RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780768|ref|YP_003065181.1| hypothetical protein CLIBASIA_03295 [Candidatus Liberibacter asiaticus str. psy62] (281 letters) >gnl|CDD|148062 pfam06230, DUF1009, Protein of unknown function (DUF1009). Family of uncharacterized bacterial proteins. Length = 212 Score = 209 bits (534), Expect = 9e-55 Identities = 92/217 (42%), Positives = 131/217 (60%), Gaps = 13/217 (5%) Query: 60 ILHQYNIGRIVVAGAIDRRPNVQDLCFSIKDSLRISKMIWQL--VSGGNAAILKASIDLL 117 +L + +V+AGA+ +RP L LR +++ +L + G+ A+L+A I Sbjct: 7 LLKAEGVTEVVMAGAV-KRPAFSPLRPD----LRTLRLLPRLAALRRGDDALLRAVIREF 61 Query: 118 ESYGVSVVGAHEIVPELLVQVGSLGTCVPNRDVKRDILAAMKSAEALSELDVGQSAVSIG 177 E G VVGAHE+ P+LL G L P++ DI + A+AL LD+GQ+ V Sbjct: 62 EEEGFKVVGAHEVAPDLLAPEGVLTRRAPDKSELADIARGAEVAKALGALDIGQAVVVKD 121 Query: 178 GRVVALEGIEGTDSMLQRIVDCRNNGRILAGKSGVLVKMCKSQQDMRADLPSIGAKTVQN 237 G V+A+E IEGTD+ML+R+ G + G+ GVLVK K QD+R DLP+IG T++ Sbjct: 122 GAVLAVEAIEGTDAMLRRV------GELRRGRGGVLVKAPKPGQDLRFDLPTIGPDTIET 175 Query: 238 VIKAGLAGIALEAGKSLVLEKELVKKHADEAGIFVCG 274 +AGLAGIA+EAGK+LVL++E V AD AG+FV G Sbjct: 176 AAEAGLAGIAVEAGKTLVLDREAVIAAADAAGLFVVG 212 >gnl|CDD|162742 TIGR02171, Fb_sc_TIGR02171, Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. Length = 912 Score = 30.2 bits (68), Expect = 0.59 Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 5/77 (6%) Query: 88 IKDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSVVGAHEIVPEL--LVQVGSLGTCV 145 IS Q + N LKA ID GV V+G I P+ GS G Sbjct: 789 ANFDATISDP-GQQIINENMNSLKAFIDETAKKGVKVIGT--IFPQSPGYKNTGSFGRYG 845 Query: 146 PNRDVKRDILAAMKSAE 162 P R + + I+ + K E Sbjct: 846 PRRSIAKKIIDSFKKME 862 >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase. Length = 666 Score = 27.7 bits (61), Expect = 3.9 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Query: 112 ASIDLLESYGV--SVVGAHEIVPELLVQVGSLGTCVPNRDVKRDILAAMK 159 A +L+ YG+ S G +P+ L +G++G VPN D++ + + M+ Sbjct: 410 ACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEME 459 >gnl|CDD|131370 TIGR02317, prpB, methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. Length = 285 Score = 27.0 bits (60), Expect = 6.2 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 11/43 (25%) Query: 232 AKTVQNVIKAGLAGIALE-----------AGKSLVLEKELVKK 263 A+TV+ + AG A + +E GK LV +E+V K Sbjct: 91 ARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDK 133 >gnl|CDD|180618 PRK06552, PRK06552, keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase; Provisional. Length = 213 Score = 26.5 bits (59), Expect = 8.2 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 2/51 (3%) Query: 224 RADLPSIGAKTVQNVIKAGLAGIALEAGKSLVLE--KELVKKHADEAGIFV 272 R + K VIK G+ I + E KELV+ + D+ + + Sbjct: 20 RGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLI 70 >gnl|CDD|183086 PRK11320, prpB, 2-methylisocitrate lyase; Provisional. Length = 292 Score = 26.4 bits (59), Expect = 8.3 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 11/41 (26%) Query: 232 AKTVQNVIKAGLAGIALE-----------AGKSLVLEKELV 261 A+TV+++IKAG A + +E K +V ++E+V Sbjct: 96 ARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMV 136 >gnl|CDD|177658 PLN00020, PLN00020, ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional. Length = 413 Score = 26.2 bits (58), Expect = 8.6 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%) Query: 248 LEAGKSLVLEKELVKKH--ADE 267 LE G LV E+E VK+ +DE Sbjct: 385 LEYGNMLVREQENVKRVQLSDE 406 >gnl|CDD|181473 PRK08565, PRK08565, DNA-directed RNA polymerase subunit B; Provisional. Length = 1103 Score = 26.5 bits (59), Expect = 8.8 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%) Query: 165 SELDVGQSAVSIGGRVVALEG--IEGT 189 S + VGQ SI G+V ALEG ++ T Sbjct: 901 SRMTVGQLLESIAGKVAALEGRFVDAT 927 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.321 0.138 0.394 Gapped Lambda K H 0.267 0.0738 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,506,159 Number of extensions: 289258 Number of successful extensions: 627 Number of sequences better than 10.0: 1 Number of HSP's gapped: 624 Number of HSP's successfully gapped: 23 Length of query: 281 Length of database: 5,994,473 Length adjustment: 92 Effective length of query: 189 Effective length of database: 4,006,537 Effective search space: 757235493 Effective search space used: 757235493 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (25.3 bits)