HHsearch alignment for GI: 254780767 and conserved domain: pfam05159
>pfam05159 Capsule_synth Capsule polysaccharide biosynthesis protein. This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS and LipB.
Probab=92.05 E-value=0.27 Score=28.45 Aligned_cols=98 Identities=18% Similarity=0.218 Sum_probs=58.2
Q ss_pred EEEEECCC--CCCHHHHCC---CHHHHHHHHHHCCCCCEEEECCCCCHHHH--HHHHHHHCCC-CCEEEEECCCCHHHHH
Q ss_conf 59985387--430123051---11899987640273512620166336889--9999960488-8505520552035788
Q gi|254780767|r 195 ILLLPGSR--AQEIYKILP---FFESAVASLVKRNPFFRFSLVTVSSQENL--VRCIVSKWDI-SPEIIIDKEQKKQVFM 266 (383)
Q Consensus 195 I~llPGSR--~~EI~~~lP---~~l~~~~~l~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~-~~~i~~~~~~~~~~l~ 266 (383)
T Consensus 119 ~vLvplQv~~D~qI~~~s~~~~~~~~vl~sfa~~~Pda~lv~K~HP~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~Ll~ 198 (268)
T pfam05159 119 IVLVPLQVFDDSSIRLGSAVIDFFLEVLESFAEENPDAQIIIKPHPDVLGGNKYGLITELPGLERVDVIVHDVNLISLLR 198 (268)
T ss_pred EEEEECCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHCCCCEEEEECCCCHHHHHH
T ss_conf 89993678746666369965899999999999878898399968987546776454575455688199936999999998
Q ss_pred HHHHHHCCCHHHHHHHHHHCCCEEEE
Q ss_conf 76355233115668887627530254
Q gi|254780767|r 267 TCNAAMAASGTVILELALCGIPVVSI 292 (383)
Q Consensus 267 ~sd~ai~~SGTaTLE~al~g~P~IV~ 292 (383)
T Consensus 199 ~~~~VvtvnSt~G~eALl~gkpV~~~ 224 (268)
T pfam05159 199 HVDEVVTITSTVGFEALLLGKPVITL 224 (268)
T ss_pred HCCEEEEECCHHHHHHHHCCCCEEEE
T ss_conf 57999996556899999859973894