RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780768|ref|YP_003065181.1| hypothetical protein CLIBASIA_03295 [Candidatus Liberibacter asiaticus str. psy62] (281 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 51.9 bits (124), Expect = 2e-07 Identities = 58/386 (15%), Positives = 107/386 (27%), Gaps = 181/386 (46%) Query: 2 KRLLIIAGSGMLPYYVAKAARLKNDEPVIASVL---------------------NECSFD 40 K +I Y A+ + + S L ++ F+ Sbjct: 118 KTKELIKN-----YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY-FE 171 Query: 41 WQDFECRELPLGDFCVLRSILHQYNIGRIVVAGAIDRRPNVQDLCFSIKDSLRISK---- 96 E R+L + ++ I + + +L + +L K Sbjct: 172 ----ELRDL----YQTYHVLVGDL----IKFSA-----ETLSELI---RTTLDAEKVFTQ 211 Query: 97 ----MIW-----------QLVSGGNAAILKAS---IDLLE--SYGVS--VVGAHEIVP-E 133 + W L+S I S I +++ Y V+ ++G P E Sbjct: 212 GLNILEWLENPSNTPDKDYLLS---IPI---SCPLIGVIQLAHYVVTAKLLGFT---PGE 262 Query: 134 LLVQV-GSLG------TCVPNRDVKRDILAAMKSAEALSELDVGQSAVS----IGGR--- 179 L + G+ G T V +A S E+ + A++ IG R Sbjct: 263 LRSYLKGATGHSQGLVTAV--------AIAETDSWESFFVS--VRKAITVLFFIGVRCYE 312 Query: 180 ----------VV--ALEGIEGTDS-ML----------QRIVDCRN--------------N 202 ++ +LE EG S ML Q V+ N N Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372 Query: 203 GR---ILAG--KSGVLVKMCKSQQDMRAD---------------------LPSIGA---- 232 G +++G +S L + + + +A LP + + Sbjct: 373 GAKNLVVSGPPQS--LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP-VASPFHS 429 Query: 233 ---KTVQNVIKAGLAGIALE-AGKSL 254 ++I L + K + Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDI 455 Score = 38.4 bits (89), Expect = 0.002 Identities = 70/303 (23%), Positives = 120/303 (39%), Gaps = 85/303 (28%) Query: 9 GSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQ-YNIG 67 G GM Y +KAA+ V N ++D G F +L +++ N+ Sbjct: 1630 GMGMDLYKTSKAAQ---------DVWNRADNHFKD------TYG-FSILDIVINNPVNL- 1672 Query: 68 RIVVAGAIDR--RPNVQDLCF-SIKD-SLRISKMIWQLVSGGNA-------AILKAS--- 113 I G + R N + F +I D L+ K+ ++ + +L A+ Sbjct: 1673 TIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732 Query: 114 ---IDLLESYGVSVVGAHEIVPELLVQVG-SLGTCVPNRDVKRDILAAMKSAEALSEL-- 167 + L+E + + ++P G SLG LA + S E+L E+ Sbjct: 1733 QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALAS-----LADVMSIESLVEVVF 1787 Query: 168 -------------DVGQS---AVSIG-GRVVALEGIEGTDSMLQRIVDCRNNGRILAGKS 210 ++G+S ++I GRV A E +++R+ G+ ++ Sbjct: 1788 YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV------GK----RT 1837 Query: 211 GVLVKM----CKSQQ-----DMRADLPSIGAKTVQNVIKAGLAGIALEAGKSLVLEKELV 261 G LV++ ++QQ D+RA L ++ V N IK I +E KSL LE+ V Sbjct: 1838 GWLVEIVNYNVENQQYVAAGDLRA-LDTV--TNVLNFIKLQKIDI-IELQKSLSLEE--V 1891 Query: 262 KKH 264 + H Sbjct: 1892 EGH 1894 Score = 36.1 bits (83), Expect = 0.009 Identities = 24/131 (18%), Positives = 39/131 (29%), Gaps = 60/131 (45%) Query: 3 RLLIIAGSGMLPY---YVAKAA-RLKNDE--------------PV--------------- 29 R L +A P+ + A+ + D PV Sbjct: 419 RFLPVA----SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS 474 Query: 30 IASVLNECSF----DWQ-----------DFECRELPLGDFCVLRSILHQYNIG---RIVV 71 I+ + +C W+ DF P G L + H+ G R++V Sbjct: 475 ISERIVDCIIRLPVKWETTTQFKATHILDFG----PGGASG-LGVLTHRNKDGTGVRVIV 529 Query: 72 AGAIDRRPNVQ 82 AG +D P+ Sbjct: 530 AGTLDINPDDD 540 >2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens} Length = 307 Score = 32.9 bits (74), Expect = 0.091 Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 5/71 (7%) Query: 22 RLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLR--SILHQYNIGRIVVAGAIDRRP 79 R P + L R+L +GDF + + +V I R Sbjct: 35 RGGGHRPELLRELQRLHVT---HTVRKLHVGDFVWVAQETNPRDPANPGELVLDHIVERK 91 Query: 80 NVQDLCFSIKD 90 + DLC SI D Sbjct: 92 RLDDLCSSIID 102 >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 Score = 32.3 bits (72), Expect = 0.12 Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 4/84 (4%) Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECS----FDWQDFECRELPLGDFCV 56 MK++ I G + ++A+ + D+ V D + E + D + Sbjct: 21 MKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHAL 80 Query: 57 LRSILHQYNIGRIVVAGAIDRRPN 80 + ++ +V A + P+ Sbjct: 81 VNQLIGDLQPDAVVHTAASYKDPD 104 >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206 Score = 31.0 bits (69), Expect = 0.29 Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 1/55 (1%) Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFC 55 +K++ I +G A ++ V V + + + +GD Sbjct: 3 VKKIAIFGATGQTGLTTLAQA-VQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVL 56 >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 Score = 30.6 bits (67), Expect = 0.40 Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFEC 46 +K++++I SG + + A L V A V + ++ Sbjct: 4 VKKIVLIGASGFVGSALLNEA-LNRGFEVTAVVRHPEKIKIENEHL 48 >2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A Length = 311 Score = 29.1 bits (64), Expect = 1.2 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 7/58 (12%) Query: 43 DFECRELPLGDFCVLR-------SILHQYNIGRIVVAGAIDRRPNVQDLCFSIKDSLR 93 F+ R+L +GDF + + +G+ +V I R + DLC SI D Sbjct: 50 TFDVRKLNVGDFLWVARERVTPVPGQLRPPVGKELVLDYIIERKRMDDLCGSIIDGRF 107 >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomerase; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 Length = 347 Score = 28.8 bits (63), Expect = 1.2 Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 8/78 (10%) Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECS--------FDWQDFECRELPLG 52 M +LLI G G L +A A + + ++ L+ +FE + Sbjct: 1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIR 60 Query: 53 DFCVLRSILHQYNIGRIV 70 + + ++ +Y Sbjct: 61 NKNDVTRLITKYMPDSCF 78 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 28.8 bits (63), Expect = 1.5 Identities = 6/20 (30%), Positives = 11/20 (55%), Gaps = 7/20 (35%) Query: 257 EKELVKK-------HADEAG 269 EK+ +KK +AD++ Sbjct: 18 EKQALKKLQASLKLYADDSA 37 Score = 28.4 bits (62), Expect = 1.7 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 24/49 (48%) Query: 89 KDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSVVGAHEIVPELLVQ 137 K +L+ K L+AS+ L Y A + P L ++ Sbjct: 19 KQALK--K-------------LQASLKL---Y------ADDSAPALAIK 43 >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458 Score = 28.2 bits (62), Expect = 2.3 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 3/92 (3%) Query: 93 RISKMIWQLVSGGNAAILKASIDLLESYGVSVVGAHEIVPELLVQVGSLGTCVPNRDVKR 152 R++ + L+ ++ +L+ V V G LL+ GS +P + Sbjct: 97 RLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPMLPLGG 156 Query: 153 DILAAMKSAEALSELDVGQSAVSIGGRVVALE 184 + + S EAL+ + Q V +GG + LE Sbjct: 157 PV---ISSTEALAPKALPQHLVVVGGGYIGLE 185 >1igw_A Isocitrate lyase; beta barrel; 2.10A {Escherichia coli} SCOP: c.1.12.7 PDB: 3i4e_A Length = 434 Score = 28.0 bits (62), Expect = 2.7 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 12/44 (27%) Query: 232 AKTVQNVIKAGLAGIALE------------AGKSLVLEKELVKK 263 + ++ +I+AG A + E GK LV +E ++K Sbjct: 169 FELMKAMIEAGAAAVHFEDQLASVKKCGHMGGKVLVPTQEAIQK 212 >3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding, prokaryotic SH3 stenotrophomonus maltophilia, metal transport; 1.70A {Stenotrophomonas maltophilia} Length = 85 Score = 27.4 bits (61), Expect = 3.4 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 9/42 (21%) Query: 157 AMKSAEALSELDVGQSAVSIGGRVVALEGIEGTDSMLQRIVD 198 AM LSEL + SAV V +++ + D++ +R+ + Sbjct: 1 AMT----LSELPLHTSAV-----VESVQDLHANDAIARRLRE 33 >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics, protein structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449 Score = 27.4 bits (59), Expect = 3.7 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%) Query: 1 MKRLLIIAGSGMLPYYVA-KAARLKNDEPVI 30 +K+++II G G A + RLK + V Sbjct: 3 LKKVVII-GGGAAGMSAASRVKRLKPEWDVK 32 >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A Length = 299 Score = 27.3 bits (59), Expect = 3.8 Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 5/75 (6%) Query: 2 KRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECS-----FDWQDFECRELPLGDFCV 56 K +++ G+G VA+ V N Q E + D + Sbjct: 6 KLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVI 65 Query: 57 LRSILHQYNIGRIVV 71 + L+ IV Sbjct: 66 MELALNGAYATFIVT 80 >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Length = 321 Score = 27.3 bits (59), Expect = 3.9 Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 1/56 (1%) Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCV 56 M++++I G+G + ++ +A+ L P V Sbjct: 4 MEKIIIYGGTGYIGKFMVRAS-LSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGV 58 >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, structural genomics, protein structure initiative; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313 Score = 27.3 bits (59), Expect = 4.1 Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 2/55 (3%) Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFC 55 M +++ G+G + +V +++E V+ L+ + ++ + E L D Sbjct: 1 MSLIVVTGGAGFIGSHVVDKL-SESNEIVVIDNLSSGNEEFVN-EAARLVKADLA 53 >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Score = 27.2 bits (59), Expect = 4.6 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 16/71 (22%) Query: 76 DRRPNVQDLCFSIKDSLRISKMIWQLVSGGNAAI-------------LKASIDLLESYGV 122 ++++ +D L++ ++ +++SG A + ++D + S GV Sbjct: 23 KAGTQIENIEEDFRDGLKLMLLL-EVISGERLAKPERGKMRVHKISNVNKALDFIASKGV 81 Query: 123 SVV--GAHEIV 131 +V GA EIV Sbjct: 82 KLVSIGAEEIV 92 >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Length = 321 Score = 26.9 bits (58), Expect = 5.0 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 3/66 (4%) Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSI 60 M+ LI +G + Y+A +N E S NE + E L + D ++ + Sbjct: 13 MR-ALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLP--NVEMISLDIMDSQRVKKV 69 Query: 61 LHQYNI 66 + Sbjct: 70 ISDIKP 75 >1gsa_A Glutathione synthetase; ligase; HET: ADP GTT; 2.00A {Escherichia coli B} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A Length = 316 Score = 27.0 bits (59), Expect = 5.4 Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 12/66 (18%) Query: 211 GVLVKMCKSQQDMRADLPSIGAKTVQNVIKAGLAGIALEAGKSLVLEKELVKKHADEAGI 270 + + R +L + G + + IA + G +L E G+ Sbjct: 220 PYCLARIPQGGETRGNL-AAGGRGEPRPLTESDWKIARQIGPTLK-----------EKGL 267 Query: 271 FVCGID 276 G+D Sbjct: 268 IFVGLD 273 >2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7 Length = 98 Score = 26.7 bits (59), Expect = 6.3 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 15/67 (22%) Query: 183 LEGIEG-TDSMLQRIVDCRN-NGRILAGKSGVLVKMCKSQQDMRADLPSIGAKTVQNVIK 240 L ++ Q IV R +G +D+ + I K +++ +K Sbjct: 42 LRSLQRIGPKKAQLIVGWRELHGPF------------SQVEDLE-RVEGITGKQMESFLK 88 Query: 241 AGLAGIA 247 A + G+A Sbjct: 89 ANILGLA 95 >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Length = 330 Score = 26.4 bits (57), Expect = 6.9 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 2/67 (2%) Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDW--QDFECRELPLGDFCVLR 58 M +LI G+G + + K + V+ L D + + L D LR Sbjct: 1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLR 60 Query: 59 SILHQYN 65 + Q N Sbjct: 61 DVFTQEN 67 >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} Length = 411 Score = 26.3 bits (57), Expect = 7.3 Identities = 20/170 (11%), Positives = 50/170 (29%), Gaps = 19/170 (11%) Query: 16 YVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYNIG---RIVVA 72 V + R ++ FD P + + R+++ Sbjct: 226 CVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQ 285 Query: 73 GAIDRRPNVQDLCFSIKDS------LRISKMIWQLVSGGNAAILKASID-------LLES 119 +D L L + ++ ++ I+ +LE Sbjct: 286 EGLDYGIARHKLHGDALVKGIQAMGLETFGDLKHKMNNVLGVVIPQGINGDQARKLMLED 345 Query: 120 YGVSVVGAHEIVPELLVQVGSLGTCVPNRDVKRDILAAMKSAEALSELDV 169 +G+ + + + + ++G++G V L+A++ L+ L Sbjct: 346 FGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMT-TLSALE--AVLNYLKF 392 >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* Length = 321 Score = 26.5 bits (57), Expect = 7.5 Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 12/73 (16%) Query: 2 KRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSIL 61 +R+ I GM+ + + + D ++ + EL L D + Sbjct: 4 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD------------ELNLLDSRAVHDFF 51 Query: 62 HQYNIGRIVVAGA 74 I ++ +A A Sbjct: 52 ASERIDQVYLAAA 64 >1wui_S Periplasmic [NIFE] hydrogenase small subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} SCOP: e.19.1.1 PDB: 1h2r_S 1ubj_S 1ubh_S 1ubl_S 1ubm_S 1ubo_S 1ubr_S 1ubt_S 1ubu_S 1wuh_S* 1ubk_S* 1wuj_S 1wuk_S 1wul_S 1e3d_A* Length = 267 Score = 26.4 bits (58), Expect = 7.5 Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 6/151 (3%) Query: 23 LKNDEPVIASVLNEC-SFDWQDFECRELPLGDFCVLRSILHQYNIGRIVVAGAIDRRPNV 81 L+ EP I +++ + S D+ + L ++ + VV G I N Sbjct: 25 LRAFEPYIDTLILDTLSLDYHETIMAAAGDAAEAALEQAVNSPHGFIAVVEGGIPTAANG 84 Query: 82 QDLCFSIKDSLRISKMI----WQLVSGGNAAILKASIDLLESYGVSVVGAHEIVPELLVQ 137 + L I I +++ G A + G ++ + L V+ Sbjct: 85 IYGKVANHTMLDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTG-AKGVNDALKHLGVK 143 Query: 138 VGSLGTCVPNRDVKRDILAAMKSAEALSELD 168 ++ C PN + +A ELD Sbjct: 144 AINIAGCPPNPYNLVGTIVYYLKNKAAPELD 174 >1h2a_S Hydrogenase; SO ligand, hydrogen metabolism, Mg center, MIR, MAD, oxidoreductase; 1.80A {Desulfovibrio vulgaris str} SCOP: e.19.1.1 Length = 317 Score = 26.4 bits (58), Expect = 8.4 Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 6/152 (3%) Query: 23 LKNDEPVIASVLNE-CSFDWQDFECRELPLGDFCVLRSILHQYNIGRIVVAGAIDRRPNV 81 L+ EP I +++ + S D+ + L ++ + VV G I N Sbjct: 75 LRAFEPYIDTLILDTLSLDYHETIMAAAGDAAEAALEQAVNSPHGFIAVVEGGIPTAANG 134 Query: 82 QDLCFSIKDSLRISKMI----WQLVSGGNAAILKASIDLLESYGVSVVGAHEIVPELLVQ 137 + L I I +++ G A + + G ++ + L V+ Sbjct: 135 IYGKVANHTMLDICSRILPKAQAVIAYGTCAT-FGGVQAAKPNPTGAKGVNDALKHLGVK 193 Query: 138 VGSLGTCVPNRDVKRDILAAMKSAEALSELDV 169 ++ C PN + +A ELD Sbjct: 194 AINIAGCPPNPYNLVGTIVYYLKNKAAPELDS 225 >2g1u_A Hypothetical protein TM1088A; , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: AMP; 1.50A {Thermotoga maritima} Length = 155 Score = 26.3 bits (57), Expect = 9.1 Identities = 16/131 (12%), Positives = 34/131 (25%), Gaps = 12/131 (9%) Query: 6 IIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYN 65 +I G G L +A A V+ +GD ++ Sbjct: 23 VIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGM 82 Query: 66 IGRIVVAGAIDRRPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSVV 125 +V + + + + + +I ++ I + Sbjct: 83 EKADMVFAFTNDDSTNFFISMNARYMFNVENVIARVYDPEKIKIFEE------------N 130 Query: 126 GAHEIVPELLV 136 G I P +L+ Sbjct: 131 GIKTICPAVLM 141 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.321 0.138 0.394 Gapped Lambda K H 0.267 0.0569 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,335,466 Number of extensions: 105708 Number of successful extensions: 335 Number of sequences better than 10.0: 1 Number of HSP's gapped: 332 Number of HSP's successfully gapped: 38 Length of query: 281 Length of database: 5,693,230 Length adjustment: 91 Effective length of query: 190 Effective length of database: 3,487,026 Effective search space: 662534940 Effective search space used: 662534940 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (25.7 bits)