RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780768|ref|YP_003065181.1| hypothetical protein
CLIBASIA_03295 [Candidatus Liberibacter asiaticus str. psy62]
         (281 letters)



>gnl|CDD|148062 pfam06230, DUF1009, Protein of unknown function (DUF1009).  Family
           of uncharacterized bacterial proteins.
          Length = 212

 Score =  209 bits (534), Expect = 9e-55
 Identities = 92/217 (42%), Positives = 131/217 (60%), Gaps = 13/217 (5%)

Query: 60  ILHQYNIGRIVVAGAIDRRPNVQDLCFSIKDSLRISKMIWQL--VSGGNAAILKASIDLL 117
           +L    +  +V+AGA+ +RP    L       LR  +++ +L  +  G+ A+L+A I   
Sbjct: 7   LLKAEGVTEVVMAGAV-KRPAFSPLRPD----LRTLRLLPRLAALRRGDDALLRAVIREF 61

Query: 118 ESYGVSVVGAHEIVPELLVQVGSLGTCVPNRDVKRDILAAMKSAEALSELDVGQSAVSIG 177
           E  G  VVGAHE+ P+LL   G L    P++    DI    + A+AL  LD+GQ+ V   
Sbjct: 62  EEEGFKVVGAHEVAPDLLAPEGVLTRRAPDKSELADIARGAEVAKALGALDIGQAVVVKD 121

Query: 178 GRVVALEGIEGTDSMLQRIVDCRNNGRILAGKSGVLVKMCKSQQDMRADLPSIGAKTVQN 237
           G V+A+E IEGTD+ML+R+      G +  G+ GVLVK  K  QD+R DLP+IG  T++ 
Sbjct: 122 GAVLAVEAIEGTDAMLRRV------GELRRGRGGVLVKAPKPGQDLRFDLPTIGPDTIET 175

Query: 238 VIKAGLAGIALEAGKSLVLEKELVKKHADEAGIFVCG 274
             +AGLAGIA+EAGK+LVL++E V   AD AG+FV G
Sbjct: 176 AAEAGLAGIAVEAGKTLVLDREAVIAAADAAGLFVVG 212


>gnl|CDD|162742 TIGR02171, Fb_sc_TIGR02171, Fibrobacter succinogenes paralogous
           family TIGR02171.  This model describes a paralogous
           family of the rumen bacterium Fibrobacter succinogenes.
           Eleven members are found in Fibrobacter succinogenes
           S85, averaging over 900 amino acids in length. More than
           half are predicted lipoproteins. The function is
           unknown.
          Length = 912

 Score = 30.2 bits (68), Expect = 0.59
 Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 88  IKDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSVVGAHEIVPEL--LVQVGSLGTCV 145
                 IS    Q +   N   LKA ID     GV V+G   I P+       GS G   
Sbjct: 789 ANFDATISDP-GQQIINENMNSLKAFIDETAKKGVKVIGT--IFPQSPGYKNTGSFGRYG 845

Query: 146 PNRDVKRDILAAMKSAE 162
           P R + + I+ + K  E
Sbjct: 846 PRRSIAKKIIDSFKKME 862


>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase.
          Length = 666

 Score = 27.7 bits (61), Expect = 3.9
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 112 ASIDLLESYGV--SVVGAHEIVPELLVQVGSLGTCVPNRDVKRDILAAMK 159
           A   +L+ YG+  S  G    +P+ L  +G++G  VPN D++ + +  M+
Sbjct: 410 ACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEME 459


>gnl|CDD|131370 TIGR02317, prpB, methylisocitrate lyase.  Members of this family
           are methylisocitrate lyase, also called
           (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate
           pyruvate-lyase. This enzyme acts in propionate
           metabolism. It cleaves a carbon-carbon bond to convert
           2-methylisocitrate to pyruvate plus succinate. Some
           members of this family have been annotated, incorrectly
           it seems, as the related protein
           carboxyphosphoenolpyruvate phosphomutase, which is
           involved in synthesizing the antibiotic bialaphos in
           Streptomyces hygroscopicus.
          Length = 285

 Score = 27.0 bits (60), Expect = 6.2
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 11/43 (25%)

Query: 232 AKTVQNVIKAGLAGIALE-----------AGKSLVLEKELVKK 263
           A+TV+ +  AG A + +E            GK LV  +E+V K
Sbjct: 91  ARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDK 133


>gnl|CDD|180618 PRK06552, PRK06552,
           keto-hydroxyglutarate-aldolase/keto-deoxy-
           phosphogluconate aldolase; Provisional.
          Length = 213

 Score = 26.5 bits (59), Expect = 8.2
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 224 RADLPSIGAKTVQNVIKAGLAGIALEAGKSLVLE--KELVKKHADEAGIFV 272
           R +      K    VIK G+  I +        E  KELV+ + D+  + +
Sbjct: 20  RGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLI 70


>gnl|CDD|183086 PRK11320, prpB, 2-methylisocitrate lyase; Provisional.
          Length = 292

 Score = 26.4 bits (59), Expect = 8.3
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 11/41 (26%)

Query: 232 AKTVQNVIKAGLAGIALE-----------AGKSLVLEKELV 261
           A+TV+++IKAG A + +E             K +V ++E+V
Sbjct: 96  ARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMV 136


>gnl|CDD|177658 PLN00020, PLN00020, ribulose bisphosphate carboxylase/oxygenase
           activase -RuBisCO activase (RCA); Provisional.
          Length = 413

 Score = 26.2 bits (58), Expect = 8.6
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%)

Query: 248 LEAGKSLVLEKELVKKH--ADE 267
           LE G  LV E+E VK+   +DE
Sbjct: 385 LEYGNMLVREQENVKRVQLSDE 406


>gnl|CDD|181473 PRK08565, PRK08565, DNA-directed RNA polymerase subunit B;
           Provisional.
          Length = 1103

 Score = 26.5 bits (59), Expect = 8.8
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 165 SELDVGQSAVSIGGRVVALEG--IEGT 189
           S + VGQ   SI G+V ALEG  ++ T
Sbjct: 901 SRMTVGQLLESIAGKVAALEGRFVDAT 927


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.321    0.138    0.394 

Gapped
Lambda     K      H
   0.267   0.0738    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,506,159
Number of extensions: 289258
Number of successful extensions: 627
Number of sequences better than 10.0: 1
Number of HSP's gapped: 624
Number of HSP's successfully gapped: 23
Length of query: 281
Length of database: 5,994,473
Length adjustment: 92
Effective length of query: 189
Effective length of database: 4,006,537
Effective search space: 757235493
Effective search space used: 757235493
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)