~~~~i~v~ 79 (334)
T PRK00232 2 MMKPRIAITPGDPAG--IGPELIAKLLAQPDVRWPAHLVVIADRALLEERAAILGLPLDLRPYSPDAPAAPQAAGTLTLL 79 (334)
T ss_pred CCCCCEEEECCCCCH--HHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHCCCCCCEEEECCHHHHHHCCCCCCEEE
T ss_conf 999828996888635--389999999848130489888999889999999998599970687377455443458982598
Q ss_pred ------------EHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE------------ECHHHHHHHHHHHHHHHCCCCCC
Q ss_conf ------------136746645999999999986100128886898------------51177657999986630134631
Q gi|254780767|r 62 ------------GIMQVVRHLPQFIFRINQTVELIVSSKPDVLLI------------VDNPDFTHRVAKRVRKKMPNLPI 117 (383)
Q Consensus 62 ------------G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~------------iD~pgFnl~lak~lkk~~~~ipv 117 (383)
|-.. -.+=......++..++.+++.+.|++|+ .+|||-.--||+..... -++
T Consensus 80 ~~~~~~~~~v~~G~~s-~~~g~~~~~~i~~Av~~~~~g~~~alVT~PInK~~i~~aG~~f~GHTE~La~~~~~~---~~~ 155 (334)
T PRK00232 80 DVDLLDPADVPFGQLS-AANGHYVLETLARALDLALAGEFDAICTAPVNKGAINAAGIPFSGHTEFFAELSGTT---GVV 155 (334)
T ss_pred ECCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCC---CCE
T ss_conf 5676753457889868-899999999999999999759977898777578999857999898799999986899---806
Q ss_pred EEEECCCCCC
Q ss_conf 1110022110
Q gi|254780767|r 118 INYVCPSVWA 127 (383)
Q Consensus 118 i~yv~PqvWA 127 (383)
.-+.+..+|.
T Consensus 156 Mml~~~~L~V 165 (334)
T PRK00232 156 MMLATEELRV 165 (334)
T ss_pred EEEECCCEEE
T ss_conf 8897387069
No 382
>TIGR00603 rad25 DNA repair helicase rad25; InterPro: IPR001161 Xeroderma pigmentosum (XP) is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. People's skin cells with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-G is one of the most rare and phenotypically heterogeneous of XP, showing anything from slight to extreme dysfunction in DNA excision repair , . XP-G can be corrected by a 133 Kd nuclear protein, XPGC . XPGC is an acidic protein that confers normal UV resistance in expressing cells . It is a magnesium-dependent, single-strand DNA endonuclease that makes structure-specific endonucleolytic incisions in a DNA substrate containing a duplex region and single-stranded arms , . XPGC cleaves one strand of the duplex at the border with the single-stranded region . XPG belongs to a family of proteins that includes RAD2 from Saccharomyces cerevisiae (Baker's yeast) and rad13 from Schizosaccharomyces pombe (Fission yeast), which are single-stranded DNA endonucleases , ; mouse and human FEN-1, a structure-specific endonuclease; RAD2 from fission yeast and RAD27 from budding yeast; fission yeast exo1, a 5'-3' double-stranded DNA exonuclease that may act in a pathway that corrects mismatched base pairs; yeast DHS1, and yeast DIN7. Sequence alignment of this family of proteins reveals that similarities are largely confined to two regions. The first is located at the N-terminal extremity (N-region) and corresponds to the first 95 to 105 amino acids. The second region is internal (I-region) and found towards the C-terminus; it spans about 140 residues and contains a highly conserved core of 27 amino acids that includes a conserved pentapeptide (E-A-[DE]-A-[QS]). It is possible that the conserved acidic residues are involved in the catalytic mechanism of DNA excision repair in XPG. The amino acids linking the N- and I-regions are not conserved. This entry represents XP group B (XP-B) give rise to both XP and Cockayne syndrome . The DNA/RNA helicase domain IPR001650 from INTERPRO is also present in this group of proteins.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006289 nucleotide-excision repair, 0005634 nucleus.
Probab=34.05 E-value=13 Score=17.45 Aligned_cols=99 Identities=17% Similarity=0.155 Sum_probs=54.7
Q ss_pred HHHHHHCCCCCCCEEE-EECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHC
Q ss_conf 9998610012888689-851177657999986630134631111002211003663557999998640156774223200
Q gi|254780767|r 78 NQTVELIVSSKPDVLL-IVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQR 156 (383)
Q Consensus 78 ~~~~~~i~~~~Pd~vi-~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k 156 (383)
.-+++.=...+=|-+| +=|.- +-|-+|+.|. |-|.||=-.||- -|.+- |--|- | +
T Consensus 502 qFLI~fHE~~RgDKIIVFsDNV---fAL~~YA~kl--~KpfIYGpTsq~-----ER~~I--------L~nF~-----~-n 557 (756)
T TIGR00603 502 QFLIRFHERQRGDKIIVFSDNV---FALKEYAIKL--GKPFIYGPTSQQ-----ERMQI--------LQNFK-----H-N 557 (756)
T ss_pred HHHHHHHHHCCCCEEEEECCHH---HHHHHHHHHC--CCCEEECCCCHH-----HHHHH--------HHHCC-----C-C
T ss_conf 8988885414888589942447---8999999873--896540798713-----79999--------86215-----5-8
Q ss_pred CCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCE--EEEEECCCCCCHHHHCCCHH
Q ss_conf 25531476388211221001355888976187655650--59985387430123051118
Q gi|254780767|r 157 LGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKK--ILLLPGSRAQEIYKILPFFE 214 (383)
Q Consensus 157 ~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~--I~llPGSR~~EI~~~lP~~l 214 (383)
..|+|.|+-= ..|. + .++++..-+ |.-=.|||+||-.|+-.++-
T Consensus 558 -~~vnTIF~SK-VGDt-S-----------iDlPEAnvlIQiSSH~GSRRQEAQRLGRILR 603 (756)
T TIGR00603 558 -PKVNTIFLSK-VGDT-S-----------IDLPEANVLIQISSHYGSRRQEAQRLGRILR 603 (756)
T ss_pred -CCCCEEEEEE-ECCC-C-----------CCCCCCCEEEEEEECCCCHHHHHHHCCCCCC
T ss_conf -8645689843-0277-5-----------1422142677653267740368764132016
No 383
>pfam02603 Hpr_kinase_N HPr Serine kinase N terminus. This family represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phospho-relay system in control of carbon catabolic repression in bacteria. This kinase in unusual in that it recognizes the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains.
Probab=34.01 E-value=33 Score=14.71 Aligned_cols=79 Identities=18% Similarity=0.359 Sum_probs=46.8
Q ss_pred EEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHH--HHHHHHHHHHHHHHHHCCCCCCCEEEEEC---HHHHHHHHHHHH
Q ss_conf 3999971789994788065044453110136746--64599999999998610012888689851---177657999986
Q gi|254780767|r 34 INLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVV--RHLPQFIFRINQTVELIVSSKPDVLLIVD---NPDFTHRVAKRV 108 (383)
Q Consensus 34 ~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl--~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD---~pgFnl~lak~l 108 (383)
+.-..+--|.++=+|.-..++.+.+.++|-.|.- .+++. ....+..+.+.+.+|-++|+-+ -|..=+.+|++
T Consensus 27 I~~~~i~RPGL~LaG~~~~~~~~RIQi~G~~E~~yl~~l~~--e~r~~~l~~l~~~~~P~iIvt~~~~~p~~l~~~a~~- 103 (127)
T pfam02603 27 ITTSDINRPGLELAGYFDYFPPERVQILGKTELSYLDQLTE--EERKERLEKLFSYDTPCLIVTRGLEPPEELLEAAKK- 103 (127)
T ss_pred ECCCCCCCHHHHHCCCCCCCCCCEEEEECHHHHHHHHHCCH--HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH-
T ss_conf 44656677569875876457987599985799999996999--999999999857599889997999999999999999-
Q ss_pred HHHCCCCCCEE
Q ss_conf 63013463111
Q gi|254780767|r 109 RKKMPNLPIIN 119 (383)
Q Consensus 109 kk~~~~ipvi~ 119 (383)
+++|++.
T Consensus 104 ----~~vPll~ 110 (127)
T pfam02603 104 ----YGIPLLR 110 (127)
T ss_pred ----HCCCEEE
T ss_conf ----7995798
No 384
>KOG1602 consensus
Probab=33.94 E-value=33 Score=14.70 Aligned_cols=61 Identities=10% Similarity=0.149 Sum_probs=32.1
Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCCCCCCH--HHHHHHHHHHCCCCCCCHHHHHCCCCCCEEECCC
Q ss_conf 999866301346311110022110036635--5799999864015677422320025531476388
Q gi|254780767|r 104 VAKRVRKKMPNLPIINYVCPSVWAWREGRA--RKMCAYINQVISILPFEKEVMQRLGGPPTTFVGH 167 (383)
Q Consensus 104 lak~lkk~~~~ipvi~yv~PqvWAWr~~R~--k~~~~~~d~~~~ifpFE~~~f~k~~~~~~~fVGH 167 (383)
+.+.+++ .||+.+-..|=++=-|++.+. ..+=..+.+=+.-+-+..+.++++ |+...++|+
T Consensus 72 ile~C~~--lGI~~vT~fAFSieNFkRs~eEVd~LM~L~~~k~~~~~~~~~~~~~~-gvririiGd 134 (271)
T KOG1602 72 ILELCKE--LGIKEVTVFAFSIENFKRSPEEVDGLMDLALEKIERLLEQGEKLDKY-GVRIRVIGD 134 (271)
T ss_pred HHHHHHH--CCCCEEEEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEECC
T ss_conf 9999997--19727998987566407988999999999999999888876667662-707999766
No 385
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=33.93 E-value=23 Score=15.73 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=15.6
Q ss_pred CCCCCEEEEECHHHHH--------HHHHHHHHHHCCCCCCE
Q ss_conf 1288868985117765--------79999866301346311
Q gi|254780767|r 86 SSKPDVLLIVDNPDFT--------HRVAKRVRKKMPNLPII 118 (383)
Q Consensus 86 ~~~Pd~vi~iD~pgFn--------l~lak~lkk~~~~ipvi 118 (383)
+.+||+||-==.-|=| =-+|..+-....|||-|
T Consensus 81 ~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsI 121 (252)
T COG0496 81 EPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAI 121 (252)
T ss_pred CCCCCEEEECCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCE
T ss_conf 78999899676478865511342014999999987296423
No 386
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=33.59 E-value=34 Score=14.66 Aligned_cols=115 Identities=24% Similarity=0.456 Sum_probs=61.1
Q ss_pred EEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99768214789999999999738998399997178999478806504445311013674664599999999998610012
Q gi|254780767|r 8 VIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELIVSS 87 (383)
Q Consensus 8 i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i~~~ 87 (383)
++.|..-++-.|..|.+.+.+ .+++.+.-.+ ..+.|+..- .+++ -..++.+.+.+.
T Consensus 3 lv~GDSl~~gl~~~l~~~l~~--~~~i~~~~~s---~~stGL~r~---------~~~d----------W~~~~~~~~~~~ 58 (200)
T cd01829 3 LVIGDSLAQGLAPGLLRALAD--NPGIRVINRS---KGSSGLVRP---------DFFD----------WPEKLKELIAEE 58 (200)
T ss_pred EEEECHHHHHHHHHHHHHHHC--CCCEEEEECC---CCCCCCCCC---------CCCC----------HHHHHHHHHHCC
T ss_conf 999131888789999998521--6982999877---457686679---------8578----------799999987457
Q ss_pred CCCEEEEE----CHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEE
Q ss_conf 88868985----11776579999866301346311110022110036635579999986401567742232002553147
Q gi|254780767|r 88 KPDVLLIV----DNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQRLGGPPTT 163 (383)
Q Consensus 88 ~Pd~vi~i----D~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~~~~ 163 (383)
+||+||.. |..++-- +-..+++-+|. |.+ ...+-++.++.+ ... +|.++.
T Consensus 59 ~pd~vVv~lG~ND~~~~~~-----------~~~~~~~~s~~---W~~----~Y~~rv~~~l~~-------~~~-~g~~Vi 112 (200)
T cd01829 59 KPDVVVVFLGANDRQDIRD-----------GDGYLKFGSPE---WEE----EYRQRIDELLNV-------ARA-KGVPVI 112 (200)
T ss_pred CCCEEEEEECCCCCCCCCC-----------CCCEEECCCHH---HHH----HHHHHHHHHHHH-------HHH-CCCEEE
T ss_conf 9998999954777744207-----------99504349847---999----999999999999-------974-598299
Q ss_pred ECCCCCCCC
Q ss_conf 638821122
Q gi|254780767|r 164 FVGHPLSSS 172 (383)
Q Consensus 164 fVGHPl~d~ 172 (383)
|+|=|.+..
T Consensus 113 WvglP~~r~ 121 (200)
T cd01829 113 WVGLPAMRS 121 (200)
T ss_pred EEECCCCCC
T ss_conf 983897586
No 387
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=33.42 E-value=34 Score=14.65 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=18.1
Q ss_pred HHHHCCCCCCCEEEEECHHHH-HHHHHHHHHHHCCCCCCEEEECCCC
Q ss_conf 986100128886898511776-5799998663013463111100221
Q gi|254780767|r 80 TVELIVSSKPDVLLIVDNPDF-THRVAKRVRKKMPNLPIINYVCPSV 125 (383)
Q Consensus 80 ~~~~i~~~~Pd~vi~iD~pgF-nl~lak~lkk~~~~ipvi~yv~Pqv 125 (383)
..+.+++..-|.++..|-|=- .-.+.+.+++. |+..|..|+|+-
T Consensus 114 F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~--gi~~I~lvaPtt 158 (265)
T COG0159 114 FLRRAKEAGVDGLLVPDLPPEESDELLKAAEKH--GIDPIFLVAPTT 158 (265)
T ss_pred HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC--CCCEEEEECCCC
T ss_conf 999999759987985789866777899999976--986798869999
No 388
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=33.18 E-value=34 Score=14.62 Aligned_cols=44 Identities=20% Similarity=0.350 Sum_probs=21.0
Q ss_pred HHHHHHHHHCCCCCCCEEEEE--------CHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 999999861001288868985--------117765799998663013463111
Q gi|254780767|r 75 FRINQTVELIVSSKPDVLLIV--------DNPDFTHRVAKRVRKKMPNLPIIN 119 (383)
Q Consensus 75 ~~~~~~~~~i~~~~Pd~vi~i--------D~pgFnl~lak~lkk~~~~ipvi~ 119 (383)
...+.+.+.+.+++|+.+|.= .++...-.+++.+++. +++|+++
T Consensus 38 ~~~~~l~~~i~~~~~~~iviG~P~~~~g~~~~~~~~~f~~~l~~~-~~i~v~~ 89 (99)
T smart00732 38 ADAARLKKLIKKYQPDLIVIGLPLNMNGTASRETEEAFAELLKER-FNLPVVL 89 (99)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHC-CCCCEEE
T ss_conf 999999999998499889974752489981999999999998517-8998899
No 389
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=33.07 E-value=34 Score=14.61 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=19.5
Q ss_pred HHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 61001288868985117765799998663013463111
Q gi|254780767|r 82 ELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIIN 119 (383)
Q Consensus 82 ~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~ 119 (383)
...++.+-=.|+-+|.++=-+++++.|=+- |++.|-
T Consensus 8 ~~l~~~~vI~Vlr~~~~e~a~~~a~Ali~g--Gi~~IE 43 (211)
T COG0800 8 SKLKAQPVVPVIRGDDVEEALPLAKALIEG--GIPAIE 43 (211)
T ss_pred HHHHHCCEEEEEEECCHHHHHHHHHHHHHC--CCCEEE
T ss_conf 999878844899708999999999999976--987699
No 390
>cd07365 MhpB_like Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate. 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB) catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate, yielding the product 2-hydroxy-6-oxo-nona-2,4-diene 1,9-dicarboxylate. It is an essential enzyme in the beta-phenylpropionic degradation pathway, in which beta-phenylpropionic is first hydrolyzed to produce 2,3-dihydroxyphenylpropionate. The enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the ca
Probab=32.93 E-value=34 Score=14.59 Aligned_cols=47 Identities=6% Similarity=0.223 Sum_probs=31.1
Q ss_pred HHCCEEEHHHHHHH-HHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHH
Q ss_conf 45311013674664-599999999998610012888689851177657
Q gi|254780767|r 56 SELSVIGIMQVVRH-LPQFIFRINQTVELIVSSKPDVLLIVDNPDFTH 102 (383)
Q Consensus 56 ~~l~v~G~~evl~~-~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl 102 (383)
++-..+|+.++=.. .-.+...+.++.+.+.+.+||++|.+-.=.||-
T Consensus 9 SHsPl~g~~dp~~~~~~~v~~a~~~~r~~l~~~~PDvvVv~~~DH~~~ 56 (310)
T cd07365 9 SHSPLLGFNDPAPEVVAEVDAAFAAARAFVAAFDPELVVLFAPDHYNG 56 (310)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
T ss_conf 677635899988899999999999999999984999999986238877
No 391
>COG0417 PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair]
Probab=32.78 E-value=35 Score=14.58 Aligned_cols=43 Identities=26% Similarity=0.423 Sum_probs=33.8
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECHHHHHHH-HHHHHHHHCCCCCCE
Q ss_conf 999999986100128886898511776579-999866301346311
Q gi|254780767|r 74 IFRINQTVELIVSSKPDVLLIVDNPDFTHR-VAKRVRKKMPNLPII 118 (383)
Q Consensus 74 ~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~-lak~lkk~~~~ipvi 118 (383)
...+....+.++...||++++=+..+|-++ |++++++. |+|..
T Consensus 212 ~e~l~~~~~~i~~~dPdVIvgyn~~~fd~pyl~~Ra~~l--gi~~~ 255 (792)
T COG0417 212 AELLERFVELIREYDPDVIVGYNGDNFDWPYLAERAERL--GIPLR 255 (792)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH--CCCCC
T ss_conf 999999999985029899998367777738999999981--99851
No 392
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.43 E-value=35 Score=14.54 Aligned_cols=39 Identities=18% Similarity=0.474 Sum_probs=25.4
Q ss_pred HHHHHHCCCCCCCEEEE--ECHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 99986100128886898--5117765799998663013463111
Q gi|254780767|r 78 NQTVELIVSSKPDVLLI--VDNPDFTHRVAKRVRKKMPNLPIIN 119 (383)
Q Consensus 78 ~~~~~~i~~~~Pd~vi~--iD~pgFnl~lak~lkk~~~~ipvi~ 119 (383)
...++.....+||.+|+ +|.....=.+... ++. |||++-
T Consensus 46 ~~~i~~ai~~k~D~Iii~~~D~~~~~~~l~~A-~~a--gIPvv~ 86 (280)
T cd06315 46 AAALNQAIALKPDGIVLGGVDAAELQAELELA-QKA--GIPVVG 86 (280)
T ss_pred HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH-HHC--CCCEEE
T ss_conf 99999999639999999982978878999999-987--997896
No 393
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=32.41 E-value=35 Score=14.54 Aligned_cols=93 Identities=19% Similarity=0.268 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHH-HCCCCEEEEEECCHHHHH-------CCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 7899999999997-389983999971789994-------78806504445311013674664599999999998610012
Q gi|254780767|r 16 DLLAGDLIKSLKE-MVSYPINLVGVGGPSLQK-------EGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELIVSS 87 (383)
Q Consensus 16 D~~~a~li~~Lk~-~~~~~~~~~giGG~~m~~-------~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i~~~ 87 (383)
|.+|-...-.||. .....+....+|+++-++ -|.+.-+.+++-+.-|. +++ -..+-+...+++.
T Consensus 39 D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a~~~lr~aLAmGaDraili~d~~~~~~-d~~-------~ta~~Laa~~~~~ 110 (260)
T COG2086 39 DLNAVEEALRLKEKGYGGEVTVLTMGPPQAEEALREALAMGADRAILITDRAFAGA-DPL-------ATAKALAAAVKKI 110 (260)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCC-CHH-------HHHHHHHHHHHHC
T ss_conf 07999999986146888669999946453399999998548875999703223675-589-------9999999999874
Q ss_pred CCCEEEE----ECHH--HHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 8886898----5117--76579999866301346311110
Q gi|254780767|r 88 KPDVLLI----VDNP--DFTHRVAKRVRKKMPNLPIINYV 121 (383)
Q Consensus 88 ~Pd~vi~----iD~p--gFnl~lak~lkk~~~~ipvi~yv 121 (383)
+||+|++ +|+- ---..+|..| |.|.+.|+
T Consensus 111 ~~~LVl~G~qa~D~~t~qvg~~lAe~L-----g~P~~t~v 145 (260)
T COG2086 111 GPDLVLTGKQAIDGDTGQVGPLLAELL-----GWPQVTYV 145 (260)
T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHH-----CCCEEEEE
T ss_conf 998899813443576466589999986-----98505337
No 394
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=32.40 E-value=35 Score=14.54 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=30.3
Q ss_pred HHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 999861001288868985117765799998663013463111100
Q gi|254780767|r 78 NQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVC 122 (383)
Q Consensus 78 ~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~ 122 (383)
....+.+.+.+.+++++--+.+-.+.++..+.+. ++|++...+
T Consensus 57 ~~a~~Lv~~d~V~aviG~~~S~~~~a~~~~~~~~--~vp~is~~a 99 (334)
T cd06347 57 NAATRLIDQDKVVAIIGPVTSGATLAAGPIAEDA--KVPMITPSA 99 (334)
T ss_pred HHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHH--CCEEEECCC
T ss_conf 9999999757977997678568789889999971--964871377
No 395
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=32.08 E-value=36 Score=14.50 Aligned_cols=125 Identities=15% Similarity=0.127 Sum_probs=64.0
Q ss_pred HHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 99999986100128886898511776579999866301346311110022110036635579999986401567742232
Q gi|254780767|r 75 FRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEVM 154 (383)
Q Consensus 75 ~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f 154 (383)
....++.+.+...+||+++.|-.| .|..+.++.-+||++|-..|--=+|+= + +=+
T Consensus 75 ~~a~~iarql~~~~~dviv~i~tp-----~Aq~~~s~~~~iPVV~aavtd~v~a~L-----------------v---~~~ 129 (322)
T COG2984 75 GTAAQIARQLVGDKPDVIVAIATP-----AAQALVSATKTIPVVFAAVTDPVGAKL-----------------V---KSL 129 (322)
T ss_pred HHHHHHHHHHHCCCCCEEEECCCH-----HHHHHHHHCCCCCEEEECCCCHHHCCC-----------------C---CCC
T ss_conf 789999999614799679961778-----999999846798879972576332358-----------------7---644
Q ss_pred HCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 00255314763882112210013558889761876556505998538743012305111899987640273512620166
Q gi|254780767|r 155 QRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTV 234 (383)
Q Consensus 155 ~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~~ 234 (383)
++ .|-+++=|-.+. +....-+..+ .+-++-+.|+++=.|-..--.. .++-.++..++. ++..+-..+
T Consensus 130 ~~-pg~NvTGvsD~~-----~v~q~i~lik--~~~Pnak~Igv~Y~p~E~ns~~----l~eelk~~A~~~-Gl~vve~~v 196 (322)
T COG2984 130 EQ-PGGNVTGVSDLL-----PVAQQIELIK--ALLPNAKSIGVLYNPGEANSVS----LVEELKKEARKA-GLEVVEAAV 196 (322)
T ss_pred CC-CCCCEEECCCCC-----HHHHHHHHHH--HHCCCCEEEEEEECCCCCCCHH----HHHHHHHHHHHC-CCEEEEEEC
T ss_conf 47-888436237751-----6999999999--8678870699995798866089----999999999877-988999834
Q ss_pred CCH
Q ss_conf 336
Q gi|254780767|r 235 SSQ 237 (383)
Q Consensus 235 ~~~ 237 (383)
++.
T Consensus 197 ~~~ 199 (322)
T COG2984 197 TSV 199 (322)
T ss_pred CCC
T ss_conf 763
No 396
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=31.91 E-value=36 Score=14.49 Aligned_cols=96 Identities=15% Similarity=0.181 Sum_probs=48.8
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45999976821478999999999973899839999717899947880650444531101367466459999999999861
Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVEL 83 (383)
Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~ 83 (383)
|+|+|..+.. +..++++||+. ..+.++.|.-=+. .+.|.. +.| +.-++ +.... -...+.+.+.
T Consensus 2 ~nILvt~~G~-----~~~ii~~lk~~-~~~~~Vi~~D~~~-~a~~~~-~aD--~~y~~------P~~~d-~~y~~~ll~i 64 (325)
T PRK12767 2 MNILVTSAGR-----RVQLVKALKKS-LLGGKVIGADISP-LAPALY-FAD--KFYVV------PKVTD-PNYIDALLDI 64 (325)
T ss_pred CEEEEECCCC-----HHHHHHHHHHC-CCCCEEEEECCCC-CCCCHH-HCC--EEEEC------CCCCC-HHHHHHHHHH
T ss_conf 4899986786-----89999999976-9985999968998-995344-548--89987------88898-7899999999
Q ss_pred CCCCCCCEEEEE-CHHHHHH-HHHHHHHHHCCCCCCE
Q ss_conf 001288868985-1177657-9999866301346311
Q gi|254780767|r 84 IVSSKPDVLLIV-DNPDFTH-RVAKRVRKKMPNLPII 118 (383)
Q Consensus 84 i~~~~Pd~vi~i-D~pgFnl-~lak~lkk~~~~ipvi 118 (383)
++++++|++|-. |-.-.-+ +.+..+.+. |++++
T Consensus 65 ~~~~~id~iiP~~d~El~~la~~~~~l~~~--gi~v~ 99 (325)
T PRK12767 65 CKKENIDALIPLIDPELPLLAQHRDEFKEI--GVKVL 99 (325)
T ss_pred HHHHCCCEEEECCCHHHHHHHHHHHHHHHC--CCEEE
T ss_conf 998799999977850266899999999967--99895
No 397
>COG3911 Predicted ATPase [General function prediction only]
Probab=31.85 E-value=29 Score=15.11 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=21.5
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 98745999976821478999999999973
Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEM 29 (383)
Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~ 29 (383)
||.||+||++|.+.+-. ..|+++|.+.
T Consensus 6 ~nR~~~fIltGgpGaGK--TtLL~aLa~~ 32 (183)
T COG3911 6 FNRHKRFILTGGPGAGK--TTLLAALARA 32 (183)
T ss_pred CCCCEEEEEECCCCCCH--HHHHHHHHHC
T ss_conf 56533899837999768--9999999975
No 398
>pfam04414 tRNA_deacylase D-aminoacyl-tRNA deacylase. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules.
Probab=31.75 E-value=36 Score=14.47 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=8.4
Q ss_pred CCCCHHHHCCCHHH-HHHHHHHCC
Q ss_conf 74301230511189-998764027
Q gi|254780767|r 202 RAQEIYKILPFFES-AVASLVKRN 224 (383)
Q Consensus 202 R~~EI~~~lP~~l~-~~~~l~~~~ 224 (383)
+..++..--|.+.. ..+.|.+..
T Consensus 47 ~~~~~~~~~P~~~~~~l~~l~~~~ 70 (214)
T pfam04414 47 KPGELAIANPRLMTALLRALAKIA 70 (214)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 888578899799999999999857
No 399
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=31.69 E-value=36 Score=14.46 Aligned_cols=96 Identities=8% Similarity=0.137 Sum_probs=50.5
Q ss_pred CEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEECCCCC
Q ss_conf 86898511776579999866301346311110022110036635579999986401567742232002553147638821
Q gi|254780767|r 90 DVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQRLGGPPTTFVGHPL 169 (383)
Q Consensus 90 d~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~~~~fVGHPl 169 (383)
+-||.+-|.-|--.+++.+++. |+|++-. +.....+ +.-.++ |.++.| |..
T Consensus 400 ~~VII~G~GRvGq~var~L~~~--gi~~vvi---------D~d~~~V---------------~~~r~~-G~~v~y-GDa- 450 (615)
T PRK03562 400 PRVIIAGFGRFGQIVGRLLLSS--GVKMVVL---------DHDPDHI---------------ETLRKF-GMKVFY-GDA- 450 (615)
T ss_pred CCEEEEECCCCHHHHHHHHHHC--CCCEEEE---------ECCHHHH---------------HHHHHC-CCEEEE-ECC-
T ss_conf 9989990280469999999978--9987999---------7999999---------------999967-990897-689-
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 12210013558889761876556505998538743012305111899987640273512620
Q gi|254780767|r 170 SSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSL 231 (383)
Q Consensus 170 ~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i 231 (383)
.+.+..+.-|..+.+-.|.-.+....+ .++++...+.+|++..+.
T Consensus 451 --------t~~~vL~~AGi~~Ar~vViaidd~~~~---------~~iv~~~r~~~P~l~Iia 495 (615)
T PRK03562 451 --------TRMDLLESAGAAKAEVLINAIDDPQTN---------LQLTELVKEHFPHLQIIA 495 (615)
T ss_pred --------CCHHHHHHCCCCCCCEEEEEECCHHHH---------HHHHHHHHHHCCCCEEEE
T ss_conf --------999999867914068899994989999---------999999997589986999
No 400
>cd01146 FhuD Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.
Probab=31.45 E-value=36 Score=14.44 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=24.7
Q ss_pred HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 8610012888689851177657999986630134631111002
Q gi|254780767|r 81 VELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCP 123 (383)
Q Consensus 81 ~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~P 123 (383)
.+.|..-+||+||..++ ++-.....|.+. .|++.+-.+
T Consensus 58 ~E~i~~l~PDLIi~~~~--~~~~~~~~L~~i---ap~v~~~~~ 95 (256)
T cd01146 58 LEAIAALKPDLILGSAS--RHDEIYDQLSQI---APTVLLDSS 95 (256)
T ss_pred HHHHHCCCCCEEEECCC--CCHHHHHHHHHH---CCCCCCCCC
T ss_conf 99996089998996487--688899999734---874555688
No 401
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=31.37 E-value=37 Score=14.43 Aligned_cols=16 Identities=50% Similarity=0.337 Sum_probs=8.7
Q ss_pred ECHHHHHHHHHHHHHH
Q ss_conf 5117765799998663
Q gi|254780767|r 95 VDNPDFTHRVAKRVRK 110 (383)
Q Consensus 95 iD~pgFnl~lak~lkk 110 (383)
+|||+|-.++|+.+.+
T Consensus 38 ~DYpd~a~~va~~V~~ 53 (142)
T PRK08621 38 EDFVDSTLAVAKEVNK 53 (142)
T ss_pred CCCHHHHHHHHHHHHC
T ss_conf 8816899999999976
No 402
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=31.12 E-value=13 Score=17.37 Aligned_cols=58 Identities=16% Similarity=0.314 Sum_probs=36.5
Q ss_pred CCCCCCEEEEECHHHHH--H-HHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 01288868985117765--7-99998663013463111100221100366355799999864015677
Q gi|254780767|r 85 VSSKPDVLLIVDNPDFT--H-RVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPF 149 (383)
Q Consensus 85 ~~~~Pd~vi~iD~pgFn--l-~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpF 149 (383)
...+..++|.|++-|.- + ++.+.++++ |+|+|.=.|...-+.-.+| ..-. .+ + ++|-|
T Consensus 118 it~~tkaIi~Vh~~G~~~d~~~i~~i~~~~--~i~vIEDaA~a~Ga~~~g~--~~Gs-~g-~-a~fSF 178 (379)
T PRK11658 118 ITPRTKAIIPVHYAGAPADLDAIRAIGERY--GIPVIEDAAHAVGTYYKGR--HIGA-RG-T-AIFSF 178 (379)
T ss_pred CCCCCEEEEEECCCCCCCCHHHHHHHHHHC--CCEEEECCHHHHCCCCCCC--CCCC-CC-C-EEEEC
T ss_conf 482654999856889866377999999975--9818970835536654798--6676-24-4-57856
No 403
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=30.89 E-value=37 Score=14.38 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=6.1
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 9999999983899
Q gi|254780767|r 355 HGFENLWDRMNTK 367 (383)
Q Consensus 355 ~~~~~~~~~Lg~~ 367 (383)
.-.+++.++|+-.
T Consensus 171 ~h~~~i~~KL~v~ 183 (196)
T PRK10360 171 VHRANLMEKLGVS 183 (196)
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999981999
No 404
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase; InterPro: IPR012733 4-hydroxybenzoate 3-monooxygenase is a flavoprotein that converts its substrate to 3,4-dihydroxybenzoate, which subsequently enters the beta-ketioadipate pathway of aromatic degradation, using molecular oxygen and NADPH as shown below . 4-hydroxybenzoate + NADPH + O(2) = 3,4-dihydroxybenzoate + NADP(+) + H(2)O 4-hydroxybenzoate is an intermediate in the degradation of lignin and other aromatic plant compounds, and this enzyme is found extensively in soil bacteria. This enzyme is a homodimer where each subunit is composed of three distinct domains: an N-terminal flavin-binding domain with a beta-alpha-beta fold, a small substrate-binding domain composed of a single alpha helix and beta-sheet, and a C-terminal helical domain . The active site is found at the interface of all three domains. Catalysis occurs by a two-step reaction. In the first step, flavin is reduced by NADPH. Subsequently, the reduced flavin is oxygenated to a hydroperoxide which transfers the hydroxyl group to the substrate, forming 3,4-dihydroxybenzoate.; GO: 0018659 4-hydroxybenzoate 3-monooxygenase activity, 0050660 FAD binding, 0043639 benzoate catabolic process.
Probab=30.66 E-value=38 Score=14.35 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=19.2
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 987459999768214789999999
Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIK 24 (383)
Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~ 24 (383)
|+. +|.|++|.|||=++|-.|=+
T Consensus 1 MkT-qVaIiG~GPsGLLLGQLLh~ 23 (393)
T TIGR02360 1 MKT-QVAIIGAGPSGLLLGQLLHK 23 (393)
T ss_pred CCE-EEEEECCCHHHHHHHHHHHH
T ss_conf 951-79997577357899999986
No 405
>pfam03310 Cauli_DNA-bind Caulimovirus DNA-binding protein.
Probab=30.62 E-value=38 Score=14.35 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 674664599999999998610012888
Q gi|254780767|r 64 MQVVRHLPQFIFRINQTVELIVSSKPD 90 (383)
Q Consensus 64 ~evl~~~~~~~~~~~~~~~~i~~~~Pd 90 (383)
.|++.....+..-++.+.+.+-..+|+
T Consensus 9 ~~~~~~~k~~~~~i~aiL~~~gs~~p~ 35 (121)
T pfam03310 9 RELIQSQKKTANEIKAILERNGSGKPE 35 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999999999999999994789975
No 406
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=30.49 E-value=38 Score=14.33 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=20.8
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECHHHH
Q ss_conf 999999986100128886898511776
Q gi|254780767|r 74 IFRINQTVELIVSSKPDVLLIVDNPDF 100 (383)
Q Consensus 74 ~~~~~~~~~~i~~~~Pd~vi~iD~pgF 100 (383)
-....++++.|++.+||+||+-|--|-
T Consensus 107 ~eaa~~L~~~ir~~rP~Vvvtyd~~Gg 133 (283)
T TIGR03446 107 EEAAEPLVRVIREFRPHVITTYDENGG 133 (283)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf 999999999999868998994389988
No 407
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=30.38 E-value=38 Score=14.32 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=15.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 59999768214789999999999738998399997178
Q gi|254780767|r 5 KIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGP 42 (383)
Q Consensus 5 ki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~ 42 (383)
++.|+..... |..+++++++....+.++.|+-.+
T Consensus 127 rvlIIG~g~~----~~~l~~~l~~~~~~g~~vvG~~dd 160 (445)
T TIGR03025 127 RVLIVGTGEL----AEELAAALSRNPDLGYRVVGFVDD 160 (445)
T ss_pred EEEEEECCHH----HHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 3999908489----999999998284688489999778
No 408
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=30.26 E-value=38 Score=14.31 Aligned_cols=93 Identities=16% Similarity=0.295 Sum_probs=53.3
Q ss_pred CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHCCCC-EEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHH
Q ss_conf 9874599997-68214789999999999738998-399997178999478806504445311013674664599999999
Q gi|254780767|r 1 MNSLKIAVIA-GEISGDLLAGDLIKSLKEMVSYP-INLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRIN 78 (383)
Q Consensus 1 m~~mki~i~a-GE~SGD~~~a~li~~Lk~~~~~~-~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~ 78 (383)
|++||+.|+- |--.+.. .+..+++. + + ++..++.....+.+. .. -+++.+- ..+.
T Consensus 1 ~~~irvgiiG~G~~~~~~----~~~~~~~~-~-~~~~~vav~d~~~~~a~--~~--a~~~~~~-------------~~~~ 57 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKA----HLPALAAL-G-GGLELVAVVDRDPERAE--AF--AEEFGIA-------------KAYT 57 (342)
T ss_pred CCCCEEEEECCCHHHHHH----HHHHHHHC-C-CCEEEEEEECCCHHHHH--HH--HHHCCCC-------------CCCC
T ss_conf 993279998987678888----89999738-8-74699999649989999--99--9981997-------------4529
Q ss_pred HHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 9986100128886898511776579999866301346311
Q gi|254780767|r 79 QTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPII 118 (383)
Q Consensus 79 ~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi 118 (383)
..-+.+....+|+|+..--+.+|..++..+=+. |.+|+
T Consensus 58 ~~~~ll~~~~iD~V~Iatp~~~H~~~a~~AL~a--GkhVl 95 (342)
T COG0673 58 DLEELLADPDIDAVYIATPNALHAELALAALEA--GKHVL 95 (342)
T ss_pred CHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEE
T ss_conf 999994599998899969806779999999977--99699
No 409
>cd05785 DNA_polB_like2_exo A subfamily of the 3'-5' exonuclease domain of family-B DNA polymerases. This subfamily is composed of uncharacterized bacterial family-B DNA polymerases. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are involved in metal binding and catalysis. The exonuclease domain of family-B DNA polymerases has a fundamental role in proofreading activity. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Family-B DNA polymerases are predominantly involved in DNA replication and DNA repair.
Probab=30.25 E-value=38 Score=14.31 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=30.8
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECHHHHHHH-HHHHHHHHCCCCCC
Q ss_conf 999999986100128886898511776579-99986630134631
Q gi|254780767|r 74 IFRINQTVELIVSSKPDVLLIVDNPDFTHR-VAKRVRKKMPNLPI 117 (383)
Q Consensus 74 ~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~-lak~lkk~~~~ipv 117 (383)
..++....+.+.+..||++++=-.-+|-++ |.+++++. +++.
T Consensus 59 ~~lL~~F~~~i~~~dPDIItGyNi~~FD~pYL~~Ra~~~--~i~~ 101 (207)
T cd05785 59 KELLEELVAIIRERDPDVIEGHNIFRFDLPYLRRRCRRH--GVPL 101 (207)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH--CCCC
T ss_conf 999999999998739999986798775889999999995--9972
No 410
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=30.18 E-value=38 Score=14.30 Aligned_cols=40 Identities=5% Similarity=0.024 Sum_probs=23.7
Q ss_pred HHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 999861001288868985117765799998663013463111
Q gi|254780767|r 78 NQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIIN 119 (383)
Q Consensus 78 ~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~ 119 (383)
....+.+.+.+.+++++--..+-.+.++..+.+. ++|++.
T Consensus 57 ~~a~~Lv~~~~V~~v~G~~~s~~~~a~~~v~~~~--~v~~i~ 96 (340)
T cd06349 57 TIAQKFVADPRIVAVLGDFSSGVSMAASPIYQRA--GLVQLS 96 (340)
T ss_pred HHHHHHHHCCCCEEEECCCCCHHHHHCCHHHHHH--CEEEEC
T ss_conf 9999998659925862686526553101465542--433203
No 411
>COG4378 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.15 E-value=38 Score=14.29 Aligned_cols=32 Identities=16% Similarity=0.376 Sum_probs=21.4
Q ss_pred CCCCCEEEEECHHHHHHH--HHHHHHHHCCCCCCEE
Q ss_conf 128886898511776579--9998663013463111
Q gi|254780767|r 86 SSKPDVLLIVDNPDFTHR--VAKRVRKKMPNLPIIN 119 (383)
Q Consensus 86 ~~~Pd~vi~iD~pgFnl~--lak~lkk~~~~ipvi~ 119 (383)
..---+++++||-+.|+- +-+.++++ +||+.|
T Consensus 43 s~~dlilvLtdf~nHNl~~~iK~eakk~--~ip~~~ 76 (103)
T COG4378 43 SDTDLILVLTDFLNHNLMKKIKNEAKKR--KIPLVC 76 (103)
T ss_pred CCCCEEEEEHHHHCCHHHHHHHHHHHHC--CCCEEE
T ss_conf 9862899885552531899998777624--987698
No 412
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=30.08 E-value=38 Score=14.29 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=9.7
Q ss_pred HHHHHHHHHCCCCCCCEEEEE
Q ss_conf 999999861001288868985
Q gi|254780767|r 75 FRINQTVELIVSSKPDVLLIV 95 (383)
Q Consensus 75 ~~~~~~~~~i~~~~Pd~vi~i 95 (383)
..++.+++.+++..|++.|.+
T Consensus 64 ~~~~~li~~ir~~~P~~~iiv 84 (157)
T cd01833 64 DRLRALIDQMRAANPDVKIIV 84 (157)
T ss_pred HHHHHHHHHHHHHCCCCEEEE
T ss_conf 999999999999789987999
No 413
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=30.02 E-value=38 Score=14.28 Aligned_cols=155 Identities=11% Similarity=0.020 Sum_probs=67.5
Q ss_pred HHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEC-------CCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 9999861001288868985117765799998663013463111100-------221100366355799999864015677
Q gi|254780767|r 77 INQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVC-------PSVWAWREGRARKMCAYINQVISILPF 149 (383)
Q Consensus 77 ~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~-------PqvWAWr~~R~k~~~~~~d~~~~ifpF 149 (383)
.....+.+...+.+++++--+.+..+-++....+ ++|.++-.+ |-+|-++..-.......++
T Consensus 56 ~~~a~kLi~~~~V~aviG~~~S~~~~A~~~~~~~---~vp~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~-------- 124 (333)
T cd06358 56 AAAAARLVDEGGVDAIIGWHTSAVRNAVAPVVAG---RVPYVYTSLYEGGECNPGVFLTGETPEQQLAPAIP-------- 124 (333)
T ss_pred HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHC---CCCEEEECCCCCCCCCCCEEEEECCCHHHHHHHHH--------
T ss_conf 9999999975990899877440778988999976---99389704557888889989971780899999999--------
Q ss_pred CHHHHHCCCCCCEEECCCCCCCC-CCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCE
Q ss_conf 42232002553147638821122-10013558889761876556505998538743012305111899987640273512
Q gi|254780767|r 150 EKEVMQRLGGPPTTFVGHPLSSS-PSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFR 228 (383)
Q Consensus 150 E~~~f~k~~~~~~~fVGHPl~d~-~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~ 228 (383)
|+.+..|.+..++=++=-+. ......-.+..++.|. .++.--. ....-.-|-..+.++....|+..
T Consensus 125 ---~~~~~~g~k~vavi~~d~~~G~~~~~~~~~~~~~~G~----~vv~~~~------~~~~~~Dfs~~l~~i~~~~pD~v 191 (333)
T cd06358 125 ---WLAEEKGARRWYLIGNDYVWPRGSLAAAKRYIAELGG----EVVGEEY------VPLGTTDFTSVLERIAASGADAV 191 (333)
T ss_pred ---HHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCC----EEEEEEE------CCCCCCCHHHHHHHHHHCCCCEE
T ss_conf ---9998379978999926834658899999999997498----5999982------79999789999999997498999
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 6201663368899999960488850552
Q gi|254780767|r 229 FSLVTVSSQENLVRCIVSKWDISPEIII 256 (383)
Q Consensus 229 ~~i~~~~~~~~~~~~~~~~~~~~~~i~~ 256 (383)
+.....+..-.+++ ...+.+....+..
T Consensus 192 ~~~~~~~~~~~~~~-q~~~~G~~~~~~~ 218 (333)
T cd06358 192 LSTLVGQDAVAFNR-QFAAAGLRDRILR 218 (333)
T ss_pred EECCCCCHHHHHHH-HHHHCCCCCCEEE
T ss_conf 99377723999999-9997699987466
No 414
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=29.90 E-value=39 Score=14.27 Aligned_cols=41 Identities=15% Similarity=0.060 Sum_probs=29.1
Q ss_pred HHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 9999861001288868985117765799998663013463111
Q gi|254780767|r 77 INQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIIN 119 (383)
Q Consensus 77 ~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~ 119 (383)
.....+.+.+.+.+++|+--+.+-.+.++..+.+. ++|+++
T Consensus 56 ~~~a~~Li~~d~V~~iiG~~~S~~~~A~~~~~~~~--~vp~i~ 96 (333)
T cd06331 56 AKAARRLIRDDKVDAVFGCYTSASRKAVLPVVERG--RGLLFY 96 (333)
T ss_pred HHHHHHHHHHCCCEEEECCCCCHHHHHHCHHHHHC--CCCEEE
T ss_conf 99999999728964996687607777643078875--997780
No 415
>PRK13372 pcmA protocatechuate 4,5-dioxygenase; Provisional
Probab=29.75 E-value=26 Score=15.42 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 9999999999861001288868985
Q gi|254780767|r 71 PQFIFRINQTVELIVSSKPDVLLIV 95 (383)
Q Consensus 71 ~~~~~~~~~~~~~i~~~~Pd~vi~i 95 (383)
..++.-+.-..+++++.+||++|+|
T Consensus 178 kP~FdGy~p~r~Wl~e~kPDV~ilv 202 (444)
T PRK13372 178 KKLFAGYDLSREWAKEHLPDVIILV 202 (444)
T ss_pred HHHHCCCCHHHHHHHHCCCCEEEEE
T ss_conf 6665278288999986599989999
No 416
>PRK05872 short chain dehydrogenase; Provisional
Probab=29.67 E-value=39 Score=14.24 Aligned_cols=39 Identities=21% Similarity=0.416 Sum_probs=27.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf 599997682147899999999997389983999971789994
Q gi|254780767|r 5 KIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQK 46 (383)
Q Consensus 5 ki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~ 46 (383)
|+.+++|-.|| .|..+.+.|-++ +..+-+.+.-.+.+++
T Consensus 10 KvalITGassG--IG~aiA~~la~~-Ga~Vvl~dr~~~~l~~ 48 (296)
T PRK05872 10 KVVFVTGAARG--VGAELARRLHAR-GAKVALVDLEEAELAA 48 (296)
T ss_pred CEEEEECCCCH--HHHHHHHHHHHC-CCEEEEEECCHHHHHH
T ss_conf 87999271058--999999999987-9989999899999999
No 417
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=29.59 E-value=39 Score=14.23 Aligned_cols=76 Identities=11% Similarity=0.222 Sum_probs=35.1
Q ss_pred CCCCCCEEE-EECHHHHHHH----HHHHHHHH-CCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHC-------------C
Q ss_conf 012888689-8511776579----99986630-134631111002211003663557999998640-------------1
Q gi|254780767|r 85 VSSKPDVLL-IVDNPDFTHR----VAKRVRKK-MPNLPIINYVCPSVWAWREGRARKMCAYINQVI-------------S 145 (383)
Q Consensus 85 ~~~~Pd~vi-~iD~pgFnl~----lak~lkk~-~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~-------------~ 145 (383)
.+.+-+.|| -||+||=..- ++..+++- ..+.||+=|+.-.- ..-...+.-..|.++ .
T Consensus 31 ~d~~vk~ivL~idSpGG~~~~s~ei~~~i~~~k~~~KpV~a~~~~~a----aSg~Y~lAs~ad~I~a~p~s~vGSIGv~~ 106 (208)
T cd07023 31 EDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVA----ASGGYYIAAAADKIVANPTTITGSIGVIG 106 (208)
T ss_pred HCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH----HCHHHHHHHCCCEEEECCCCEECCCCEEE
T ss_conf 08997489999748996299999999999987514985999977711----13345655128779977876333200366
Q ss_pred CCCCCHHHHHCCCCCCEEEC
Q ss_conf 56774223200255314763
Q gi|254780767|r 146 ILPFEKEVMQRLGGPPTTFV 165 (383)
Q Consensus 146 ifpFE~~~f~k~~~~~~~fV 165 (383)
.++|-.+++++. |++.+.+
T Consensus 107 ~~~~~~~~l~k~-Gi~~~~~ 125 (208)
T cd07023 107 QGPNLEELLDKL-GIERDTI 125 (208)
T ss_pred ECCCHHHHHHHC-CCCEEEE
T ss_conf 326889999976-9706999
No 418
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=29.56 E-value=39 Score=14.23 Aligned_cols=45 Identities=7% Similarity=0.043 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 999999998610012888689851177657999986630134631111
Q gi|254780767|r 73 FIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 73 ~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~y 120 (383)
+...-+...+..+..++|.+++|.+.|+-+-.+-... .|+|+++-
T Consensus 35 ~~~iG~~fa~~F~~~~IdkIvTiEasGI~~A~~~A~~---l~vPlV~a 79 (189)
T PRK09219 35 MNEIGKEFARRFKDAGITKILTIEASGIAPAVMAALA---LGVPVVFA 79 (189)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHH---HCCCEEEE
T ss_conf 9999999999845789988999841585789999998---59999999
No 419
>pfam09293 RNaseH_C T4 RNase H, C terminal. Members of this family are found in T4 RNaseH ribonuclease, and adopt a SAM domain-like fold, consisting of a bundle of four/five helices. These residues may have a role in providing a docking site for other proteins or enzymes in the replication fork.
Probab=29.36 E-value=39 Score=14.21 Aligned_cols=69 Identities=12% Similarity=0.126 Sum_probs=26.3
Q ss_pred EEEEHHHCCCCCCCHH----HCCCCCHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 0230244078426124----2054898999999999844989--999999999999998389999899999999986
Q gi|254780767|r 311 CALPNLIVDYPLVPEY----FNSMIRSEALVRWIERLSQDTL--QRRAMLHGFENLWDRMNTKKPAGHMAAEIVLQV 381 (383)
Q Consensus 311 i~LpNii~~~~ivPEl----iQ~~~~~~~i~~~~~~ll~d~~--~r~~~~~~~~~~~~~Lg~~~~a~~~AA~~I~~~ 381 (383)
-|.||+++...++--+ =|.-++.+.|...+.. +++. .-+++..+|.+-+...--..-+.+...+++.++
T Consensus 18 DGIPNiLS~Dd~fvt~veG~RQkPiskKkl~~~~~~--~~~~~~~~~e~~rny~RN~~LIDL~~iP~~i~~~Ii~~y 92 (122)
T pfam09293 18 DGVASIKVRSDYILTRVEGERAPSIRTKELEAIFDR--EDPKVLLTEEEYARYDENRELIDFDFIPDDIADNIIEAY 92 (122)
T ss_pred CCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHCC--CCCCCCCCHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHH
T ss_conf 887874668862321567656898409999999866--884434899999999753777281118499999999998
No 420
>PRK09191 two-component response regulator; Provisional
Probab=29.11 E-value=40 Score=14.18 Aligned_cols=94 Identities=11% Similarity=0.080 Sum_probs=45.9
Q ss_pred CCEEEEECCCCHHHHHHHH---------HHHCCCHHHHHHHHHHCCCEEEECCCC------CCEE--EEEECCCCCCEE-
Q ss_conf 8505520552035788763---------552331156688876275302540577------4100--001024676102-
Q gi|254780767|r 251 SPEIIIDKEQKKQVFMTCN---------AAMAASGTVILELALCGIPVVSIYKSE------WIVN--FFIFYIKTWTCA- 312 (383)
Q Consensus 251 ~~~i~~~~~~~~~~l~~sd---------~ai~~SGTaTLE~al~g~P~IV~Yk~~------~lt~--~i~~lik~~~i~- 312 (383)
...|.+.+++.--+|.-.+ ..++.||.-.++++....|-+|.-..+ .+.. -+..-..++.|=
T Consensus 137 ~~rILIVEDE~lIAmdLe~~l~~lG~~V~GiA~t~~eAl~la~~~~PDlvL~DI~L~d~~sGIdaa~~I~~~~~iPvIFi 216 (261)
T PRK09191 137 ATSVLIIEDEPIIAMDLEQLVESLGHRVVGIARTRAEAVALAKKTRPGLILADIQLADGSSGIDAVNDILKTFDVPVIFI 216 (261)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 78879985859999999999998799678762789999999742598989995347999879999999998289998997
Q ss_pred --EEH-HHCCCCCCCHH-HCCCCCHHHHHHHHHHHH
Q ss_conf --302-44078426124-205489899999999984
Q gi|254780767|r 313 --LPN-LIVDYPLVPEY-FNSMIRSEALVRWIERLS 344 (383)
Q Consensus 313 --LpN-ii~~~~ivPEl-iQ~~~~~~~i~~~~~~ll 344 (383)
-|- ++.|+..-|-| |.+-++++.+...+.+=+
T Consensus 217 TAyperlltg~~~ep~~li~KPf~~~~v~aai~qAl 252 (261)
T PRK09191 217 TAFPERLLTGERPEPAFLITKPFQPDTVKAAISQAL 252 (261)
T ss_pred CCCHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHH
T ss_conf 778465302788887403569898899999999999
No 421
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.05 E-value=15 Score=17.00 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=21.5
Q ss_pred CCCCCEEEEECHHHHH--HHHHHHHHHHCCCCCCEEEEC
Q ss_conf 1288868985117765--799998663013463111100
Q gi|254780767|r 86 SSKPDVLLIVDNPDFT--HRVAKRVRKKMPNLPIINYVC 122 (383)
Q Consensus 86 ~~~Pd~vi~iD~pgFn--l~lak~lkk~~~~ipvi~yv~ 122 (383)
....|+||. +||.. -++.++++++ |+|++.-+-
T Consensus 70 ~~~~d~vV~--SPgI~~~~p~~~~a~~~--~i~v~~~~e 104 (450)
T PRK02472 70 DENFDLMVK--NPGIPYDNPMVEEALEK--GIPIITEVE 104 (450)
T ss_pred CCCCCEEEE--CCCCCCCCHHHHHHHHC--CCCEEEHHH
T ss_conf 578879998--99879999999999986--996743878
No 422
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=28.80 E-value=40 Score=14.15 Aligned_cols=141 Identities=20% Similarity=0.250 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHH------------HHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCC-CCEEEEC--CCCCCCCC
Q ss_conf 46645999999999------------986100128886898511776579999866301346-3111100--22110036
Q gi|254780767|r 66 VVRHLPQFIFRINQ------------TVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNL-PIINYVC--PSVWAWRE 130 (383)
Q Consensus 66 vl~~~~~~~~~~~~------------~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~i-pvi~yv~--PqvWAWr~ 130 (383)
+.+++|.++..+.. =.+.|-..+||++|. ++ |-+++..+. ..| |+|++-+ -++|.
T Consensus 84 ~~~~~P~yL~~y~~dky~nvGtlfEPD~Eai~a~kPdLIIi--gg----R~ak~yd~l-~kiAPti~l~~d~~n~~~--- 153 (320)
T COG4607 84 PGKNLPAYLQKYKDDKYANVGTLFEPDYEAIAAAKPDLIII--GG----RAAKAYDKL-SKIAPTIDLGADTANLIE--- 153 (320)
T ss_pred CCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCEEEE--CC----HHHHHHHHH-HHHCCEEEECCCHHHHHH---
T ss_conf 87786378997146786666753587889997449988997--74----777779999-853874785265678899---
Q ss_pred CCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCC------CCCCCCEEEEEECCCCC
Q ss_conf 635579999986401567742232002553147638821122100135588897618------76556505998538743
Q gi|254780767|r 131 GRARKMCAYINQVISILPFEKEVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRN------TPSQWKKILLLPGSRAQ 204 (383)
Q Consensus 131 ~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~------~~~~~~~I~llPGSR~~ 204 (383)
.+++-...+--||--|.+.=+...+++..+ . .-.+..+..+ +.++.++=++=|+||.+
T Consensus 154 ----S~~~n~e~Lg~IFgkE~eAk~~~~~id~~i-----~-------~~k~~a~~~~~t~m~il~ngGkisafGp~SRfg 217 (320)
T COG4607 154 ----STKQNIETLGKIFGKEEEAKELLADIDASI-----A-------AAKEKAAGKGKTALVILVNGGKISAFGPSSRFG 217 (320)
T ss_pred ----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-----H-------HHHHHHHCCCCEEEEEEECCCEEEEECCCCCCE
T ss_conf ----999999999998584088999998799999-----9-------999986416980599994497045544877531
Q ss_pred CHHHHCC--CHH-----------HHHHHHHHCCCCCEEEEC
Q ss_conf 0123051--118-----------999876402735126201
Q gi|254780767|r 205 EIYKILP--FFE-----------SAVASLVKRNPFFRFSLV 232 (383)
Q Consensus 205 EI~~~lP--~~l-----------~~~~~l~~~~~~~~~~i~ 232 (383)
=|..-+- .-. =..+.+.+.||+..|++=
T Consensus 218 ~ihd~~G~~pvd~~~~~s~HGq~VSfEyI~e~NPD~lfViD 258 (320)
T COG4607 218 WIHDDLGFTPVDENIKNSNHGQPVSFEYIKEKNPDWLFVID 258 (320)
T ss_pred EEECCCCCCCCCCCCCCCCCCCEECHHHHHHHCCCEEEEEE
T ss_conf 33201288832333444678872029999751998799971
No 423
>pfam04223 CitF Citrate lyase, alpha subunit (CitF). In citrate-utilising prokaryotes, citrate lyase EC:4.1.3.6 cleaves intracellular citrate into acetate and oxaloacetate, and is organized as a functional complex consisting of alpha, beta, and gamma subunits. The gamma subunit serves as an acyl carrier protein (ACP), and has a 2'-(5''-phosphoribosyl)-3'-dephospho-CoA prosthetic group. The citrate lyase is active only if this prosthetic group is acetylated; this acetylation is catalysed by an acetate:SH-citrate lyase ligase. The alpha subunit substitutes citryl for the acetyl group to form citryl-S-ACP. The beta subunit completes the reaction by cleaving the citryl to yield oxaloacetate and (regenerated) acetyl-S-ACP. This family represents the alpha subunit EC:2.8.3.10.
Probab=28.53 E-value=37 Score=14.40 Aligned_cols=61 Identities=11% Similarity=0.215 Sum_probs=42.5
Q ss_pred HHHCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 4453110136746645999999999986100128886898511776579999866301346311
Q gi|254780767|r 55 FSELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPII 118 (383)
Q Consensus 55 ~~~l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi 118 (383)
+++++-|||-+.-..-..+...-.-++++|++- +|--|-+.|.+=++++.+.+-....|++
T Consensus 40 m~~i~~mGiKdltia~SSl~~~h~pli~~I~~G---vVt~I~tsg~rG~lg~aiS~G~l~~Pvi 100 (466)
T pfam04223 40 MEVIAKMGFKNLTIAPSSLTNVHEPLVEHIKNG---VVTNITSSGLRGKLGDAISRGLLENPVI 100 (466)
T ss_pred HHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---EEEEEEECCCCCHHHHHHHCCCCCCCEE
T ss_conf 999997396760781244750569999998668---2767886787737899973677788869
No 424
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=28.52 E-value=41 Score=14.11 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=61.7
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH--------HHHCCCEEE-ECHHHCCEEEHHHHHHHHH
Q ss_conf 9874599997682147899999999997389983999971789--------994788065-0444531101367466459
Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPS--------LQKEGLVSL-FDFSELSVIGIMQVVRHLP 71 (383)
Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~--------m~~~G~~~~-~~~~~l~v~G~~evl~~~~ 71 (383)
|++.=||+|.+.+. ...++.+.+.. .-++++..+-.++ -++.|+... ++.++..
T Consensus 1 Mkkiavl~SG~GSN----l~aii~a~~~~-~l~~~i~~Visn~~~a~~l~~A~~~~Ip~~~i~~~~~~------------ 63 (200)
T PRK05647 1 MKRIVVLASGNGSN----LQAIIDACAAG-QLPAEVVAVISDRPDAYGLERAEQAGIPTFVLDHKDFP------------ 63 (200)
T ss_pred CCEEEEEECCCCHH----HHHHHHHHHCC-CCCCEEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCC------------
T ss_conf 97899999158044----99999998759-99948999997897536659999759976996776679------------
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCE--EE-ECCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99999999986100128886898511776579999866301346311--11-0022110036635579999986401567
Q gi|254780767|r 72 QFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPII--NY-VCPSVWAWREGRARKMCAYINQVISILP 148 (383)
Q Consensus 72 ~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi--~y-v~PqvWAWr~~R~k~~~~~~d~~~~ifp 148 (383)
.--..-+++.+.+.+++||++++. ||..-+.+.+=++. .-+++ |- -.|.. .|+ .-.++.++.
T Consensus 64 ~r~~~d~~i~~~L~~~~vDlIvLA---GyMril~~~~l~~~-~~kIiNiHPsLLP~f----~G~-~~~~~a~~~------ 128 (200)
T PRK05647 64 SREAFDAALVEALDAYEPDLVVLA---GFMRILGPTFVSAY-EGRIINIHPSLLPSF----PGL-HTHQQALEA------ 128 (200)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEC---CHHHHCCHHHHHHC-CCCCEEECCCCCCCC----CCC-HHHHHHHHC------
T ss_conf 989999999999986499999998---81333898999537-799567754203588----883-269999974------
Q ss_pred CCHHHHHCCCCCCEEECC
Q ss_conf 742232002553147638
Q gi|254780767|r 149 FEKEVMQRLGGPPTTFVG 166 (383)
Q Consensus 149 FE~~~f~k~~~~~~~fVG 166 (383)
=.+..|+-+|||-
T Consensus 129 -----g~~~tG~TvH~V~ 141 (200)
T PRK05647 129 -----GVKEHGCTVHFVD 141 (200)
T ss_pred -----CCCCEEEEEEEEE
T ss_conf -----9995757999985
No 425
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=28.45 E-value=41 Score=14.11 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECHHHH
Q ss_conf 999999999986100128886898511776
Q gi|254780767|r 71 PQFIFRINQTVELIVSSKPDVLLIVDNPDF 100 (383)
Q Consensus 71 ~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgF 100 (383)
-++...++++.+.|++.+||.||.+|--.+
T Consensus 22 ~~~~~a~~~~~~~i~~~~PDtIVV~SpHw~ 51 (268)
T cd07371 22 EPRSWAYERAGASLAASRPDVVLVYSTQWI 51 (268)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 799999999999998659998999879865
No 426
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=28.45 E-value=16 Score=16.82 Aligned_cols=58 Identities=17% Similarity=0.279 Sum_probs=36.6
Q ss_pred CCCCCEEEEECHHHHH---HHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 1288868985117765---799998663013463111100221100366355799999864015677
Q gi|254780767|r 86 SSKPDVLLIVDNPDFT---HRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPF 149 (383)
Q Consensus 86 ~~~Pd~vi~iD~pgFn---l~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpF 149 (383)
..+..++|.|+.-|.- -+|.+.+++. |+++|.=.|...-++-.+|- .-.+-| +.+|-|
T Consensus 117 t~ktkaIi~Vh~~G~~~d~~~I~~iak~~--~i~vIEDaA~a~Gs~~~g~~--~Gt~Gd--~~~fSF 177 (375)
T PRK11706 117 TPKTRAIVPVHYAGVACEMDTIMALAKKH--NLFVVEDAAQGVMSTYKGRA--LGTIGH--LGCFSF 177 (375)
T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHC--CCEEEECCCCCCCCCCCCEE--CCCCCC--CCCCCC
T ss_conf 86754999967889866789999988537--90898344003687667644--576799--888589
No 427
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=28.41 E-value=41 Score=14.10 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=34.9
Q ss_pred HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHC-------------CCHHHHHHHH--HHCCCEEEE---CCCCCC
Q ss_conf 9999996048885055205520357887635523-------------3115668887--627530254---057741
Q gi|254780767|r 240 LVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMA-------------ASGTVILELA--LCGIPVVSI---YKSEWI 298 (383)
Q Consensus 240 ~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd~ai~-------------~SGTaTLE~a--l~g~P~IV~---Yk~~~l 298 (383)
..-..+.+++++..++. +....-+++.+|.+++ .+||..|-++ -+++|.+|+ ||.++-
T Consensus 161 ~~ak~L~~~gI~~~~I~-Dsa~~~~~~~vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v~aesyKf~p~ 236 (301)
T COG1184 161 IMAKELRQSGIPVTVIV-DSAVGAFMSRVDKVLVGADAILANGALVNKIGTSPLALAARELRVPFYVVAESYKFVPK 236 (301)
T ss_pred HHHHHHHHCCCCEEEEE-CHHHHHHHHHCCEEEECCCCEECCCCEEECCCHHHHHHHHHHHCCCEEEEEEEECCCCC
T ss_conf 99999997499559985-15889999748989988201214773786033699999999839988998543012235
No 428
>PRK12827 short chain dehydrogenase; Provisional
Probab=28.40 E-value=41 Score=14.10 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=22.3
Q ss_pred CCCC--EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 9874--5999976821478999999999973899839999717
Q gi|254780767|r 1 MNSL--KIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGG 41 (383)
Q Consensus 1 m~~m--ki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG 41 (383)
|.++ |+.+++|-.|| .|..+.+.|-+. +-++-+.+...
T Consensus 1 M~~L~gKvalVTGas~G--IG~aia~~la~~-Ga~V~i~~~~~ 40 (251)
T PRK12827 1 MASLDSRRVLITGGSGG--LGRAIAVRLAAD-GADVIVLDIHP 40 (251)
T ss_pred CCCCCCCEEEEECCCCH--HHHHHHHHHHHC-CCEEEEEECCC
T ss_conf 98989988999682558--999999999987-99899984888
No 429
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=28.35 E-value=41 Score=14.09 Aligned_cols=13 Identities=23% Similarity=0.335 Sum_probs=6.3
Q ss_pred HHHHHCCCEEEEC
Q ss_conf 8876275302540
Q gi|254780767|r 281 ELALCGIPVVSIY 293 (383)
Q Consensus 281 E~al~g~P~IV~Y 293 (383)
++--.|+|..|.|
T Consensus 123 ~~~~~GiPA~vS~ 135 (207)
T COG2039 123 AIREAGIPASVSN 135 (207)
T ss_pred HHHHCCCCHHHHC
T ss_conf 9998599734314
No 430
>pfam10566 Glyco_hydro_97 Glycoside hydrolase 97. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands.
Probab=28.32 E-value=41 Score=14.09 Aligned_cols=173 Identities=12% Similarity=0.222 Sum_probs=74.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCC-CCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 599997682147899999999997389-9839999717899947880650444531101367466459999999999861
Q gi|254780767|r 5 KIAVIAGEISGDLLAGDLIKSLKEMVS-YPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVEL 83 (383)
Q Consensus 5 ki~i~aGE~SGD~~~a~li~~Lk~~~~-~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~ 83 (383)
|+++ .|+.-||+..+.|+-.|-.-.. .|..+.-=| +.. =++++.....-.++ +.=.++.. .+..++.
T Consensus 251 Rvi~-I~d~~~~Lv~S~Lv~nL~~P~~~~DtsWIKPG----k~~--w~WW~~~~~~~~~~-~~g~n~~~----~k~yIDf 318 (643)
T pfam10566 251 RVFM-ISDKDGELLENDLVYNLNSPCKIEDTSWIKPG----KVA--WDWWNDWNLPGVTF-EGGINFPT----YKYYIDF 318 (643)
T ss_pred EEEE-ECCCHHHHHHCCCHHHCCCCCCCCCCCCCCCC----CEE--EEECCCCCCCCCCC-CCCCCHHH----HHHHHHH
T ss_conf 7999-80781676637434443582337875301465----369--98657887778776-56767688----8999999
Q ss_pred CCCCCCCEEEE----------------ECHHHHHHH-HHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 00128886898----------------511776579-9998663013463111100221100366355799999864015
Q gi|254780767|r 84 IVSSKPDVLLI----------------VDNPDFTHR-VAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISI 146 (383)
Q Consensus 84 i~~~~Pd~vi~----------------iD~pgFnl~-lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~i 146 (383)
..++.-+-+++ =-+|+|+++ |.+++|.+ |+.++ .|..++. +.+-.|..+
T Consensus 319 AA~~G~eyvLvD~gW~~~~~~~~~d~~~~~p~~dl~~lv~Ya~~K--gV~i~--------lw~~~~~--~~~~~~~~f-- 384 (643)
T pfam10566 319 AARNGLEYISLDEGWYTPDGGKNSDMTKVISELDLQELIAYGKSK--GVGII--------LWTNQKA--LYAQLDEAF-- 384 (643)
T ss_pred HHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC--CCEEE--------EEECCHH--HHHHHHHHH--
T ss_conf 998499689981541578887656645427645879999999867--96399--------9835667--899899999--
Q ss_pred CCCCHHHHHC--CCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECC-CCCCHHHHCCCHH
Q ss_conf 6774223200--255314763882112210013558889761876556505998538-7430123051118
Q gi|254780767|r 147 LPFEKEVMQR--LGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGS-RAQEIYKILPFFE 214 (383)
Q Consensus 147 fpFE~~~f~k--~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGS-R~~EI~~~lP~~l 214 (383)
+.|++ .+|+++-|++|==-..+..... -.....+.++..-+=|+ +..=..|--|=++
T Consensus 385 -----~~~~~~Gv~GvKvdF~~~d~Q~~v~~y~~------i~~~AA~~~L~V~fHg~~kPtG~~RTYPN~~ 444 (643)
T pfam10566 385 -----KLYEKWGVVGFKVDFLDRDDQEMVRWVYE------ALEKAAKYKLLVDFHGEYKPTGLSRTYPNLL 444 (643)
T ss_pred -----HHHHHCCCCEEEECCCCCCCHHHHHHHHH------HHHHHHHCCCEEEECCCCCCCCCCCCCCCHH
T ss_conf -----99998299727756737652899999999------9999987794699268716986530275366
No 431
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=27.94 E-value=42 Score=14.05 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=10.7
Q ss_pred CCCEEEEECHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 88868985117765799998663013463111
Q gi|254780767|r 88 KPDVLLIVDNPDFTHRVAKRVRKKMPNLPIIN 119 (383)
Q Consensus 88 ~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~ 119 (383)
+-|.+|++. .++-...+.+++. ++|++.
T Consensus 52 ~VDGiI~~~--~~~~~~~~~l~~~--~~PvV~ 79 (270)
T cd01544 52 DVDGIIAIG--KFSQEQLAKLAKL--NPNLVF 79 (270)
T ss_pred CCCEEEEEC--CCCHHHHHHHHHC--CCCEEE
T ss_conf 899999928--9999999999962--998999
No 432
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=27.93 E-value=42 Score=14.05 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=15.7
Q ss_pred HHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 610012888689851177657999986630134631111
Q gi|254780767|r 82 ELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 82 ~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~y 120 (383)
+.+..-+||+||.-++-+.. ....+++. ++|++..
T Consensus 55 E~i~~l~PDlvi~~~~~~~~--~~~~l~~~--~~~~~~~ 89 (148)
T cd00636 55 EKIAALKPDLIIANGSGLEA--WLDKLSKI--AIPVVVV 89 (148)
T ss_pred HHHHCCCCCEEEEECCCCHH--HHHHHHHC--CCCEEEE
T ss_conf 99970799899994666788--99999863--9978995
No 433
>PRK00300 gmk guanylate kinase; Provisional
Probab=27.77 E-value=42 Score=14.03 Aligned_cols=27 Identities=19% Similarity=0.076 Sum_probs=15.4
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCHHHH
Q ss_conf 899987640273512620166336889
Q gi|254780767|r 214 ESAVASLVKRNPFFRFSLVTVSSQENL 240 (383)
Q Consensus 214 l~~~~~l~~~~~~~~~~i~~~~~~~~~ 240 (383)
.+.+..+.+.+|+..+++..+|+.+.+
T Consensus 107 vqGa~~lk~~~~~~~~IFI~Pps~e~L 133 (208)
T PRK00300 107 WQGAQQVKKKMPDAVSIFILPPSLEEL 133 (208)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCHHHH
T ss_conf 899999998597757999828899999
No 434
>pfam04084 ORC2 Origin recognition complex subunit 2. All DNA replication initiation is driven by a single conserved eukaryotic initiator complex termed he origin recognition complex (ORC). The ORC is a six protein complex. The function of ORC is reviewed in.
Probab=27.50 E-value=42 Score=14.00 Aligned_cols=95 Identities=18% Similarity=0.380 Sum_probs=47.2
Q ss_pred CCCEEEEEECCHH--HHHCCCEEEEC-HHHCCEEEHH------HHHHHHH-----------HHHHHHHHHHHHCCCCCCC
Q ss_conf 9983999971789--99478806504-4453110136------7466459-----------9999999998610012888
Q gi|254780767|r 31 SYPINLVGVGGPS--LQKEGLVSLFD-FSELSVIGIM------QVVRHLP-----------QFIFRINQTVELIVSSKPD 90 (383)
Q Consensus 31 ~~~~~~~giGG~~--m~~~G~~~~~~-~~~l~v~G~~------evl~~~~-----------~~~~~~~~~~~~i~~~~Pd 90 (383)
+.++=|+|+|-.+ |++---+.+-| ..-+-|-|+. +++..+- .......++.+.+...+|+
T Consensus 54 GFnlllYG~GSKr~LL~~Fa~~~l~~~~~vvVVnGy~p~~~ik~il~~I~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 133 (316)
T pfam04084 54 GFNLLFYGLGSKRNLLEDFAKEYLSDKGPVVVVNGYFPSLNIKDILNEIAEALLEADKKTNSPSEQLDFIVSYLNSRPAP 133 (316)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 98089964674799999999998505998899968899883999999999997234655689899999999998368999
Q ss_pred --EEEE---ECHHHH-HHHHHHHHHHHCCCCCCEEEEC-------CCCC
Q ss_conf --6898---511776-5799998663013463111100-------2211
Q gi|254780767|r 91 --VLLI---VDNPDF-THRVAKRVRKKMPNLPIINYVC-------PSVW 126 (383)
Q Consensus 91 --~vi~---iD~pgF-nl~lak~lkk~~~~ipvi~yv~-------PqvW 126 (383)
++++ ||.|.+ +-+.-..|.. .-.+|-||.|| |=+|
T Consensus 134 ~~l~liIhNIDg~~LR~~~~Q~~Ls~-LA~~p~I~liaSiDhinapLlW 181 (316)
T pfam04084 134 PKLYLIIHNIDGPSLRNEKTQTLLSQ-LASIPNIHLIASIDHINAPLLW 181 (316)
T ss_pred CEEEEEEECCCCHHHCCHHHHHHHHH-HHCCCCEEEEEEECCCCCHHCC
T ss_conf 72899997778545357489999999-9769977999960678950106
No 435
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=27.48 E-value=42 Score=14.00 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=25.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf 599997682147899999999997389983999971789994
Q gi|254780767|r 5 KIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQK 46 (383)
Q Consensus 5 ki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~ 46 (383)
|+.+++|-.|| .|..+.+.|-+. +.++-+.+.-.+++++
T Consensus 3 KvalITG~s~G--IG~aia~~la~~-Ga~V~i~~~~~~~~~~ 41 (259)
T PRK12384 3 KVAVVIGGGQT--LGAFLCHGLAEE-GYRVAVADINSEKAAN 41 (259)
T ss_pred CEEEEECCCCH--HHHHHHHHHHHC-CCEEEEEECCHHHHHH
T ss_conf 78999468868--999999999987-9999999798899999
No 436
>PRK07660 consensus
Probab=27.35 E-value=29 Score=15.07 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=18.3
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 9874599997682147899999999997389983999971
Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG 40 (383)
Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG 40 (383)
|+--||.|+.+..-|--.|+.+.+ .+.++.++..-
T Consensus 1 M~Ik~VaViGaG~MG~gIA~~~a~-----~G~~V~l~D~~ 35 (283)
T PRK07660 1 MGVQKIVVIGAGQMGSGIAQVCAM-----AGYDVKVQDLK 35 (283)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----CCCCEEEEECC
T ss_conf 997889998969899999999996-----69818999798
No 437
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=27.29 E-value=43 Score=13.97 Aligned_cols=53 Identities=19% Similarity=0.306 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHHHHCCCCEEEE--EECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 2147899999999997389983999--97178999478806504445311013674664599999999998610012888
Q gi|254780767|r 13 ISGDLLAGDLIKSLKEMVSYPINLV--GVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPD 90 (383)
Q Consensus 13 ~SGD~~~a~li~~Lk~~~~~~~~~~--giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd 90 (383)
..++-+...|.+.|++. .+++++. |++|...+ +.+ +++-..+...+||
T Consensus 17 ~~~~g~~~~l~~~l~~~-~~~~~viN~Gi~G~tt~-------------------~~~----------~rl~~~l~~~~Pd 66 (177)
T cd01822 17 PPEEGWPALLQKRLDAR-GIDVTVINAGVSGDTTA-------------------GGL----------ARLPALLAQHKPD 66 (177)
T ss_pred CCCCCHHHHHHHHHHHC-CCCCEEEECCCCCCCHH-------------------HHH----------HHHHHHHHHCCCC
T ss_conf 98998699999999951-99928997881788668-------------------998----------7217777516998
Q ss_pred EEEEE
Q ss_conf 68985
Q gi|254780767|r 91 VLLIV 95 (383)
Q Consensus 91 ~vi~i 95 (383)
+|++.
T Consensus 67 ~V~i~ 71 (177)
T cd01822 67 LVILE 71 (177)
T ss_pred EEEEE
T ss_conf 99995
No 438
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=27.17 E-value=43 Score=13.96 Aligned_cols=32 Identities=19% Similarity=0.419 Sum_probs=21.0
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 4599997682147899999999997389983999971
Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVG 40 (383)
Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giG 40 (383)
|||+|..|- =..|++|++.|-++ +.+ .+.++-
T Consensus 1 MkILVTGg~---GFIGs~l~~~Ll~~-~~~-~v~~vd 32 (352)
T PRK10084 1 MKILVTGGA---GFIGSAVVRHIINN-TQD-SVVNVD 32 (352)
T ss_pred CEEEEECCH---HHHHHHHHHHHHHC-CCC-EEEEEE
T ss_conf 979997510---08999999999977-998-899984
No 439
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=27.09 E-value=43 Score=13.95 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=21.3
Q ss_pred CEEEEEECCCCHH---HHHHHHHHHHHHH
Q ss_conf 4599997682147---8999999999973
Q gi|254780767|r 4 LKIAVIAGEISGD---LLAGDLIKSLKEM 29 (383)
Q Consensus 4 mki~i~aGE~SGD---~~~a~li~~Lk~~ 29 (383)
||=+++||-.||- .....|+++|+++
T Consensus 1 MkgilIAa~~SgsGKTtvt~gL~~aL~~r 29 (432)
T PRK13896 1 MDGVVLAGTSSGVGKTVATLAVLQALADA 29 (432)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 96289977899998999999999999978
No 440
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=27.05 E-value=43 Score=13.95 Aligned_cols=16 Identities=38% Similarity=0.738 Sum_probs=9.0
Q ss_pred ECHHHHHHHHHHHHHH
Q ss_conf 5117765799998663
Q gi|254780767|r 95 VDNPDFTHRVAKRVRK 110 (383)
Q Consensus 95 iD~pgFnl~lak~lkk 110 (383)
+|||+|-.++|+.+.+
T Consensus 44 ~DYPd~a~~va~~V~~ 59 (156)
T PTZ00215 44 VDYPDYAAQVCEAVAR 59 (156)
T ss_pred CCCHHHHHHHHHHHHC
T ss_conf 9827899999999974
No 441
>pfam09370 TIM-br_sig_trns TIM-barrel signal transduction protein. This domain is likely to have a TIM barrel fold related to IGPS. Although this family of proteins are functionally uncharacterized this domain is found as an N-terminal domain of sigma 54 -dependent transcriptional activators (enhancer-binding proteins) suggesting a potential role in signal recognition/receiving and signal transduction.
Probab=27.02 E-value=43 Score=13.94 Aligned_cols=18 Identities=11% Similarity=0.226 Sum_probs=7.0
Q ss_pred HCCCEEE--ECHHHCCEEEH
Q ss_conf 4788065--04445311013
Q gi|254780767|r 46 KEGLVSL--FDFSELSVIGI 63 (383)
Q Consensus 46 ~~G~~~~--~~~~~l~v~G~ 63 (383)
+.|.+.+ ++...+-.+|-
T Consensus 33 ~gGaDlIi~ynsGrfRm~G~ 52 (268)
T pfam09370 33 AGGADLILIYNSGRYRMAGR 52 (268)
T ss_pred HCCCCEEEEECCCHHHHCCC
T ss_conf 57986998615403443588
No 442
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=26.82 E-value=44 Score=13.92 Aligned_cols=55 Identities=11% Similarity=0.068 Sum_probs=40.3
Q ss_pred HCCCCCCCHHHCC----------CCCHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 4078426124205----------4898999999999844--98999999999999999838999989
Q gi|254780767|r 317 IVDYPLVPEYFNS----------MIRSEALVRWIERLSQ--DTLQRRAMLHGFENLWDRMNTKKPAG 371 (383)
Q Consensus 317 i~~~~ivPEliQ~----------~~~~~~i~~~~~~ll~--d~~~r~~~~~~~~~~~~~Lg~~~~a~ 371 (383)
+.+..+=+|++|. +.||+++-.....+|. ||+.+.++...+.+..+++...+.++
T Consensus 60 vS~~~~d~~YLe~Ma~~~~~L~LNvTPetVd~q~~~LL~yvdp~~~~~lk~~L~~eAe~Ik~~~vSS 126 (187)
T PRK13726 60 VSQNSADASYLQQMALSFIALRLNVSPETVDASHQALLQYVRPGAQNQMKVILAEEAKRIKNNNVNS 126 (187)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 8578679899999999999876438877889999999834798788999999999999998659761
No 443
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=26.76 E-value=44 Score=13.91 Aligned_cols=43 Identities=19% Similarity=0.022 Sum_probs=32.1
Q ss_pred HHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 999986100128886898511776579999866301346311110
Q gi|254780767|r 77 INQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYV 121 (383)
Q Consensus 77 ~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv 121 (383)
.....+.+.+.+.+++|+--+.+-++.++..+.+. ++|++..-
T Consensus 54 ~~~a~~Li~~d~V~aiiG~~~S~~~~a~~~~~~~~--~vp~i~~~ 96 (333)
T cd06359 54 KQAAERLIKRDKVDFVTGVVFSNVLLAVVPPVLES--GTFYISTN 96 (333)
T ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHC--CCEEEECC
T ss_conf 99999999638963997687758899999999847--94476127
No 444
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit; InterPro: IPR000438 Fatty acid synthesis involves a set of reactions, commencing with carboxylation of acetyl-CoA to malonyl-CoA. This is an irreversible reaction, catalysed by the acetyl-CoA carboxylase complex (6.4.1.2 from EC); a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association . The reaction involves two steps: Biotin carrier protein + ATP + HCO_3^- = Carboxybiotin carrier protein + ADP + P_i Carboxybiotin carrier protein + Acetyl-CoA = Malonyl-CoA + Biotin carrier protein In the first step, biotin carboxylase catalyses the carboxylation of the carrier protein to form an intermediate. Next, the transcarboxylase complex transfers the carboxyl group from the intermediate to acetyl-CoA forming malonyl-CoA.; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex.
Probab=26.63 E-value=44 Score=13.90 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=23.1
Q ss_pred CCHHHCCCCCHHHHHH--HHHHHHCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 6124205489899999--999984498999999999999999838999
Q gi|254780767|r 323 VPEYFNSMIRSEALVR--WIERLSQDTLQRRAMLHGFENLWDRMNTKK 368 (383)
Q Consensus 323 vPEliQ~~~~~~~i~~--~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~ 368 (383)
-||=+| |+|-|.+ .++.+. .|.+++..+..+.+++....
T Consensus 250 LPegFQ---tsEFLL~hG~iD~iV----~R~~lk~tL~~ll~~~~~~~ 290 (292)
T TIGR00515 250 LPEGFQ---TSEFLLEHGAIDMIV----HRPDLKKTLASLLAMLQNKP 290 (292)
T ss_pred CCCCHH---HHHHHHHCCCEEEEE----CCHHHHHHHHHHHHHHCCCC
T ss_conf 867003---589998459512566----27799999999999842488
No 445
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family; InterPro: IPR011957 Characterised members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases..
Probab=26.39 E-value=44 Score=13.87 Aligned_cols=12 Identities=42% Similarity=0.827 Sum_probs=4.1
Q ss_pred CCEEEECCCCCC
Q ss_conf 311110022110
Q gi|254780767|r 116 PIINYVCPSVWA 127 (383)
Q Consensus 116 pvi~yv~PqvWA 127 (383)
|.|+|-.|+..|
T Consensus 262 P~ifYGvPTLYA 273 (520)
T TIGR02262 262 PTIFYGVPTLYA 273 (520)
T ss_pred CCEEECCHHHHH
T ss_conf 603631415678
No 446
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=26.21 E-value=45 Score=13.85 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=24.8
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 9874599997682147899999999997
Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGDLIKSLKE 28 (383)
Q Consensus 1 m~~mki~i~aGE~SGD~~~a~li~~Lk~ 28 (383)
|++ |+.++.=-+||++|-++.+.++|+
T Consensus 1 m~k-~~i~SGiqPTG~lHLGNYlGaik~ 27 (328)
T PRK12556 1 MSE-KIMLTGIKPTGYPHLGNYIGAIKP 27 (328)
T ss_pred CCC-CEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 999-968857798997508889999999
No 447
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=26.14 E-value=45 Score=13.84 Aligned_cols=45 Identities=16% Similarity=0.112 Sum_probs=32.9
Q ss_pred HHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 99999861001288868985117765799998663013463111100
Q gi|254780767|r 76 RINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVC 122 (383)
Q Consensus 76 ~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~ 122 (383)
......+.+...+.+++|+-.+.+....++..+.+. ++|++-+.+
T Consensus 55 a~~~~~~l~~~~~v~~iiG~~~s~~~~a~~~~~~~~--~vp~i~~~~ 99 (299)
T cd04509 55 ALAAARRLCQQEGVDALVGPVSSGVALAVAPVAEAL--KIPLISPGA 99 (299)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHH--CCCEECCCC
T ss_conf 999999986116946997788748899999999982--894222675
No 448
>PRK12311 rpsB 30S ribosomal protein S2; Provisional
Probab=26.13 E-value=45 Score=13.84 Aligned_cols=52 Identities=12% Similarity=0.242 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE-CHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 367466459999999999861001288868985-11776579999866301346311
Q gi|254780767|r 63 IMQVVRHLPQFIFRINQTVELIVSSKPDVLLIV-DNPDFTHRVAKRVRKKMPNLPII 118 (383)
Q Consensus 63 ~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~i-D~pgFnl~lak~lkk~~~~ipvi 118 (383)
+++..+..+.+.+..+-+.+...+.. .+.+| --+.+.-.+++.+++. +.+.+
T Consensus 42 IIDL~qT~~~L~~A~~~v~~ia~~Gg--~ILFVGTK~qa~~~V~~~A~r~--~~~YV 94 (332)
T PRK12311 42 IIDLAQTVPLLHRALQAVSDTVAKGG--RVLFVGTKRQAQDAVADAAKRS--AQYFV 94 (332)
T ss_pred EECHHHHHHHHHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHC--CCCEE
T ss_conf 98699999999999999999996699--7999868788999999999983--99657
No 449
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB; InterPro: IPR005980 NifB is a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack most of the C-terminal region and are excluded from this model.; GO: 0009108 coenzyme biosynthetic process, 0009399 nitrogen fixation.
Probab=26.12 E-value=24 Score=15.58 Aligned_cols=65 Identities=26% Similarity=0.386 Sum_probs=39.2
Q ss_pred CHHHCCEEEH---HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHH-CCCC---C-CEEEECCC
Q ss_conf 4445311013---674664599999999998610012888689851177657999986630-1346---3-11110022
Q gi|254780767|r 54 DFSELSVIGI---MQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKK-MPNL---P-IINYVCPS 124 (383)
Q Consensus 54 ~~~~l~v~G~---~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~-~~~i---p-vi~yv~Pq 124 (383)
.+.+|||+|+ .|++-+..+. .++...+++.=||+..++-.=|..|+ ..+-+. ..|+ - ||-.|=|.
T Consensus 75 ~i~QLSVvGIAGPGDpLan~~~T----f~Tl~~v~~~~PDvklCLSTNGL~LP--~~vDrlvdlgvdHVTiTiN~iDP~ 147 (461)
T TIGR01290 75 EIPQLSVVGIAGPGDPLANIKKT----FQTLELVAREVPDVKLCLSTNGLALP--EHVDRLVDLGVDHVTITINAIDPE 147 (461)
T ss_pred HCCCCEEEEECCCCCCCCCCCCC----HHHHHHHHHHCCCEEEECCCCCCCCH--HHHHHHHHCCCCCEEEEECCCCHH
T ss_conf 06753156325788624575000----89999998517821420012656313--465246423888179883140635
No 450
>TIGR00683 nanA N-acetylneuraminate lyase; InterPro: IPR005264 N-acetylneuraminate lyase catalyzes the cleavage of N-acetylneuraminic acid (sialic acid) to form pyruvate and N-acetyl-D-mannosamine. The enzyme plays an important role in the regulation of sialic acid metabolism in bacteria..
Probab=26.10 E-value=45 Score=13.83 Aligned_cols=15 Identities=13% Similarity=0.056 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHCCCC
Q ss_conf 579999866301346
Q gi|254780767|r 101 THRVAKRVRKKMPNL 115 (383)
Q Consensus 101 nl~lak~lkk~~~~i 115 (383)
...||+++++.++++
T Consensus 85 ~~~L~~~A~~~GyD~ 99 (294)
T TIGR00683 85 AVELAKYAKRLGYDA 99 (294)
T ss_pred HHHHHHHHHHHCCCE
T ss_conf 999999888736711
No 451
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=26.04 E-value=45 Score=13.83 Aligned_cols=19 Identities=16% Similarity=0.455 Sum_probs=10.0
Q ss_pred EEECCCCHHHH--HHHHHHHH
Q ss_conf 99768214789--99999999
Q gi|254780767|r 8 VIAGEISGDLL--AGDLIKSL 26 (383)
Q Consensus 8 i~aGE~SGD~~--~a~li~~L 26 (383)
++.+-.+||.| |.+++...
T Consensus 2 ~l~~~~~~d~h~~g~~~v~~~ 22 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIA 22 (125)
T ss_pred EEEEEECCCHHHHHHHHHHHH
T ss_conf 899972886467889999999
No 452
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=25.97 E-value=45 Score=13.82 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=22.4
Q ss_pred CCEEEEEECCCCHHHH-----HHHHHHHHHHHCCCCEE
Q ss_conf 7459999768214789-----99999999973899839
Q gi|254780767|r 3 SLKIAVIAGEISGDLL-----AGDLIKSLKEMVSYPIN 35 (383)
Q Consensus 3 ~mki~i~aGE~SGD~~-----~a~li~~Lk~~~~~~~~ 35 (383)
.|||.|++|..|...- |..+.++|.+. ..++.
T Consensus 4 ~~kI~vl~GG~S~E~eVSl~S~~~v~~aL~~~-~y~v~ 40 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREA-GYDAH 40 (304)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHC-CCEEE
T ss_conf 77189993678712899999999999988375-99799
No 453
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=25.96 E-value=45 Score=13.82 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=9.1
Q ss_pred HHHHHHHHHHCCCCCEEEE
Q ss_conf 1899987640273512620
Q gi|254780767|r 213 FESAVASLVKRNPFFRFSL 231 (383)
Q Consensus 213 ~l~~~~~l~~~~~~~~~~i 231 (383)
+.+.++.+++.+|+..+++
T Consensus 91 i~~~v~~vk~~~P~~~~l~ 109 (281)
T COG2240 91 IAGIVKAVKEANPNALYLC 109 (281)
T ss_pred HHHHHHHHHCCCCCEEEEE
T ss_conf 9999999862498738996
No 454
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes. This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres
Probab=25.87 E-value=45 Score=13.81 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHH
Q ss_conf 459999999999861001288868985117765
Q gi|254780767|r 69 HLPQFIFRINQTVELIVSSKPDVLLIVDNPDFT 101 (383)
Q Consensus 69 ~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFn 101 (383)
..-.+...+.++.+.+++.+||++|.+-.-.++
T Consensus 25 ~~~~~~~a~~~~~~~l~~~~PDvvVvi~~dH~~ 57 (271)
T cd07359 25 VRAAVFAAFARIRDRLEAARPDVVVVVGNDHFT 57 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
T ss_conf 999999999999999998398999998363475
No 455
>KOG2056 consensus
Probab=25.86 E-value=45 Score=13.81 Aligned_cols=97 Identities=12% Similarity=0.174 Sum_probs=44.5
Q ss_pred CEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHH-------HHH-HH--HHHHHCCCCCCCEEEEECHHHHHH
Q ss_conf 83999971789994788065044453110136746645999-------999-99--998610012888689851177657
Q gi|254780767|r 33 PINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQF-------IFR-IN--QTVELIVSSKPDVLLIVDNPDFTH 102 (383)
Q Consensus 33 ~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~-------~~~-~~--~~~~~i~~~~Pd~vi~iD~pgFnl 102 (383)
+-+-+|--|..|.+.- +.-|+..+ +.|++-.+-+= ++. ++ .+++++.++-+.
T Consensus 31 ~nd~wGPs~~lm~eIA-~~ty~~~e-----~~eIm~vi~kRl~d~gknWR~VyKaLtlleyLl~~GSE------------ 92 (336)
T KOG2056 31 SNDPWGPSGTLMAEIA-QATYNFVE-----YQEIMDVLWKRLNDSGKNWRHVYKALTLLEYLLKNGSE------------ 92 (336)
T ss_pred CCCCCCCCHHHHHHHH-HHHCCHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCH------------
T ss_conf 6566798667899999-97427999-----99999999999861350399999899999999962858------------
Q ss_pred HHHHHHHHHCCCC---CCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCH
Q ss_conf 9999866301346---311110022110036635579999986401567742
Q gi|254780767|r 103 RVAKRVRKKMPNL---PIINYVCPSVWAWREGRARKMCAYINQVISILPFEK 151 (383)
Q Consensus 103 ~lak~lkk~~~~i---pvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~ 151 (383)
|+..-+|...+-| .-++||-+.=--|+.. +.+-...++.++.=|.
T Consensus 93 rv~~~~ren~~~I~tL~~Fq~iD~~G~dqG~n----VRkkak~l~~LL~D~e 140 (336)
T KOG2056 93 RVVDETRENIYTIETLKDFQYIDEDGKDQGLN----VRKKAKELLSLLEDDE 140 (336)
T ss_pred HHHHHHHHHHHHHHHHHHCEEECCCCCCCHHH----HHHHHHHHHHHHCCHH
T ss_conf 89999972269999886514427778650489----9999999999862277
No 456
>pfam02056 Glyco_hydro_4 Family 4 glycosyl hydrolase.
Probab=25.84 E-value=45 Score=13.80 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=21.8
Q ss_pred HHHCCCHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 230511189998764027351262016633
Q gi|254780767|r 207 YKILPFFESAVASLVKRNPFFRFSLVTVSS 236 (383)
Q Consensus 207 ~~~lP~~l~~~~~l~~~~~~~~~~i~~~~~ 236 (383)
-|.+|.|++.++.+.+..|+.-++-.+.|.
T Consensus 118 lRtip~~l~ia~~i~e~~P~AwliNytNP~ 147 (183)
T pfam02056 118 LRTIPVFFDIAKDIEELCPDAWVLNYTNPA 147 (183)
T ss_pred HCCHHHHHHHHHHHHHHCCCCEEEECCCHH
T ss_conf 601899999999999979983899827888
No 457
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=25.74 E-value=46 Score=13.79 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=27.3
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHC---CCHHHHHHHHHH
Q ss_conf 0255314763882112210013558889761876556505998538743012305---111899987640
Q gi|254780767|r 156 RLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKIL---PFFESAVASLVK 222 (383)
Q Consensus 156 k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~l---P~~l~~~~~l~~ 222 (383)
...++++.||..|-- + ...-+.+||||+...-...+ .-+-++++...+
T Consensus 20 ~~~~v~v~~v~~~~~-----------------l--~~~D~iIlPGsK~t~~DL~~l~~~Gl~~~i~~~~~ 70 (194)
T cd01750 20 REPGVDVRYVEVPEG-----------------L--GDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYAR 70 (194)
T ss_pred CCCCCEEEEECCCCC-----------------C--CCCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 069938999679776-----------------4--66999998998838999999987497999999997
No 458
>pfam01041 DegT_DnrJ_EryC1 DegT/DnrJ/EryC1/StrS aminotransferase family. The members of this family are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA, StsC, and StsS. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase EC:2.6.1.50, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin.
Probab=25.70 E-value=19 Score=16.34 Aligned_cols=58 Identities=12% Similarity=0.224 Sum_probs=36.8
Q ss_pred CCCCCEEEEECHHHHH---HHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 1288868985117765---799998663013463111100221100366355799999864015677
Q gi|254780767|r 86 SSKPDVLLIVDNPDFT---HRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPF 149 (383)
Q Consensus 86 ~~~Pd~vi~iD~pgFn---l~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpF 149 (383)
..+.++||.|+.-|+. -++.+.+++. ++++|-=.|...-|.-.++ .+-.+-| +.+|-|
T Consensus 111 ~~~tkaIi~vh~~G~~~d~~~i~~~~~~~--~i~lIEDaA~a~Ga~~~gk--~~G~~gd--~~~fSF 171 (363)
T pfam01041 111 TPRTKAIMPVHLYGQPADMDAIRAIAAEH--GLPVIEDAAHAHGATYKGK--RVGTFGD--AATFSF 171 (363)
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHHC--CCEEEEECCCCCCCCCCCE--ECCCCCC--CCEEEC
T ss_conf 75870999878989868999999999984--9999973132026765865--4356445--210205
No 459
>pfam08915 tRNA-Thr_ED Archaea-specific editing domain of threonyl-tRNA synthetase. Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet.
Probab=25.69 E-value=25 Score=15.55 Aligned_cols=67 Identities=16% Similarity=0.286 Sum_probs=35.9
Q ss_pred HHHHHHHHHHCCCCCCCEEEEE---------CHHHHHHHHHHHHHHHC--CCCCCEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9999999861001288868985---------11776579999866301--346311110022110036635579999986
Q gi|254780767|r 74 IFRINQTVELIVSSKPDVLLIV---------DNPDFTHRVAKRVRKKM--PNLPIINYVCPSVWAWREGRARKMCAYINQ 142 (383)
Q Consensus 74 ~~~~~~~~~~i~~~~Pd~vi~i---------D~pgFnl~lak~lkk~~--~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~ 142 (383)
.+...++.+...+.+..-+|+= -.|++-+.+.+.+.... -|..
T Consensus 56 ~~av~eI~~~a~kv~~~~ivlYPyAHLSs~La~P~~A~~vL~~le~~L~~~g~e-------------------------- 109 (137)
T pfam08915 56 EKAAEEILKVASKVKATRVVLYPYAHLSSDLASPGTAVEVLKGLEERLKEEGFE-------------------------- 109 (137)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCE--------------------------
T ss_conf 999999999998449867999450331265589079999999999999758965--------------------------
Q ss_pred HCCCCCCCHHHHHCCCCCCEEECCCCCCCC
Q ss_conf 401567742232002553147638821122
Q gi|254780767|r 143 VISILPFEKEVMQRLGGPPTTFVGHPLSSS 172 (383)
Q Consensus 143 ~~~ifpFE~~~f~k~~~~~~~fVGHPl~d~ 172 (383)
..--|| -||+.+ +...-||||.+.
T Consensus 110 -V~rAPF--GwyK~F---~i~ckGHPLsEl 133 (137)
T pfam08915 110 -VYRAPF--GWYKAF---KISCKGHPLSEL 133 (137)
T ss_pred -EEECCC--CCEEEE---EEEECCCCHHHH
T ss_conf -997275--321557---987458708997
No 460
>pfam02900 LigB Catalytic LigB subunit of aromatic ring-opening dioxygenase.
Probab=25.42 E-value=46 Score=13.75 Aligned_cols=31 Identities=13% Similarity=0.104 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECHHHHH
Q ss_conf 9999999999861001288868985117765
Q gi|254780767|r 71 PQFIFRINQTVELIVSSKPDVLLIVDNPDFT 101 (383)
Q Consensus 71 ~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFn 101 (383)
.++...+.++.+.++..+||++|.|+.=-++
T Consensus 24 ~~~~~~~~~~~~~l~~~~Pd~IvVis~Hw~t 54 (265)
T pfam02900 24 EPVFDGFAEIRARLRELRPDVIVVFSPHWET 54 (265)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 9999999999998776299999998998775
No 461
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=25.40 E-value=46 Score=13.75 Aligned_cols=52 Identities=25% Similarity=0.484 Sum_probs=37.0
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECC--HHHHHCCCEEEECHHHCCE
Q ss_conf 45999976821478999999999973899839999717--8999478806504445311
Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGG--PSLQKEGLVSLFDFSELSV 60 (383)
Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG--~~m~~~G~~~~~~~~~l~v 60 (383)
|||.|+...+=|=++|+.|-++ +.++.+.+-+. +.+++.|+....+-.+..+
T Consensus 1 MkI~I~GaGAiG~~~a~~L~~~-----g~~V~lv~r~~~~~~i~~~Gl~i~~~~~~~~~ 54 (306)
T PRK12921 1 MKIAVVGAGAVGGTFGARLLEA-----GRDVTFLGRSARAEALREKGLVIRSDHGDVTV 54 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----CCCEEEEEECCHHHHHHHCCEEEEECCCEEEE
T ss_conf 9899999249999999999836-----99889997000999999789699977976998
No 462
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=25.29 E-value=35 Score=14.54 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=16.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 59999768214789999999999738998399997178
Q gi|254780767|r 5 KIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGP 42 (383)
Q Consensus 5 ki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~ 42 (383)
||-|+.+..-|--.|+.+.. .+.++.++..--+
T Consensus 6 ~VaViGAG~MG~giA~~~a~-----~G~~V~l~D~~~e 38 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCAL-----AGYDVLLNDVSAD 38 (292)
T ss_pred EEEEECCCHHHHHHHHHHHH-----CCCCEEEEECCHH
T ss_conf 89998966999999999996-----7996899979889
No 463
>LOAD_surE consensus
Probab=25.05 E-value=44 Score=13.92 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=18.1
Q ss_pred HHCCCHHH--HHHHHHHCCCEEEEC
Q ss_conf 52331156--688876275302540
Q gi|254780767|r 271 AMAASGTV--ILELALCGIPVVSIY 293 (383)
Q Consensus 271 ai~~SGTa--TLE~al~g~P~IV~Y 293 (383)
.+.-|||+ .+|+++.|+|.|-+.
T Consensus 103 dv~ySGTVgAA~ea~~~gipsiA~S 127 (192)
T LOAD_surE 103 DITYSGTVAAAMEAVLLGIPAIAIS 127 (192)
T ss_pred EEEEHHHHHHHHHHHHCCCCEEEEE
T ss_conf 5875788778999997499858998
No 464
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.99 E-value=47 Score=13.70 Aligned_cols=84 Identities=13% Similarity=0.248 Sum_probs=45.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99997682147899999999997389983999971789994788065044453110136746645999999999986100
Q gi|254780767|r 6 IAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELIV 85 (383)
Q Consensus 6 i~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i~ 85 (383)
|-++..+.+.|-+-+.+.+.+++. .++.|.+.+.--.+. ++ ....+..+.+.
T Consensus 2 Ig~~~~~~~~~pf~~~~~~g~e~~--------------A~~~G~~~~v~~~~~------d~--------~~q~~~i~~~i 53 (275)
T cd06317 2 IGYTQNNVGSHSYQTTYNKAFQAA--------------AEEDGVEVIVLDANG------DV--------ARQAAQVEDLI 53 (275)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHH--------------HHHCCCEEEEECCCC------CH--------HHHHHHHHHHH
T ss_conf 789778888986999999999999--------------997699899977999------99--------99999999999
Q ss_pred CCCCCEEEE--ECHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 128886898--51177657999986630134631111
Q gi|254780767|r 86 SSKPDVLLI--VDNPDFTHRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 86 ~~~Pd~vi~--iD~pgFnl~lak~lkk~~~~ipvi~y 120 (383)
..++|.+|+ +|..... ...+++++. |||++-+
T Consensus 54 ~~~vd~Iii~p~d~~~~~-~~i~~a~~a--gIpVv~~ 87 (275)
T cd06317 54 AQKVDGIILWPTDGQAYI-PGLRKAKQA--GIPVVIT 87 (275)
T ss_pred HCCCCEEEEECCCCHHHH-HHHHHHHHC--CCEEEEE
T ss_conf 759999999678712457-999999986--9949997
No 465
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=24.92 E-value=47 Score=13.69 Aligned_cols=40 Identities=20% Similarity=0.362 Sum_probs=25.3
Q ss_pred HHHHHHCCCCCCCEEEEE--CHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 999861001288868985--1177657999986630134631111
Q gi|254780767|r 78 NQTVELIVSSKPDVLLIV--DNPDFTHRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 78 ~~~~~~i~~~~Pd~vi~i--D~pgFnl~lak~lkk~~~~ipvi~y 120 (383)
.+..+.+...++|.+|+. |...+.-.+.+ ++++ |||++.+
T Consensus 47 ~~~i~~~i~~~vdgii~~p~~~~~~~~~~~~-a~~~--gIpvv~~ 88 (275)
T cd06320 47 LSIAENMINKGYKGLLFSPISDVNLVPAVER-AKKK--GIPVVNV 88 (275)
T ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHHH-HHHC--CCEEEEE
T ss_conf 9999999974998798767880656999999-9867--9909992
No 466
>KOG0136 consensus
Probab=24.89 E-value=47 Score=13.69 Aligned_cols=60 Identities=15% Similarity=0.090 Sum_probs=27.6
Q ss_pred EEEHHH---CCCCCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 230244---07842612420548989999999998449899999999999999983899998999999
Q gi|254780767|r 312 ALPNLI---VDYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAE 376 (383)
Q Consensus 312 ~LpNii---~~~~ivPEliQ~~~~~~~i~~~~~~ll~d~~~r~~~~~~~~~~~~~Lg~~~~a~~~AA~ 376 (383)
+|+|.+ ....--|++.+...+..+ ++.+-++...+|+. ...++++...+.... +.+.|.+
T Consensus 458 ~l~~~v~yl~~~~~~~~~~~~~~~~~~---e~~~a~e~~A~r~~-~~a~~~l~~~~~~~~-~~e~A~N 520 (670)
T KOG0136 458 SLSPTVAYLAASALKPQLISGAGDWLN---EYVEAFEHRAARQV-WIAAENLLKLMSSGE-SQEVAWN 520 (670)
T ss_pred CCCCCHHHHHHCCCCCCCCCCCCCHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHCCC-CHHHHHH
T ss_conf 789723655411257655665554067---78999999999999-999999999986476-5888888
No 467
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=24.87 E-value=47 Score=13.69 Aligned_cols=44 Identities=11% Similarity=0.123 Sum_probs=33.1
Q ss_pred HHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 9999986100128886898511776579999866301346311110
Q gi|254780767|r 76 RINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYV 121 (383)
Q Consensus 76 ~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv 121 (383)
......+.+.+.+.+++|+-...+..+-++..+.+. ++|++...
T Consensus 55 a~~~a~~Li~~~~V~~iiG~~~S~~~~a~~~~~~~~--~vp~i~~~ 98 (344)
T cd06345 55 AVRAFERLVSQDKVDAVVGGYSSEVVLALQDVAAEN--KVPFIVTG 98 (344)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHC--CCEEEEEC
T ss_conf 999999999659970874676857889999999986--95499807
No 468
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism . Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology .; GO: 0005975 carbohydrate metabolic process.
Probab=24.72 E-value=48 Score=13.67 Aligned_cols=18 Identities=39% Similarity=0.608 Sum_probs=14.3
Q ss_pred EECHHHHHHHHHHHHHHH
Q ss_conf 851177657999986630
Q gi|254780767|r 94 IVDNPDFTHRVAKRVRKK 111 (383)
Q Consensus 94 ~iD~pgFnl~lak~lkk~ 111 (383)
.+|||+|=..+|.+..+.
T Consensus 38 ~~DYPdYA~~Va~~v~~~ 55 (146)
T TIGR00689 38 SVDYPDYAKLVAQKVVEG 55 (146)
T ss_pred CCCCHHHHHHHHHHHHCC
T ss_conf 988747899999998628
No 469
>TIGR01743 purR_Bsub pur operon repressor; InterPro: IPR010078 This entry represents the pur operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.; GO: 0003677 DNA binding, 0016564 transcription repressor activity, 0016481 negative regulation of transcription, 0045982 negative regulation of purine base metabolic process.
Probab=24.65 E-value=48 Score=13.66 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 746645999999999986100128886898511776579999866301346311
Q gi|254780767|r 65 QVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPII 118 (383)
Q Consensus 65 evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi 118 (383)
|.+.+-+=+.|.-+-+.....+.+-|+|++|...| .+||-.+-+ .+|+|+|
T Consensus 105 Dll~~Psi~ski~~ila~~F~d~~ID~V~TV~TKG--vPLA~~~A~-~LnV~lv 155 (269)
T TIGR01743 105 DLLFKPSILSKIGKILASVFIDKEIDAVMTVETKG--VPLAYAVAK-VLNVPLV 155 (269)
T ss_pred HHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCC--HHHHHHHHH-HCCCCEE
T ss_conf 45417815777888875432685578789952188--238989987-6496179
No 470
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=24.61 E-value=48 Score=13.66 Aligned_cols=79 Identities=13% Similarity=0.246 Sum_probs=40.0
Q ss_pred HHHCCCCCCCEEEE-ECHHHHHH----HHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHC-----------
Q ss_conf 86100128886898-51177657----999986630134631111002211003663557999998640-----------
Q gi|254780767|r 81 VELIVSSKPDVLLI-VDNPDFTH----RVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVI----------- 144 (383)
Q Consensus 81 ~~~i~~~~Pd~vi~-iD~pgFnl----~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~----------- 144 (383)
.+...+.+-..||+ ||+||-.. .++..+++..-+.||+-|+.-.- ..-...+.-.+|+++
T Consensus 35 ~~A~~d~~vkaivL~InSPGG~~~~s~~i~~~I~~~~~~KPVva~~~~~~----aSggY~iAsaad~I~a~~~s~vGSIG 110 (214)
T cd07022 35 RAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGLA----ASAAYWIASAADRIVVTPTAGVGSIG 110 (214)
T ss_pred HHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCH----HHHHHHHHHHCCCEEECCCCEEEEEE
T ss_conf 99950999758999997989768999999999998608998999988811----56899998725705877764687641
Q ss_pred --CCCCCCHHHHHCCCCCCEEE
Q ss_conf --15677422320025531476
Q gi|254780767|r 145 --SILPFEKEVMQRLGGPPTTF 164 (383)
Q Consensus 145 --~ifpFE~~~f~k~~~~~~~f 164 (383)
..+|+-.+++++. |++...
T Consensus 111 v~~~~~~~~~ll~k~-Gi~~~~ 131 (214)
T cd07022 111 VVASHVDQSKALEKA-GLKVTL 131 (214)
T ss_pred EEEECCCHHHHHHHC-CCEEEE
T ss_conf 488617768889867-954787
No 471
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase; InterPro: IPR006405 A deep split separates two related families of proteins, one of which includes experimentally characterised examples of nicotinate phosphoribosyltransferase, the first enzyme of NAD salvage biosynthesis. This entry represents the other family. Members have a different (longer) spacing of several key motifs and have an additional C-terminal domain of up to 100 residues. One argument suggesting that this family represents the same enzyme is that no species has a member of both families. Another is that the gene encoding this protein is located near other NAD salvage biosynthesis genes in Nostoc and in at least four different Gram-positive bacteria. NAD and NADP are ubiquitous in life. Most members of this family are from Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cut-offs. .
Probab=24.57 E-value=48 Score=13.65 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHC--CCHHHHHHHH-HHCCC
Q ss_conf 357887635523--3115668887-62753
Q gi|254780767|r 262 KQVFMTCNAAMA--ASGTVILELA-LCGIP 288 (383)
Q Consensus 262 ~~~l~~sd~ai~--~SGTaTLE~a-l~g~P 288 (383)
..++++|.+|-. ++||..+|++ .+|+|
T Consensus 163 daAl~AaRAAyigGa~gTSN~~AGr~ygIP 192 (523)
T TIGR01513 163 DAALKAARAAYIGGADGTSNVLAGRLYGIP 192 (523)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHCCCC
T ss_conf 378999888888611043788888773889
No 472
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=24.57 E-value=20 Score=16.12 Aligned_cols=45 Identities=22% Similarity=0.261 Sum_probs=33.6
Q ss_pred CCCCCEEEEECHHHHH---HHHHHHHHHHCCCCCCEEEECCCCCCCCCCC
Q ss_conf 1288868985117765---7999986630134631111002211003663
Q gi|254780767|r 86 SSKPDVLLIVDNPDFT---HRVAKRVRKKMPNLPIINYVCPSVWAWREGR 132 (383)
Q Consensus 86 ~~~Pd~vi~iD~pgFn---l~lak~lkk~~~~ipvi~yv~PqvWAWr~~R 132 (383)
..+..+||.|+.-|.- -.+.+.+++. |+|+|-=.|-...|+-.+|
T Consensus 119 ~~ktkaIi~vh~~G~~~d~~~i~~ia~~~--~i~lIEDaA~a~Ga~~~gk 166 (380)
T TIGR03588 119 GKLPKAIVPVDFAGKSVDMQAIAALAKKH--GLKIIEDASHALGAEYGGK 166 (380)
T ss_pred CCCCEEEEEECCCCEECCHHHHHHHHHHC--CCEEEEECCCHHCCCCCCC
T ss_conf 77725999948985434899999999986--9889998800115775787
No 473
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=24.53 E-value=48 Score=13.65 Aligned_cols=30 Identities=7% Similarity=-0.006 Sum_probs=12.4
Q ss_pred HHHHCCCCCCCEEEEECHHHHHHHHHHHHHH
Q ss_conf 9861001288868985117765799998663
Q gi|254780767|r 80 TVELIVSSKPDVLLIVDNPDFTHRVAKRVRK 110 (383)
Q Consensus 80 ~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk 110 (383)
..+.+.+.+.+++++.-++. ....+..+.+
T Consensus 63 a~~Li~~d~V~~v~G~~ss~-~~aa~~~~~~ 92 (347)
T cd06336 63 ARRLVQQDGVKFILGPIGGG-ITAAQQITER 92 (347)
T ss_pred HHHHHHCCCEEEEECCCCHH-HHHHHHHHHH
T ss_conf 99998619808998888628-8887899996
No 474
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=24.53 E-value=48 Score=13.65 Aligned_cols=75 Identities=20% Similarity=0.379 Sum_probs=40.9
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45999976821478999999999973899839999717899947880650444531101367466459999999999861
Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVEL 83 (383)
Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~ 83 (383)
|||.|+=-|+. .+..++.+-+..+ ++++.|-.++- .+..+.
T Consensus 2 ~ki~I~DDe~~----~~~~l~~~l~~~~-~i~~~~~~~~~----------------------------------~eal~~ 42 (239)
T PRK11697 2 IKVLIVDDEPL----AREELRELLQEEG-DIEIVGECSNA----------------------------------IEALGA 42 (239)
T ss_pred CEEEEECCCHH----HHHHHHHHHHHCC-CEEEEEEECCH----------------------------------HHHHHH
T ss_conf 49999969999----9999999997587-98999998999----------------------------------999999
Q ss_pred CCCCCCCEEEE-ECHHHHH-HHHHHHHHHHCCCCC-CEE
Q ss_conf 00128886898-5117765-799998663013463-111
Q gi|254780767|r 84 IVSSKPDVLLI-VDNPDFT-HRVAKRVRKKMPNLP-IIN 119 (383)
Q Consensus 84 i~~~~Pd~vi~-iD~pgFn-l~lak~lkk~~~~ip-vi~ 119 (383)
+.+.+||++++ |+=||.| +-+|+.++.. ..| +|+
T Consensus 43 ~~~~~~DllfLDI~m~~~~G~ela~~l~~~--~~~~iIF 79 (239)
T PRK11697 43 IHRLKPDVVFLDIQMPRISGLELVGMLDPE--HMPYIVF 79 (239)
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHCCC--CCCEEEE
T ss_conf 985399999983998695999999983733--4986999
No 475
>PRK13557 histidine kinase; Provisional
Probab=24.46 E-value=48 Score=13.64 Aligned_cols=95 Identities=12% Similarity=0.079 Sum_probs=43.6
Q ss_pred CEEEEECCCCH------HHHHH--HHHHHCCCHHHHHHHHHHC-CCEEEEC--CCC-CCEEE-EEECCCCCCEEEEHHHC
Q ss_conf 50552055203------57887--6355233115668887627-5302540--577-41000-01024676102302440
Q gi|254780767|r 252 PEIIIDKEQKK------QVFMT--CNAAMAASGTVILELALCG-IPVVSIY--KSE-WIVNF-FIFYIKTWTCALPNLIV 318 (383)
Q Consensus 252 ~~i~~~~~~~~------~~l~~--sd~ai~~SGTaTLE~al~g-~P~IV~Y--k~~-~lt~~-i~~lik~~~i~LpNii~ 318 (383)
..|.+.+++.. ..|.. +....+.+|...||+.--+ .|-+|+- .+. -.+.+ +.+-++..+-.+|=|+.
T Consensus 414 ~~ILvVDD~~~~r~~~~~~L~~~G~~v~~a~~G~eAl~~l~~~~~~Dlvl~D~~MPg~mdG~el~r~ir~~~p~i~ii~~ 493 (538)
T PRK13557 414 ETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILESHPEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKVLLT 493 (538)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 25899679899999999999976999999899999999996099988998877799998899999999853899839999
Q ss_pred -------------CCCCCCHHHCCCCCHHHHHHHHHHHHCCH
Q ss_conf -------------78426124205489899999999984498
Q gi|254780767|r 319 -------------DYPLVPEYFNSMIRSEALVRWIERLSQDT 347 (383)
Q Consensus 319 -------------~~~ivPEliQ~~~~~~~i~~~~~~ll~d~ 347 (383)
....+ .+|++-++.+.|...+.++|+.|
T Consensus 494 Tg~~~~~~~~~~~~~~~~-~~l~KP~~~~~L~~~i~~~L~~~ 534 (538)
T PRK13557 494 TGYAEASIERTDVGGSEF-DIVNKPYRRAELARRVRMVLDGP 534 (538)
T ss_pred ECCCCHHHHHHHHHCCCC-CEECCCCCHHHHHHHHHHHHCCC
T ss_conf 799877889977528998-88819899999999999986789
No 476
>COG3641 PfoR Predicted membrane protein, putative toxin regulator [General function prediction only]
Probab=24.45 E-value=20 Score=16.18 Aligned_cols=51 Identities=24% Similarity=0.262 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHCCC-EEEECCCCCCEEEEEECCCCCCEEEEHHHCCCC-CCC
Q ss_conf 311566888762753-025405774100001024676102302440784-261
Q gi|254780767|r 274 ASGTVILELALCGIP-VVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYP-LVP 324 (383)
Q Consensus 274 ~SGTaTLE~al~g~P-~IV~Yk~~~lt~~i~~lik~~~i~LpNii~~~~-ivP 324 (383)
+||.|+.-|+..-+- .+-.||.|-+-..+..++-.....+||++-+-- .+|
T Consensus 209 asGAA~iG~sa~~v~f~v~s~rvN~~G~~~a~~~gt~km~~PNiik~Pii~lP 261 (348)
T COG3641 209 ASGAASIGCSAQMVGFAVGSYRVNSWGVPFALLIGTPKMQMPNIIKNPIIMLP 261 (348)
T ss_pred HHHHHHHCHHHHHHHHHEEEEEECCCCCHHHHHHCCCHHHCCHHHHCCHHHHH
T ss_conf 34455525288977764034520565515799847505414067726277888
No 477
>KOG4184 consensus
Probab=24.25 E-value=49 Score=13.61 Aligned_cols=43 Identities=14% Similarity=0.343 Sum_probs=29.2
Q ss_pred HHHHHHHHHHCCCCCCCEEEE-----ECHHHHHHHHHHHH--HHHCCCCC
Q ss_conf 999999986100128886898-----51177657999986--63013463
Q gi|254780767|r 74 IFRINQTVELIVSSKPDVLLI-----VDNPDFTHRVAKRV--RKKMPNLP 116 (383)
Q Consensus 74 ~~~~~~~~~~i~~~~Pd~vi~-----iD~pgFnl~lak~l--kk~~~~ip 116 (383)
.+...+..+.++.++||+||. +|...|-+|=+|.. ++....||
T Consensus 224 m~~~E~f~~Al~~fqPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP 273 (478)
T KOG4184 224 MRAVEQFTDALKMFQPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIP 273 (478)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 98999999999973997699964368765418989999999999875189
No 478
>cd05781 DNA_polB_B3_exo The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replication are similar to those from eukaryotes. Some archaea possess multiple family-B DNA polymerases. B3 is mainly found in crenarch
Probab=24.17 E-value=49 Score=13.60 Aligned_cols=41 Identities=17% Similarity=0.266 Sum_probs=27.0
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECHHHHHHH-HHHHHHHHCCCCC
Q ss_conf 999999986100128886898511776579-9998663013463
Q gi|254780767|r 74 IFRINQTVELIVSSKPDVLLIVDNPDFTHR-VAKRVRKKMPNLP 116 (383)
Q Consensus 74 ~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~-lak~lkk~~~~ip 116 (383)
+..+....+.+++.+||++++=-.-+|-++ |..++++. |++
T Consensus 49 ~~ll~~f~~~i~~~~Pdii~gyN~~~FD~pyl~~Ra~~~--~i~ 90 (188)
T cd05781 49 RKIIREFVKYVKEYDPDIIVGYNSNAFDWPYLVERARVL--GVK 90 (188)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH--CCC
T ss_conf 999999999998729999996698675789999999996--998
No 479
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.17 E-value=49 Score=13.60 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=23.5
Q ss_pred HHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 9998610012888689851177657999986630134631111
Q gi|254780767|r 78 NQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 78 ~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~y 120 (383)
.++.+.+...+.|.+|+.-+-.-+-.+.+.+++. ++|++.+
T Consensus 45 ~~~l~~l~~~~vdGiIi~~~~~~~~~~~~~~~~~--~iPvV~~ 85 (269)
T cd06281 45 LEILRSFEQRRMDGIIIAPGDERDPELVDALASL--DLPIVLL 85 (269)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHC--CCCEEEE
T ss_conf 9999999857998999767777999999999847--9988998
No 480
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=24.06 E-value=49 Score=13.59 Aligned_cols=161 Identities=14% Similarity=0.093 Sum_probs=81.4
Q ss_pred HHHHHHHHHHCCCCCCCEEEEE----------CHHHHHHHHHHHHHHHCCCCCCEEEECCCCC--CCCCCCHHHHHHHHH
Q ss_conf 9999999861001288868985----------1177657999986630134631111002211--003663557999998
Q gi|254780767|r 74 IFRINQTVELIVSSKPDVLLIV----------DNPDFTHRVAKRVRKKMPNLPIINYVCPSVW--AWREGRARKMCAYIN 141 (383)
Q Consensus 74 ~~~~~~~~~~i~~~~Pd~vi~i----------D~pgFnl~lak~lkk~~~~ipvi~yv~PqvW--AWr~~R~k~~~~~~d 141 (383)
.++.+.+.+..+.++|+++..+ |-.+ +++.++++ .++|+++.-+|.+= .|..+=...+...++
T Consensus 73 ~~L~~~i~~~~~~~~P~~i~V~tTC~~eiIGdDi~~----v~~~~~~~-~~~pvi~v~tpgf~g~~~~~G~~~a~~~i~~ 147 (406)
T cd01967 73 KKLKKAIKEAYERFPPKAIFVYSTCPTGLIGDDIEA----VAKEASKE-LGIPVIPVNCEGFRGVSQSLGHHIANDAILD 147 (406)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCHHH----HHHHHHHH-HCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 999999999998569978999777809985876899----99998886-0997899878987887646999999999999
Q ss_pred HHCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEC-CCCCCHHHH------CC---
Q ss_conf 64015677422320025531476388211221001355888976187655650599853-874301230------51---
Q gi|254780767|r 142 QVISILPFEKEVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPG-SRAQEIYKI------LP--- 211 (383)
Q Consensus 142 ~~~~ifpFE~~~f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPG-SR~~EI~~~------lP--- 211 (383)
++.. +.|.+ -.+ .+ .+-.+|- .. .......-....+..|+. +...+|| ++-.|+++. +.
T Consensus 148 ~l~~--~~~~~-~~~-~~-~VNiig~-~~-~~~d~~eik~ll~~~Gi~----v~~~~~~~~s~~~i~~~~~A~~ni~~~~ 216 (406)
T cd01967 148 HLVG--TKEPE-EKT-PY-DVNIIGE-YN-IGGDAWVIKPLLEELGIR----VNATFTGDGTVDELRRAHRAKLNLVHCS 216 (406)
T ss_pred HHCC--CCCCC-CCC-CC-EEEEECC-CC-CHHHHHHHHHHHHHCCCC----EEEECCCCCCHHHHHHCCCCCEEEEECH
T ss_conf 8444--57876-788-98-3999888-78-701399999999985992----6887489998577764678868999655
Q ss_pred -CHHHHHHHHHHCCCC-CEEEECCC-CCHHHHHHHHHHHCCC
Q ss_conf -118999876402735-12620166-3368899999960488
Q gi|254780767|r 212 -FFESAVASLVKRNPF-FRFSLVTV-SSQENLVRCIVSKWDI 250 (383)
Q Consensus 212 -~~l~~~~~l~~~~~~-~~~~i~~~-~~~~~~~~~~~~~~~~ 250 (383)
.+..+++.|.+++.- +....|.. .+.+.+++...+..+.
T Consensus 217 ~~~~~~a~~L~~~fgip~~~~~PiG~~~T~~fl~~la~~~g~ 258 (406)
T cd01967 217 RSMNYLAREMEERYGIPYMEVNFYGFEDTSESLRKIAKFFGD 258 (406)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 789999999999609744205767789999999999998599
No 481
>TIGR01815 TrpE-clade3 anthranilate synthase; InterPro: IPR010112 This entry represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.; GO: 0004049 anthranilate synthase activity, 0000162 tryptophan biosynthetic process.
Probab=24.05 E-value=42 Score=14.02 Aligned_cols=48 Identities=23% Similarity=0.344 Sum_probs=24.8
Q ss_pred EEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHH---------HCCCCCCCEEEEECHHH
Q ss_conf 065044453110136746645999999999986---------10012888689851177
Q gi|254780767|r 50 VSLFDFSELSVIGIMQVVRHLPQFIFRINQTVE---------LIVSSKPDVLLIVDNPD 99 (383)
Q Consensus 50 ~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~---------~i~~~~Pd~vi~iD~pg 99 (383)
.-+|...|=+..|+.-++- .-+-..|.++.. .+.-+=||-+|.||+-.
T Consensus 134 l~lF~s~eD~~LGLYGAFg--YDLaFQFe~I~~~LeRPdDQRDlvLyLPDel~vvD~ya 190 (726)
T TIGR01815 134 LDLFASEEDELLGLYGAFG--YDLAFQFEAIEQKLERPDDQRDLVLYLPDELVVVDYYA 190 (726)
T ss_pred HHHHCCCCCCCCCCCHHHH--HHHHHHCCHHHHCCCCCCCHHHHHHHCCCEEEEECHHH
T ss_conf 8631678776666200245--54542111254314778513478763885268862034
No 482
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=24.01 E-value=49 Score=13.58 Aligned_cols=20 Identities=5% Similarity=0.132 Sum_probs=9.9
Q ss_pred EEEEECCCCHHHHHHHHHHH
Q ss_conf 05520552035788763552
Q gi|254780767|r 253 EIIIDKEQKKQVFMTCNAAM 272 (383)
Q Consensus 253 ~i~~~~~~~~~~l~~sd~ai 272 (383)
-|+....+...++..+|=.+
T Consensus 191 tIl~vtHDL~~v~~~~D~vi 210 (254)
T COG1121 191 TVLMVTHDLGLVMAYFDRVI 210 (254)
T ss_pred EEEEEECCCHHHHHHCCEEE
T ss_conf 89999588177685388799
No 483
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=23.94 E-value=49 Score=13.57 Aligned_cols=61 Identities=21% Similarity=0.281 Sum_probs=37.5
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECC
Q ss_conf 76388211221001355888976187655650599853874301230511189998764027351262016
Q gi|254780767|r 163 TFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVT 233 (383)
Q Consensus 163 ~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~~lP~~l~~~~~l~~~~~~~~~~i~~ 233 (383)
.+.|+|+.+.+.-.+--....+.-+- ....|.++.|... +..+++..+.+++|+++++-..
T Consensus 81 ~~~g~~~~~rv~G~Dl~~~Ll~~a~~--~~~~vfllGgkp~--------V~~~a~~~l~~~~p~l~ivg~h 141 (253)
T COG1922 81 RLLGQPLPERVAGTDLVEALLKRAAE--EGKRVFLLGGKPG--------VAEQAAAKLRAKYPGLKIVGSH 141 (253)
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHCC--CCCEEEEECCCHH--------HHHHHHHHHHHHCCCCEEEEEC
T ss_conf 98176676547848999999997175--6864999648778--------9999999999878995699951
No 484
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=23.73 E-value=50 Score=13.55 Aligned_cols=85 Identities=16% Similarity=0.268 Sum_probs=45.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 59999768214789999999999738998399997178999478806504445311013674664599999999998610
Q gi|254780767|r 5 KIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELI 84 (383)
Q Consensus 5 ki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i 84 (383)
+|-++..+.+ |-+-+.+++.+++. +++.|.+.++-..+.+ .....+..+.+
T Consensus 1 tIgvi~p~~~-~~f~~~~~~gi~~~--------------a~~~gy~~~~~~~~~~--------------~~~~~~~i~~~ 51 (264)
T cd01537 1 TIGVLVPDLD-NPFFAQVLKGIEEA--------------AKAAGYQVLLANSQND--------------AEKQLSALENL 51 (264)
T ss_pred CEEEEECCCC-CHHHHHHHHHHHHH--------------HHHCCCEEEEEECCCC--------------HHHHHHHHHHH
T ss_conf 9899978897-79999999999999--------------9986998999979999--------------89999999999
Q ss_pred CCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 012888689851177657999986630134631111
Q gi|254780767|r 85 VSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 85 ~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~y 120 (383)
...++|.+|+.-...-+....+.+++. ++|++.+
T Consensus 52 ~~~~vDgiIi~~~~~~~~~~~~~~~~~--~ipvV~~ 85 (264)
T cd01537 52 IARGVDGIIIAPSDLTAPTIVKLARKA--GIPVVLV 85 (264)
T ss_pred HHCCCCEEEEECCCCCCHHHHHHHHHC--CCCEEEE
T ss_conf 976999999967988868999999975--9979998
No 485
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=23.59 E-value=50 Score=13.53 Aligned_cols=12 Identities=8% Similarity=0.063 Sum_probs=7.5
Q ss_pred HHHCCEEEHHHH
Q ss_conf 445311013674
Q gi|254780767|r 55 FSELSVIGIMQV 66 (383)
Q Consensus 55 ~~~l~v~G~~ev 66 (383)
..-++-|||-+.
T Consensus 65 ~~~iN~mG~~N~ 76 (310)
T COG0167 65 EGLINRMGFNNP 76 (310)
T ss_pred CCHHHHCCCCCH
T ss_conf 308875489865
No 486
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=23.53 E-value=50 Score=13.52 Aligned_cols=39 Identities=21% Similarity=0.356 Sum_probs=24.5
Q ss_pred CCCCEEEEEECCCCHHHHHHH-HHHHHHH-HCCCCEEEEEECCHHH
Q ss_conf 987459999768214789999-9999997-3899839999717899
Q gi|254780767|r 1 MNSLKIAVIAGEISGDLLAGD-LIKSLKE-MVSYPINLVGVGGPSL 44 (383)
Q Consensus 1 m~~mki~i~aGE~SGD~~~a~-li~~Lk~-~~~~~~~~~giGG~~m 44 (383)
|.+||+..++ |+|++. .++++.+ .....+.+.-++|+.-
T Consensus 1 ~~~mkil~vt-----DlHg~~~~~~k~~~~~~~~~~D~lviaGDlt 41 (226)
T COG2129 1 IKKMKILAVT-----DLHGSEDSLKKLLNAAADIRADLLVIAGDLT 41 (226)
T ss_pred CCCCEEEEEE-----CCCCCHHHHHHHHHHHHHCCCCEEEEECCEE
T ss_conf 9740599984-----0333357899999987603688899953352
No 487
>pfam01513 NAD_kinase ATP-NAD kinase. Members of this family include ATP-NAD kinases EC:2.7.1.23, which catalyses the phosphorylation of NAD to NADP utilising ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus. Also includes NADH kinases EC:2.7.1.86.
Probab=23.49 E-value=50 Score=13.52 Aligned_cols=53 Identities=9% Similarity=0.211 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 4664599999999998610012888689851177657999986630134631111
Q gi|254780767|r 66 VVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 66 vl~~~~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~y 120 (383)
.-.....+.+..........+.++|++|.+--=|.-|+.++.+... ++|++=.
T Consensus 13 a~~~~~~l~~~L~~~~~~~~~~~~Dlii~lGGDGT~L~~~~~~~~~--~~PilGi 65 (243)
T pfam01513 13 AEERASELQRLLLDATREMVEEGVDLIVVLGGDGTALDAARLLGDH--DIPILGI 65 (243)
T ss_pred HHHHHHHHHHHHHHCCHHHHCCCCCEEEEECCCHHHHHHHHHHCCC--CCCEEEE
T ss_conf 9999999999988647213055988999989878999999984567--9958998
No 488
>TIGR02120 GspF general secretion pathway protein F; InterPro: IPR011850 This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the "Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. GspF nearly always clusters with other GSP subunits. However, some genes from Xylella and Xanthomonas strains are excluded from this entry due to excessive divergence.; GO: 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=23.35 E-value=20 Score=16.11 Aligned_cols=16 Identities=13% Similarity=0.061 Sum_probs=6.6
Q ss_pred HHHHCCHHHHHHHHHH
Q ss_conf 9984498999999999
Q gi|254780767|r 341 ERLSQDTLQRRAMLHG 356 (383)
Q Consensus 341 ~~ll~d~~~r~~~~~~ 356 (383)
.+.++|...|+.+-+.
T Consensus 306 ~~~~~N~~lr~~v~~a 321 (414)
T TIGR02120 306 RETLTNRALRAAVEDA 321 (414)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9998759999999999
No 489
>PRK08507 prephenate dehydrogenase; Validated
Probab=23.23 E-value=51 Score=13.48 Aligned_cols=80 Identities=21% Similarity=0.266 Sum_probs=47.8
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45999976821478999999999973899839999717899947880650444531101367466459999999999861
Q gi|254780767|r 4 LKIAVIAGEISGDLLAGDLIKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVEL 83 (383)
Q Consensus 4 mki~i~aGE~SGD~~~a~li~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~ 83 (383)
|||.|+.- .+.|+.+.++||+. +...+++|+.-+.-. +-...+ .|+++-...+ +.
T Consensus 1 M~I~IiGl----GLiGgSla~alk~~-~~~~~V~g~d~~~~~------~~~A~~---~g~id~~~~~-----------~~ 55 (275)
T PRK08507 1 MKIGIIGL----GLMGGSLGLALKEN-KLISCVYGYDHNEEH------EKDALD---LGLVDEIVEF-----------EE 55 (275)
T ss_pred CEEEEEEC----CHHHHHHHHHHHHC-CCCCEEEEEECCHHH------HHHHHH---CCCCCCCCCH-----------HH
T ss_conf 98999900----87899999999950-998679999599999------999998---6998610673-----------12
Q ss_pred CCCCCCCEEEEECHHHHHHHHHHHHHH
Q ss_conf 001288868985117765799998663
Q gi|254780767|r 84 IVSSKPDVLLIVDNPDFTHRVAKRVRK 110 (383)
Q Consensus 84 i~~~~Pd~vi~iD~pgFnl~lak~lkk 110 (383)
+ .+.|+||+.-.++-...+.+.+..
T Consensus 56 i--~~aDlVila~Pv~~~~~~l~~l~~ 80 (275)
T PRK08507 56 I--KECDVIFLAIPVDAIIEILQKLLD 80 (275)
T ss_pred C--CCCCEEEEECCHHHHHHHHHHHHH
T ss_conf 3--657989991769999999999860
No 490
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase; InterPro: IPR011183 Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyses the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (2.7.1.90 from EC). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes . IPR012828 from INTERPRO represents the ATP-dependent 6-phosphofructokinase enzyme contained within Phosphofructokinase. This entry contains primarily bacterial, plant alpha, and plant beta sequences. These may be dimeric nonallosteric enzymes (bacteria) or allosteric heterotetramers (plants) . For additional information please see , , , .; GO: 0005524 ATP binding, 0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex.
Probab=23.03 E-value=51 Score=13.46 Aligned_cols=118 Identities=25% Similarity=0.393 Sum_probs=66.7
Q ss_pred CCCEEEEE-ECCC--CHHHHHHHHHHHHHHHCCCCEEEEE-ECCHHHHHCCC--EEEECHHH-----CCEEEHHHHHHHH
Q ss_conf 87459999-7682--1478999999999973899839999-71789994788--06504445-----3110136746645
Q gi|254780767|r 2 NSLKIAVI-AGEI--SGDLLAGDLIKSLKEMVSYPINLVG-VGGPSLQKEGL--VSLFDFSE-----LSVIGIMQVVRHL 70 (383)
Q Consensus 2 ~~mki~i~-aGE~--SGD~~~a~li~~Lk~~~~~~~~~~g-iGG~~m~~~G~--~~~~~~~~-----l~v~G~~evl~~~ 70 (383)
.+|||-|+ +|.+ .|+.==+-|-.+||+. +++=.++| .|||. |+ +...++++ +-=+|=+|.+-.=
T Consensus 73 ~~l~~GviLSGGqAPGGHNVi~GLFD~lk~~-np~SkLyGF~~Gp~----GL~~~~~~elT~~~i~~YRN~GGFD~iGSG 147 (566)
T TIGR02477 73 QPLKVGVILSGGQAPGGHNVISGLFDALKKL-NPESKLYGFLGGPE----GLLDNNYVELTKELIDEYRNTGGFDIIGSG 147 (566)
T ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCCCC----CCCCCCEEEECHHHHHCCCCCCCEEEECCC
T ss_conf 8756889875798977114677789999973-77672001020744----431587157637887222788774200168
Q ss_pred ---HHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf ---99999999998610012888689851177657999986630134631111002211003663557999998640156
Q gi|254780767|r 71 ---PQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISIL 147 (383)
Q Consensus 71 ---~~~~~~~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~if 147 (383)
-..-..++++.+.+++.+=|.+|.| |.= .+ .-=.|++
T Consensus 148 RtKI~T~Eq~~~al~~~k~l~LdgLVII------------------GGD-------------dS---------NTnAA~L 187 (566)
T TIGR02477 148 RTKIETEEQFAKALETAKKLKLDGLVII------------------GGD-------------DS---------NTNAALL 187 (566)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEE------------------CCC-------------CC---------HHHHHHH
T ss_conf 5455688899999999876089648997------------------479-------------86---------7999999
Q ss_pred CCCHHHHHCCCCCCEEECCCC
Q ss_conf 774223200255314763882
Q gi|254780767|r 148 PFEKEVMQRLGGPPTTFVGHP 168 (383)
Q Consensus 148 pFE~~~f~k~~~~~~~fVGHP 168 (383)
.|||.+ ++.++..||=|
T Consensus 188 ---AEyF~~-~~~~t~viGVP 204 (566)
T TIGR02477 188 ---AEYFAK-KGLKTQVIGVP 204 (566)
T ss_pred ---HHHHHH-CCCCCEEEEEE
T ss_conf ---999997-38992278640
No 491
>TIGR01399 hrcV type III secretion protein, HrcV family; InterPro: IPR006302 Members of this family are closely homologous to the flagellar biosynthesis protein FlhA and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane. ; GO: 0015031 protein transport, 0016021 integral to membrane.
Probab=23.01 E-value=51 Score=13.46 Aligned_cols=34 Identities=15% Similarity=0.295 Sum_probs=20.9
Q ss_pred CCCCHHH---CCCCCHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 4261242---054898999999999844989999999
Q gi|254780767|r 321 PLVPEYF---NSMIRSEALVRWIERLSQDTLQRRAML 354 (383)
Q Consensus 321 ~ivPEli---Q~~~~~~~i~~~~~~ll~d~~~r~~~~ 354 (383)
.=+|||+ |.-.+..+|++-+.+|++..=--++++
T Consensus 534 ~~ypeLvKEvqR~lpl~ri~evLqRLv~E~vSIRn~R 570 (709)
T TIGR01399 534 REYPELVKEVQRVLPLQRIAEVLQRLVSEQVSIRNLR 570 (709)
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 0448078999740790248999998712798588999
No 492
>pfam06050 HGD-D 2-hydroxyglutaryl-CoA dehydratase, D-component. Degradation of glutamate via the hydroxyglutarate pathway involves the syn-elimination of water from 2-hydroxyglutaryl-CoA. This anaerobic process is catalysed by 2-hydroxyglutaryl-CoA dehydratase, an enzyme with two components (A and D) that reversibly associate during reaction cycles. This component contains one non-reducible [4Fe-4S]2+ cluster and a reduced riboflavin 5'-monophosphate.
Probab=22.97 E-value=51 Score=13.45 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCCEEEE-----ECHHHHHHHHHHHHHHHCCCCCCEE----EECCCCCCCCCCCHH
Q ss_conf 99999986100128886898-----5117765799998663013463111----100221100366355
Q gi|254780767|r 75 FRINQTVELIVSSKPDVLLI-----VDNPDFTHRVAKRVRKKMPNLPIIN----YVCPSVWAWREGRAR 134 (383)
Q Consensus 75 ~~~~~~~~~i~~~~Pd~vi~-----iD~pgFnl~lak~lkk~~~~ipvi~----yv~PqvWAWr~~R~k 134 (383)
+..+.+.+.+++++.|.||. +|.-.+-.+..+..-++. |||++. |.-|+....++-|.+
T Consensus 270 ~r~~~~~~l~~~~~~dgvI~~~~~~C~~~~~~~~~~~~~l~~~-giP~l~ie~D~~d~~~~~~gqi~tR 337 (345)
T pfam06050 270 RRLEYILKLAKEYGADGVIYHTLKFCDPYSGESPLLKKALREA-GIPVLKIETDYVDPRVGDVGQIKTR 337 (345)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCHHHHHHH
T ss_conf 9999999999981999999917278983275499999999976-9987999567888888988999999
No 493
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=22.94 E-value=51 Score=13.45 Aligned_cols=118 Identities=25% Similarity=0.425 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH----HHCCCCEEEEEECCHH----------HHHCCC--------EEEECHHHCCEEEHHHHHHHHHH
Q ss_conf 4789999999999----7389983999971789----------994788--------06504445311013674664599
Q gi|254780767|r 15 GDLLAGDLIKSLK----EMVSYPINLVGVGGPS----------LQKEGL--------VSLFDFSELSVIGIMQVVRHLPQ 72 (383)
Q Consensus 15 GD~~~a~li~~Lk----~~~~~~~~~~giGG~~----------m~~~G~--------~~~~~~~~l~v~G~~evl~~~~~ 72 (383)
|=+-.|.|+.++| +..+..+-|+|-|... |.++|+ -.++|.+-+=.-|--+.-.+-..
T Consensus 5 a~V~lA~linA~k~~gk~l~d~riv~~GAGsAg~gia~~l~~~~~~~G~~~eeA~~~i~~~D~~Gli~~~r~dl~~~k~~ 84 (279)
T cd05312 5 AAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKP 84 (279)
T ss_pred HHHHHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHCEEEEECCCCEEECCCCCCHHHHHH
T ss_conf 99999999999998399876737999797589999999999999985999788617099965887531799986499999
Q ss_pred HHHHHH-----HHHHHCCCCCCCEEEEECHHH--HHHHHHHHHHHHCCCCCCEEEEC-C---------CCCCCCCCCH
Q ss_conf 999999-----998610012888689851177--65799998663013463111100-2---------2110036635
Q gi|254780767|r 73 FIFRIN-----QTVELIVSSKPDVLLIVDNPD--FTHRVAKRVRKKMPNLPIINYVC-P---------SVWAWREGRA 133 (383)
Q Consensus 73 ~~~~~~-----~~~~~i~~~~Pd~vi~iD~pg--Fnl~lak~lkk~~~~ipvi~yv~-P---------qvWAWr~~R~ 133 (383)
+.+... .+.+.++.-+||++|++-.++ |+-.+-+...+.+ .-|+|+=-| | +.+.|..||+
T Consensus 85 ~a~~~~~~~~~~L~e~v~~~kp~vlIG~S~~~g~ft~e~v~~Ma~~~-e~PIIFaLSNPt~~~E~~peda~~~t~G~a 161 (279)
T cd05312 85 FARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSN-ERPIIFALSNPTSKAECTAEDAYKWTDGRA 161 (279)
T ss_pred HHHHCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCC-CCCEEEECCCCCCCCCCCHHHHHHHCCCCE
T ss_conf 98747456899999999724897799806898977999999998459-997799637997667889999986226988
No 494
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=22.91 E-value=52 Score=13.44 Aligned_cols=42 Identities=12% Similarity=0.374 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCCCEEEEE--CHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 99999861001288868985--1177657999986630134631111
Q gi|254780767|r 76 RINQTVELIVSSKPDVLLIV--DNPDFTHRVAKRVRKKMPNLPIINY 120 (383)
Q Consensus 76 ~~~~~~~~i~~~~Pd~vi~i--D~pgFnl~lak~lkk~~~~ipvi~y 120 (383)
...+..+.+...++|.+|+. |.....-.+.+...+ |||++-+
T Consensus 43 ~Q~~~i~~~i~~~vDgIii~p~d~~~~~~~l~~a~~a---GIPVV~~ 86 (273)
T cd06305 43 KQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKRALDA---GIPVVAF 86 (273)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHC---CCCEEEE
T ss_conf 9999999999859999999468714448999999985---9978998
No 495
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=22.89 E-value=38 Score=14.33 Aligned_cols=43 Identities=12% Similarity=0.206 Sum_probs=0.0
Q ss_pred EEHHHHHHHHHHHHHH-------HHHHHHHCCCCCCCEEEEECHHHHHHH
Q ss_conf 0136746645999999-------999986100128886898511776579
Q gi|254780767|r 61 IGIMQVVRHLPQFIFR-------INQTVELIVSSKPDVLLIVDNPDFTHR 103 (383)
Q Consensus 61 ~G~~evl~~~~~~~~~-------~~~~~~~i~~~~Pd~vi~iD~pgFnl~ 103 (383)
+|=+|-|+.|-.+... -.++.+.+.+..---+|+||.+|.|-+
T Consensus 253 igA~eQLk~Ya~ilgvp~~v~~~~~~l~~al~~~~~~dlILIDTaG~s~~ 302 (412)
T PRK05703 253 IGAVEQLKTYAKIMGIPVKVAYDPKELAKALEQLANCDLILIDTAGRSQR 302 (412)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 77999999999971973798479999999998715899799968988978
No 496
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=22.87 E-value=52 Score=13.44 Aligned_cols=75 Identities=13% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 99998610012888689851177657999986630134631111002211003663557999998640156774223
Q gi|254780767|r 77 INQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEV 153 (383)
Q Consensus 77 ~~~~~~~i~~~~Pd~vi~iD~pgFnl~lak~lkk~~~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ifpFE~~~ 153 (383)
+...+..++..+||+|+..-+..-+..+.+..+.. |+..+-..+.-+|.........-....+-+.+..+|..+.
T Consensus 176 fs~~l~~l~~~~pD~v~~~~~g~~~~~~~~q~~~~--gl~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 250 (334)
T cd06356 176 FGSTIQKIQAAKPDFVMSILVGANHLSFYRQWAAA--GLGNIPMASSTLGAQGYEHKRLKPPALKDMYATANYIEEL 250 (334)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHC--CCCCCCEEEEEEECCCHHHHHCCHHHHCCEEEEEECCCCC
T ss_conf 89999999976989999944374289999999986--9976874778642361887730668648879985137656
No 497
>KOG1532 consensus
Probab=22.87 E-value=52 Score=13.44 Aligned_cols=125 Identities=19% Similarity=0.200 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHH
Q ss_conf 36635579999986401567742232002553147638821122100135588897618765565059985387430123
Q gi|254780767|r 129 REGRARKMCAYINQVISILPFEKEVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYK 208 (383)
Q Consensus 129 r~~R~k~~~~~~d~~~~ifpFE~~~f~k~~~~~~~fVGHPl~d~~~~~~~~~~~~~~~~~~~~~~~I~llPGSR~~EI~~ 208 (383)
++|....+.|..-|+-. .+-+.|--+. +.-|.-|--|.-=.+...-++.+.-++.++.++.-++.-| +.
T Consensus 29 GSGKTTF~QrL~~hl~~--~~~ppYviNL-DPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL--------NL 97 (366)
T KOG1532 29 GSGKTTFMQRLNSHLHA--KKTPPYVINL-DPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL--------NL 97 (366)
T ss_pred CCCCHHHHHHHHHHHHH--CCCCCEEEEC-CHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHH--------HH
T ss_conf 78841399999999862--3699808867-8888548886677566543099999983889986403358--------99
Q ss_pred HCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCC
Q ss_conf 05111899987640273512620166336889999996048885055205520357887635523311566888762753
Q gi|254780767|r 209 ILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAASGTVILELALCGIP 288 (383)
Q Consensus 209 ~lP~~l~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~sd~ai~~SGTaTLE~al~g~P 288 (383)
..--|-++++.+.++.+.+.+++.-+|++-+. +...+||++--|.-..--|
T Consensus 98 F~tk~dqv~~~iek~~~~~~~~liDTPGQIE~-----------------------------FtWSAsGsIIte~lass~p 148 (366)
T KOG1532 98 FATKFDQVIELIEKRAEEFDYVLIDTPGQIEA-----------------------------FTWSASGSIITETLASSFP 148 (366)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCCEEE-----------------------------EEECCCCCCHHHHHHHCCC
T ss_conf 99878999999997422047799748880689-----------------------------9842785015866761398
Q ss_pred EEEEC
Q ss_conf 02540
Q gi|254780767|r 289 VVSIY 293 (383)
Q Consensus 289 ~IV~Y 293 (383)
+||+|
T Consensus 149 tvv~Y 153 (366)
T KOG1532 149 TVVVY 153 (366)
T ss_pred EEEEE
T ss_conf 59999
No 498
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=22.82 E-value=33 Score=14.68 Aligned_cols=39 Identities=26% Similarity=0.422 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHC------CCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 1776579999866301------346311110022110036635579999986401
Q gi|254780767|r 97 NPDFTHRVAKRVRKKM------PNLPIINYVCPSVWAWREGRARKMCAYINQVIS 145 (383)
Q Consensus 97 ~pgFnl~lak~lkk~~------~~ipvi~yv~PqvWAWr~~R~k~~~~~~d~~~~ 145 (383)
||+|++-+++--++.. ...|+.+|-+|-+ +|+.+|.+++
T Consensus 39 Ypd~~iDv~~Eq~~L~~aD~Iv~QFPl~Wys~Pal----------lK~W~D~Vl~ 83 (176)
T PRK00871 39 YPDFNIDIAAEQEALSRADLIVWQHPMQWYSIPPL----------LKLWIDKVLS 83 (176)
T ss_pred CCCCCCCHHHHHHHHHHCCEEEEECCHHHCCCCHH----------HHHHHHHHHH
T ss_conf 79986479999999985798999887365058599----------9888999873
No 499
>KOG2091 consensus
Probab=22.77 E-value=52 Score=13.43 Aligned_cols=105 Identities=17% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCEEEEEECCHHHHHCCCEEEECHHHCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE--------
Q ss_conf 999997389983999971789994788065044453110136746645999999999986100128886898--------
Q gi|254780767|r 23 IKSLKEMVSYPINLVGVGGPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLI-------- 94 (383)
Q Consensus 23 i~~Lk~~~~~~~~~~giGG~~m~~~G~~~~~~~~~l~v~G~~evl~~~~~~~~~~~~~~~~i~~~~Pd~vi~-------- 94 (383)
|++++++ ++++.+ -+.+=++++..--+-|.+-+--..-+....+++.+++...|.+|+
T Consensus 133 iralRk~-~~~l~i-------------vPR~~fd~~~~~d~ke~l~ke~l~ekv~~tlv~~ck~~~fdGlVlevwsq~a~ 198 (392)
T KOG2091 133 IRALRKS-GKDLHI-------------VPRFYFDEFTSADLKEFLVKEALREKVGQTLVNFCKKHGFDGLVLEVWSQLAD 198 (392)
T ss_pred HHHHHHH-CCCCEE-------------ECEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHH
T ss_conf 9999973-898354-------------03012443463589998606999999999999999876888564879999999
Q ss_pred ----ECHHHHHHHHHHHHHHHCCCCCCEEEECC-------CCCCCCCCCHHHHHHHHHHH
Q ss_conf ----51177657999986630134631111002-------21100366355799999864
Q gi|254780767|r 95 ----VDNPDFTHRVAKRVRKKMPNLPIINYVCP-------SVWAWREGRARKMCAYINQV 143 (383)
Q Consensus 95 ----iD~pgFnl~lak~lkk~~~~ipvi~yv~P-------qvWAWr~~R~k~~~~~~d~~ 143 (383)
-|.-.+-..++|.+++. ....|+.|+| |.--..+.--.++...+|..
T Consensus 199 ~i~d~~al~~v~hl~k~Lhkq--~l~~iLvvPp~~~~e~~~~~~ft~ee~~~L~~~~d~f 256 (392)
T KOG2091 199 VIADKDALELVEHLGKALHKQ--ELQAILVVPPVIEEENGQLKFFTPEEFSKLVAVYDGF 256 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHE
T ss_conf 875258999999999999874--4179998179876777886757979998898865112
No 500
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=22.75 E-value=52 Score=13.42 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 6459999999999861001288868985
Q gi|254780767|r 68 RHLPQFIFRINQTVELIVSSKPDVLLIV 95 (383)
Q Consensus 68 ~~~~~~~~~~~~~~~~i~~~~Pd~vi~i 95 (383)
.++-+....++++.+.+.+.|||++|.|
T Consensus 66 ~R~a~c~~ald~l~~~i~~akpDV~VIv 93 (328)
T cd07366 66 ARYARCQAALDRLADFIRAARIDVAVIV 93 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 8788999999999999997589889998
Done!