RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780767|ref|YP_003065180.1| lipid-A-disaccharide synthase [Candidatus Liberibacter asiaticus str. psy62] (383 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 44.5 bits (105), Expect = 4e-05 Identities = 73/384 (19%), Positives = 126/384 (32%), Gaps = 143/384 (37%) Query: 18 LAGDLIKS----LKEMVS--------YP--INLVG-VGGPSLQ--KEGLVSLFDFSELS- 59 L GDLIK L E++ + +N++ + PS K+ L+S +S Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS----IPISC 238 Query: 60 -VIGIMQVVRHL---------P-QFIFRI------NQTVELIVSSKPDVLLIVDNPD-FT 101 +IG++Q+ ++ P + + +Q + + + + D+ + F Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL--VTAV---AIAETDSWESF- 292 Query: 102 HRVAKR---------VRKKM--PN--LPIINYVCPSV----WAWREGRARKMC------- 137 ++ VR PN LP PS+ EG M Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLP------PSILEDSLENNEGVPSPMLSISNLTQ 346 Query: 138 ----AYINQVISILPFEKEVMQRLGGPPTTFV--GHPLS--SSPSILEVYSQRNKQRNTP 189 Y+N+ S LP K+V L V G P S L + ++ K + Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG----LNLTLRKAKAPSGL 402 Query: 190 SQWKKILLLPGS-RAQEI-YKILPFFESAVASLVKRNPFFRFSLVTVSSQ--ENLVRCIV 245 Q +I P S R + + LP VAS PF LV S ++LV+ Sbjct: 403 DQ-SRI---PFSERKLKFSNRFLP-----VAS-----PFHSHLLVPASDLINKDLVK--- 445 Query: 246 SKWDISPEIIIDKEQ-KKQVFMTCNAA-MAASGTVILEL---ALCGIPVVSIYKSEWIVN 300 + + + + V+ T + + + I E + +PV Sbjct: 446 ------NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK---------- 489 Query: 301 FFIFYIKTWTCALPNL----IVDY 320 W I+D+ Sbjct: 490 --------WETTT-QFKATHILDF 504 Score = 44.2 bits (104), Expect = 5e-05 Identities = 36/210 (17%), Positives = 62/210 (29%), Gaps = 72/210 (34%) Query: 58 LSVIG---------IMQVVRHLPQ----FIFRINQTVELIVSSKPDVLLIVDNPDFTHRV 104 LS+ + + HLP I +N L+VS P L + + Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL---------YGL 389 Query: 105 AKRVRK-KMPNLPIINYVCPSVWAWREGRARKMCAYINQVISI-LPF--------EKEVM 154 +RK K P+ + + P RK+ + N+ + + PF + Sbjct: 390 NLTLRKAKAPSGLDQSRI-PF-------SERKL-KFSNRFLPVASPFHSHLLVPASDLIN 440 Query: 155 QRLGGPPTTFVGHPLSSSPSILEVYSQRNKQ--RN-----TPS----------QWKKILL 197 + L +F + P VY + R + +W+ Sbjct: 441 KDLVKNNVSFNAKDIQI-P----VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQ 495 Query: 198 LPGSRAQEIYKILPF---FESAVASLVKRN 224 + IL F S + L RN Sbjct: 496 FKATH------ILDFGPGGASGLGVLTHRN 519 Score = 29.1 bits (65), Expect = 1.6 Identities = 34/207 (16%), Positives = 60/207 (28%), Gaps = 96/207 (46%) Query: 49 LVSLFD--------FSEL--------SVIG--IMQVVRHLPQFIFRINQTVELIVSSKPD 90 LV++F F EL ++G I L + I R E + + + Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI-RTTLDAEKVFTQGLN 214 Query: 91 VLLIVDNPDFTHRVAKRVRKKMPN----------LPIINYVCPSVWAWREGRARKMCAYI 140 +L ++NP T P+ P+I + ++ Y+ Sbjct: 215 ILEWLENPSNT-----------PDKDYLLSIPISCPLIGVI-------------QLAHYV 250 Query: 141 --NQVISILPFEKEVMQRLGGPPTTFVGHP--------LSSSPSILEVYSQRNKQRNTPS 190 +++ P E+ L G T GH ++ + S Sbjct: 251 VTAKLLGFTP--GELRSYLKG--AT--GHSQGLVTAVAIAETDS---------------- 288 Query: 191 QWK----------KILLLPGSRAQEIY 207 W+ +L G R E Y Sbjct: 289 -WESFFVSVRKAITVLFFIGVRCYEAY 314 >3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* Length = 394 Score = 37.1 bits (85), Expect = 0.006 Identities = 38/324 (11%), Positives = 93/324 (28%), Gaps = 47/324 (14%) Query: 54 DFSELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMP 113 + + +++ R + + I+ + + +A K+ Sbjct: 51 AYDKTLDYEVIRWPRSVMLPTPTTAHAMAEIIREREIDNVWFGAAAPLALMAGTA-KQAG 109 Query: 114 NLPII-----NYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQRLGGPPTTFV--- 165 +I + V S+ RK+ ++ + I + + G TF Sbjct: 110 ASKVIASTHGHEVGWSMLPGSRQSLRKIGTEVDVLTYISQYTLRRFKSAFGSHPTFEHLP 169 Query: 166 -GHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRN 224 G + +++ + ++ K A+ ++ Sbjct: 170 SGVDVKRFTPATPEDKSATRKKLGFTDTTPVIACNSRL--VPRKGQDSLIKAMPQVIAAR 227 Query: 225 PFFRFSLVTVSSQENLVRCIVSKWDISPEII--IDKEQKKQVFMTCNAAMAAS------- 275 P + +V E+ +R + + + + + ++ + + + Sbjct: 228 PDAQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGL 287 Query: 276 -----GTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVD-YPLVPEYFNS 329 G V LE CG+PV++ + P + LV E + Sbjct: 288 DVEGLGIVYLEAQACGVPVIA----------------GTSGGAPETVTPATGLVVEGSD- 330 Query: 330 MIRSEALVRWIERLSQDTLQRRAM 353 + L + L D ++R AM Sbjct: 331 ---VDKLSELLIELLDDPIRRAAM 351 >2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A* Length = 413 Score = 33.7 bits (76), Expect = 0.072 Identities = 33/269 (12%), Positives = 76/269 (28%), Gaps = 31/269 (11%) Query: 41 GPSLQKEGLVSLFDFSELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDF 100 + + L S F + + F R N+T+ + +K D+ + + Sbjct: 88 DATPNPKDLQSFKSFKYVMPEEDKDFALQIVPFNDRYNRTIPV---AKHDIFIATAW--W 142 Query: 101 THRVAKRVRKKMPNLPIINYV---------CPSVWAWREGRARKMCAY----INQVISIL 147 T A+R+ + I P + W Y + Sbjct: 143 TAYAAQRIVSWQSDTYGIPPNKILYIIQDFEPGFYQWSSQYVLAESTYKYRGPQIAVFNS 202 Query: 148 PFEKEVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIY 207 K+ G T + + N Q +KI+L+ G + + Sbjct: 203 ELLKQYFNNKGYNFTDEYFFQPK-------INTTLKNYINDKRQKEKIILVYGRPSVK-R 254 Query: 208 KILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISPEIIIDKEQKKQVFMT 267 A+ V++ + +++ + ++ + E + Sbjct: 255 NAFTLIVEALKIFVQKYDRSNEWKIISVGEKHKDIALGKGIHLNSLGKLTLEDYADLLKR 314 Query: 268 CNAAMAAS-----GTVILELALCGIPVVS 291 + ++ LE+A G+ V++ Sbjct: 315 SSIGISLMISPHPSYPPLEMAHFGLRVIT 343 >3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes} Length = 403 Score = 33.6 bits (76), Expect = 0.077 Identities = 29/226 (12%), Positives = 62/226 (27%), Gaps = 12/226 (5%) Query: 77 INQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWAWR-----EG 131 +N E+I + PD++L+ + + + L W E Sbjct: 103 MNGINEVIAAENPDIVLVHGDTTTSFAAGLATFYQQKML-GHVEAGLRTWNKYSPFPEEM 161 Query: 132 RARKMCAYINQVISILPFEKEVMQRLGGPPTT--FVGHPLSSSPSILEVYSQRNKQRNTP 189 + + S KE + G P T G+ + + Sbjct: 162 NRQLTGVMADIHFSPTKQAKENLLAEGKDPATIFVTGNTAIDALKTTVQKDYHHPILENL 221 Query: 190 SQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWD 249 +++L+ R + + + + AV +V+ + + + Sbjct: 222 GD-NRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHLNPAVREKAMAILGG 280 Query: 250 ISPEIIIDKEQKKQV---FMTCNAAMAASGTVILELALCGIPVVSI 292 +I+ SG V E G+PV+ + Sbjct: 281 HERIHLIEPLDAIDFHNFLRKSYLVFTDSGGVQEEAPGMGVPVLVL 326 >3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A* Length = 282 Score = 32.4 bits (72), Expect = 0.19 Identities = 18/225 (8%), Positives = 53/225 (23%) Query: 68 RHLPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSVWA 127 + F ++ P + + + + +K L I +Y Sbjct: 26 KQYSDVSFACLPLEGSLIDEIPYPVYELSSESIYELINLIKEEKFELLIIDHYGISVDDE 85 Query: 128 WREGRARKMCAYINQVISILPFEKEVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQRN 187 + ++ + + + +S + Sbjct: 86 KLIKLETGVKILSFDDEIKPHHCDILLNVNAYAKASDYEGLVPFKCEVRCGFSYALIREE 145 Query: 188 TPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSK 247 + K+ + S + + S+ +K Sbjct: 146 FYQEAKENRKKKYDFFICMGGTDIKNLSLQIASELPKTKIISIATSSSNPNLKKLQKFAK 205 Query: 248 WDISPEIIIDKEQKKQVFMTCNAAMAASGTVILELALCGIPVVSI 292 + + ID E ++ N + ++ +++ E L +I Sbjct: 206 LHNNIRLFIDHENIAKLMNESNKLIISASSLVNEALLLKANFKAI 250 >2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A* Length = 406 Score = 30.6 bits (68), Expect = 0.61 Identities = 31/314 (9%), Positives = 74/314 (23%), Gaps = 60/314 (19%) Query: 68 RHLPQFIFR--INQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSV 125 R + +FR + ++ + +IV + ++ P ++ + Sbjct: 100 RPVEDAMFRWYAAHPPKQLLDWMRESDVIVFESGIAVAFIELAKRVNPAAKLVYRASDGL 159 Query: 126 WAWREGRARKMCAYINQVISILPFEKEVMQRLGGPPTTFVGHPLSSSPSILEVYSQRNKQ 185 I V L SP++ R+ Sbjct: 160 STINVASY------------IEREFDRVAPTLD--------VIALVSPAMAAEVVSRDNV 199 Query: 186 RNTPSQWKKILLLPGSRAQEIYKI-------LPFFESAVASLVKRNPFFRFSLV--TVSS 236 + L G + I + F K P F ++ + Sbjct: 200 FHVGHGVDHNLDQLGDPSPYAEGIHAVAVGSMLFDPEFFVVASKAFPQVTFHVIGSGMGR 259 Query: 237 QENLVRCIVSKWDISPEIIIDKEQKKQVFM------TCNAAMAASGTVILELALCGIPVV 290 ++ ++ I + + + +A S +L+ G+P V Sbjct: 260 HPGYGDNVIVYGEMKHAQTIGYIKHARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAV 319 Query: 291 SIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIRSEALVRWIERLSQDTLQR 350 P +++++ I + + R Sbjct: 320 C----------------PNAVVGPYKSRF--GYTPG-----NADSVIAAITQALEAPRVR 356 Query: 351 RAMLHGFENLWDRM 364 + + DR+ Sbjct: 357 YRQCLNWSDTTDRV 370 >2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A Length = 485 Score = 30.1 bits (66), Expect = 0.78 Identities = 25/202 (12%), Positives = 48/202 (23%), Gaps = 41/202 (20%) Query: 185 QRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCI 244 K L SR + A+ L+++ + Sbjct: 283 AMGLKVDDKVPLFAVVSRLTSQKGL-DLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAA 341 Query: 245 VSKWDISPEIIIDKEQKKQVFMTCNAAMAAS-------GTVILELALCGIPVVSIYKSEW 297 +++ + I + + A + G L G + Sbjct: 342 AAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLV------ 395 Query: 298 IVNFFIFYIKTWTCALPNLIVD---YPLVPEYFNSMI----RSEALVRWIERLSQD---- 346 T L + + D L + + + +L+R I R Sbjct: 396 ----------RRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSRP 445 Query: 347 ----TLQRRAMLHGFENLWDRM 364 +QR+AM F W Sbjct: 446 SLWRFVQRQAMAMDFS--WQVA 465 >2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xmp_A* Length = 416 Score = 30.2 bits (68), Expect = 0.83 Identities = 25/181 (13%), Positives = 48/181 (26%), Gaps = 45/181 (24%) Query: 193 KKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQ---------ENLVRC 243 K I+ +K + + ++ P + LV V + E +R Sbjct: 231 KPIITQVSRFDP--WKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRK 288 Query: 244 IVSKWDISPEIIIDKEQKKQV--------FMTCNAAMAASGTVILELALCGIPVVSIYKS 295 I +D+ + ++V + + G + E G PV+ Sbjct: 289 IGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTEAMWKGKPVIG---- 344 Query: 296 EWIVNFFIFYIKTWTCALPNLIVDYP---LVPEYFNSMIRSEALVRWIERLSQDTLQRRA 352 + IVD LV + V + L + + Sbjct: 345 ------------RAVGGIKFQIVDGETGFLVRDA-------NEAVEVVLYLLKHPEVSKE 385 Query: 353 M 353 M Sbjct: 386 M 386 >2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A* Length = 326 Score = 28.9 bits (63), Expect = 2.1 Identities = 15/187 (8%), Positives = 44/187 (23%), Gaps = 2/187 (1%) Query: 107 RVRKKMPNLPIINYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQRLGGPPTTFVG 166 + K + + + W+ R + N+ I + V + + Sbjct: 95 GLVKSAALVTRLAHGVKHGMDWQTAREPLASLFYNRKHHIAKQQHAVERTRELFAKSLGY 154 Query: 167 HPLSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPF 226 + + + L + + + + + L Sbjct: 155 SKPQTQGDYAIAQHFLTNLPTDAG--EYAVFLHATTRDDKHWPEEHWRELIGLLADSGIR 212 Query: 227 FRFSLVTVSSQENLVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAASGTVILELALCG 286 + +E R + + E +V ++ + A Sbjct: 213 IKLPWGAPHEEERAKRLAEGFAYVEVLPKMSLEGVARVLAGAKFVVSVDTGLSHLTAALD 272 Query: 287 IPVVSIY 293 P +++Y Sbjct: 273 RPNITVY 279 >3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function, ribonuclease D, exonuclease; 2.10A {Bifidobacterium adolescentis ATCC15703} Length = 440 Score = 28.5 bits (63), Expect = 2.8 Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 10/97 (10%) Query: 109 RKKMPNLPIINYVCPSVWAWREGRARKM---CAYI--NQVI----SILPFEKEVMQRLGG 159 ++ + ++W R+ AR+ + + I P + + Sbjct: 224 ITEVMRDRQALAIVRALWTRRDELAREYDIAPTLLLSDSSIIEVAKRKPHNAAQFRSIRS 283 Query: 160 PPTTFVGHPLSSSPSILEVYSQRNKQRNTPSQWKKIL 196 H S + E Y+ ++ PS WK I+ Sbjct: 284 INERVRIHTDSEQDKMFERYAPIQRKI-KPSMWKNII 319 >2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} Length = 394 Score = 27.8 bits (60), Expect = 3.7 Identities = 28/302 (9%), Positives = 68/302 (22%), Gaps = 35/302 (11%) Query: 66 VVRHLPQFIFRINQTVELIVSSKPDVLLIVDNPDFTHRVAKRVRKKMPNLPIINYVCPSV 125 V ++ P + ++ E+ D+L + + + I+ + + Sbjct: 77 VFQYPPYDLALASKMAEVAQRENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTD 136 Query: 126 WAWREGRA------RKMCAYINQVISILPFEKEVMQRLGGPPTTFVGHPLSSSPSILEVY 179 R + V ++ L P + Sbjct: 137 ITVLGSDPSLNNLIRFGIEQSDVVTAVSHSLINETHELVKPNKDIQTVYNFIDERVYFKR 196 Query: 180 SQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQEN 239 ++ + +L+ S K Sbjct: 197 DMTQLKKEYGISESEKILIHISN-----------------FRKVKRVQDVVQAFAKIVTE 239 Query: 240 LVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAASGTVILELALCGIPVVSIYKSEWIV 299 + ++ D I + K + V LA+ + Sbjct: 240 VDAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLM----LLLSEKE 295 Query: 300 NFFIFYIKTWTCALPNLIVDYPLVPEYFNSMIR--------SEALVRWIERLSQDTLQRR 351 +F + ++ C +P + +PE + + +L +D R Sbjct: 296 SFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELHR 355 Query: 352 AM 353 M Sbjct: 356 NM 357 >3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, infectious diseases, isomerase; 2.35A {Vibrio cholerae} Length = 396 Score = 28.0 bits (61), Expect = 4.2 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 6/71 (8%) Query: 193 KKILLLPGSRAQEIYKILPFFESAVASLVKRNPFFRFSLVTVSSQENLVRCIVSKWDISP 252 KK+L++ G+R E K+ P + + ++ F + ++ ++ + I+P Sbjct: 26 KKVLIVFGTRP-EAIKMAP-----LVQQLCQDNRFVAKVCVTGQHREMLDQVLELFSITP 79 Query: 253 EIIIDKEQKKQ 263 + ++ + Q Sbjct: 80 DFDLNIMEPGQ 90 >3fkj_A Putative phosphosugar isomerases; NP_459564.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.12A {Salmonella typhimurium LT2} Length = 347 Score = 27.8 bits (61), Expect = 4.6 Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 6/52 (11%) Query: 249 DISPEIIIDKEQKKQVFMTC----NAAMAASGTVILELALCGIPVVSIYKSE 296 I +I+ + ++ F+ C L+ + V I +E Sbjct: 29 RIISDILGKQNIERVWFVGCGGSLTGFWPGK--YFLDCEASKLAVGYITSNE 78 >3c8e_A YGHU, glutathione S-transferase homologue; glutathione transferase homologue, E. coli; HET: GSH; 1.50A {Escherichia coli} Length = 288 Score = 27.6 bits (60), Expect = 5.0 Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 3/50 (6%) Query: 119 NYVCPSVWAWREGRARKMCAYINQVISILPFEKEVMQRLGGPPTTFVGHP 168 Y VW W + A IN+ +S EK + G P Sbjct: 5 TYQPAKVWTWDKSAGGAF-ANINRPVSGPTHEKTLPV--GKHPLQLYSLG 51 >1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A Length = 485 Score = 27.3 bits (59), Expect = 5.4 Identities = 14/115 (12%), Positives = 28/115 (24%), Gaps = 33/115 (28%) Query: 265 FMTCNAAMAASGTVILELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDY---P 321 + + G L G V T L + ++D Sbjct: 368 AIIIPSRFEPCGLTQLYALRYGCIPVV----------------ARTGGLADTVIDANHAA 411 Query: 322 LVPEYFNSMI----RSEALVRWIERLSQD--------TLQRRAMLHGFENLWDRM 364 L + + + L + I R + +Q+ M W++ Sbjct: 412 LASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQMQKLGMKSDVS--WEKS 464 >3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens} Length = 246 Score = 27.4 bits (60), Expect = 6.3 Identities = 12/110 (10%), Positives = 40/110 (36%), Gaps = 9/110 (8%) Query: 280 LELALCGIPVVSIYKSEWIVNFFIFYIKTWTCALPNLIVDYPLVPEYFNSM------IRS 333 L+ + + + ++ VN +K++ LP+ +V Y + + + + Sbjct: 102 LQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKL 161 Query: 334 EALVRWIERLSQDTLQRRAMLHGFENLWDRMNTKKPAGHMAAEIVLQVLG 383 AL +++ ++ + + ++++ M +E + Sbjct: 162 HALKEVLKKFPKEN---HEVFKYVISHLNKVSHNNKVNLMTSENLSICFW 208 >1uar_A Rhodanese; sulfurtransferase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2 Length = 285 Score = 26.9 bits (58), Expect = 7.0 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 5/64 (7%) Query: 237 QENLVRCIVSKWDISPEIIIDKEQKKQVFMTCNAAMAASGTVILELALCGIPVVSIYK-- 294 + + + + I K+ K + + C A +S + + L G P V Y Sbjct: 211 PDGTFKSAEELRALYEPLGITKD--KDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGS 268 Query: 295 -SEW 297 +EW Sbjct: 269 WTEW 272 >3g68_A Putative phosphosugar isomerase; YP_001089791.1, SIS domain, double-SIS domain protein, structural genomics; HET: MSE CIT; 1.80A {Clostridium difficile 630} Length = 352 Score = 26.9 bits (58), Expect = 7.5 Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 8/81 (9%) Query: 237 QENLVRCIVSKWDISPEIIIDKEQKKQVFMTC----NAAMAASGTVILELALCGIPVVSI 292 +R I+S D + KK + ++ + L+ L I VV + Sbjct: 11 TPVRMREIISNADSLFNEVKRTNLKKIIITGSGTSYHSGVQVQP--YLQ-NLLDIDVVKM 67 Query: 293 YKSEWIVN-FFIFYIKTWTCA 312 Y + F T Sbjct: 68 YPFMITEDTFKFDNENTLVVG 88 >1e4e_A Vancomycin/teicoplanin A-type resistance protein VANA; ligase, cell WALL, antibiotic resistance, membrane, plasmid; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Length = 343 Score = 26.7 bits (58), Expect = 8.5 Identities = 16/102 (15%), Positives = 39/102 (38%), Gaps = 12/102 (11%) Query: 1 MNSLKIAVIAGEISGD-----LLAGDLIKSLKEMVSYPINLVGVG--GPSLQKEGLVSLF 53 MN +K+A++ G S + A ++ ++ + Y +G+ G E + + Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKE-KYEPLYIGITKSGVWKMCEKPCAEW 59 Query: 54 DFSELSVIGIMQVVRHLPQFIFRINQTVELIVSSKPDVLLIV 95 +E ++ + + + + N E+ + DV Sbjct: 60 -ENENCYSAVLSPDKKMHGLLVKKNHEYEI---NHVDVAFSA 97 >2qah_A 2-pyrone-4,6-dicarboxylic acid hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Sphingomonas paucimobilis} Length = 303 Score = 26.9 bits (58), Expect = 9.2 Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 4/63 (6%) Query: 297 WIVNFFIFYIKTWTCALPNLIV---DYPLVPEYFNSMIRSEALVRWIERLSQDTLQRRAM 353 + F + + ++ D+P P +++ +V I R++ + M Sbjct: 223 PPWDDFARSVAPLVADYADRVIWGTDWP-HPNMQDAIPDDGLVVDMIPRIAPTPELQHKM 281 Query: 354 LHG 356 L Sbjct: 282 LVT 284 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.323 0.138 0.415 Gapped Lambda K H 0.267 0.0516 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,396,980 Number of extensions: 160189 Number of successful extensions: 533 Number of sequences better than 10.0: 1 Number of HSP's gapped: 530 Number of HSP's successfully gapped: 31 Length of query: 383 Length of database: 5,693,230 Length adjustment: 94 Effective length of query: 289 Effective length of database: 3,414,294 Effective search space: 986730966 Effective search space used: 986730966 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 57 (26.2 bits)