RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780768|ref|YP_003065181.1| hypothetical protein
CLIBASIA_03295 [Candidatus Liberibacter asiaticus str. psy62]
(281 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 51.9 bits (124), Expect = 2e-07
Identities = 58/386 (15%), Positives = 107/386 (27%), Gaps = 181/386 (46%)
Query: 2 KRLLIIAGSGMLPYYVAKAARLKNDEPVIASVL---------------------NECSFD 40
K +I Y A+ + + S L ++ F+
Sbjct: 118 KTKELIKN-----YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY-FE 171
Query: 41 WQDFECRELPLGDFCVLRSILHQYNIGRIVVAGAIDRRPNVQDLCFSIKDSLRISK---- 96
E R+L + ++ I + + +L + +L K
Sbjct: 172 ----ELRDL----YQTYHVLVGDL----IKFSA-----ETLSELI---RTTLDAEKVFTQ 211
Query: 97 ----MIW-----------QLVSGGNAAILKAS---IDLLE--SYGVS--VVGAHEIVP-E 133
+ W L+S I S I +++ Y V+ ++G P E
Sbjct: 212 GLNILEWLENPSNTPDKDYLLS---IPI---SCPLIGVIQLAHYVVTAKLLGFT---PGE 262
Query: 134 LLVQV-GSLG------TCVPNRDVKRDILAAMKSAEALSELDVGQSAVS----IGGR--- 179
L + G+ G T V +A S E+ + A++ IG R
Sbjct: 263 LRSYLKGATGHSQGLVTAV--------AIAETDSWESFFVS--VRKAITVLFFIGVRCYE 312
Query: 180 ----------VV--ALEGIEGTDS-ML----------QRIVDCRN--------------N 202
++ +LE EG S ML Q V+ N N
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 203 GR---ILAG--KSGVLVKMCKSQQDMRAD---------------------LPSIGA---- 232
G +++G +S L + + + +A LP + +
Sbjct: 373 GAKNLVVSGPPQS--LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP-VASPFHS 429
Query: 233 ---KTVQNVIKAGLAGIALE-AGKSL 254
++I L + K +
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDI 455
Score = 38.4 bits (89), Expect = 0.002
Identities = 70/303 (23%), Positives = 120/303 (39%), Gaps = 85/303 (28%)
Query: 9 GSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQ-YNIG 67
G GM Y +KAA+ V N ++D G F +L +++ N+
Sbjct: 1630 GMGMDLYKTSKAAQ---------DVWNRADNHFKD------TYG-FSILDIVINNPVNL- 1672
Query: 68 RIVVAGAIDR--RPNVQDLCF-SIKD-SLRISKMIWQLVSGGNA-------AILKAS--- 113
I G + R N + F +I D L+ K+ ++ + +L A+
Sbjct: 1673 TIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732
Query: 114 ---IDLLESYGVSVVGAHEIVPELLVQVG-SLGTCVPNRDVKRDILAAMKSAEALSEL-- 167
+ L+E + + ++P G SLG LA + S E+L E+
Sbjct: 1733 QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALAS-----LADVMSIESLVEVVF 1787
Query: 168 -------------DVGQS---AVSIG-GRVVALEGIEGTDSMLQRIVDCRNNGRILAGKS 210
++G+S ++I GRV A E +++R+ G+ ++
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV------GK----RT 1837
Query: 211 GVLVKM----CKSQQ-----DMRADLPSIGAKTVQNVIKAGLAGIALEAGKSLVLEKELV 261
G LV++ ++QQ D+RA L ++ V N IK I +E KSL LE+ V
Sbjct: 1838 GWLVEIVNYNVENQQYVAAGDLRA-LDTV--TNVLNFIKLQKIDI-IELQKSLSLEE--V 1891
Query: 262 KKH 264
+ H
Sbjct: 1892 EGH 1894
Score = 36.1 bits (83), Expect = 0.009
Identities = 24/131 (18%), Positives = 39/131 (29%), Gaps = 60/131 (45%)
Query: 3 RLLIIAGSGMLPY---YVAKAA-RLKNDE--------------PV--------------- 29
R L +A P+ + A+ + D PV
Sbjct: 419 RFLPVA----SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS 474
Query: 30 IASVLNECSF----DWQ-----------DFECRELPLGDFCVLRSILHQYNIG---RIVV 71
I+ + +C W+ DF P G L + H+ G R++V
Sbjct: 475 ISERIVDCIIRLPVKWETTTQFKATHILDFG----PGGASG-LGVLTHRNKDGTGVRVIV 529
Query: 72 AGAIDRRPNVQ 82
AG +D P+
Sbjct: 530 AGTLDINPDDD 540
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA
damage, DNA recombination, DNA repair, hydrolase,
magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Length = 307
Score = 32.9 bits (74), Expect = 0.091
Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 22 RLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLR--SILHQYNIGRIVVAGAIDRRP 79
R P + L R+L +GDF + + +V I R
Sbjct: 35 RGGGHRPELLRELQRLHVT---HTVRKLHVGDFVWVAQETNPRDPANPGELVLDHIVERK 91
Query: 80 NVQDLCFSIKD 90
+ DLC SI D
Sbjct: 92 RLDDLCSSIID 102
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 32.3 bits (72), Expect = 0.12
Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECS----FDWQDFECRELPLGDFCV 56
MK++ I G + ++A+ + D+ V D + E + D +
Sbjct: 21 MKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHAL 80
Query: 57 LRSILHQYNIGRIVVAGAIDRRPN 80
+ ++ +V A + P+
Sbjct: 81 VNQLIGDLQPDAVVHTAASYKDPD 104
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM
degradation, flavin reductase, diaphorase, green HAEM
binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP:
c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 31.0 bits (69), Expect = 0.29
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFC 55
+K++ I +G A ++ V V + + + +GD
Sbjct: 3 VKKIAIFGATGQTGLTTLAQA-VQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVL 56
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 30.6 bits (67), Expect = 0.40
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFEC 46
+K++++I SG + + A L V A V + ++
Sbjct: 4 VKKIVLIGASGFVGSALLNEA-LNRGFEVTAVVRHPEKIKIENEHL 48
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA
damage, DNA recombination, DNA repair, hydrolase,
magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Length = 311
Score = 29.1 bits (64), Expect = 1.2
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 43 DFECRELPLGDFCVLR-------SILHQYNIGRIVVAGAIDRRPNVQDLCFSIKDSLR 93
F+ R+L +GDF + + +G+ +V I R + DLC SI D
Sbjct: 50 TFDVRKLNVGDFLWVARERVTPVPGQLRPPVGKELVLDYIIERKRMDDLCGSIIDGRF 107
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomerase; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 28.8 bits (63), Expect = 1.2
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECS--------FDWQDFECRELPLG 52
M +LLI G G L +A A + + ++ L+ +FE +
Sbjct: 1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIR 60
Query: 53 DFCVLRSILHQYNIGRIV 70
+ + ++ +Y
Sbjct: 61 NKNDVTRLITKYMPDSCF 78
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.5
Identities = 6/20 (30%), Positives = 11/20 (55%), Gaps = 7/20 (35%)
Query: 257 EKELVKK-------HADEAG 269
EK+ +KK +AD++
Sbjct: 18 EKQALKKLQASLKLYADDSA 37
Score = 28.4 bits (62), Expect = 1.7
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 24/49 (48%)
Query: 89 KDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSVVGAHEIVPELLVQ 137
K +L+ K L+AS+ L Y A + P L ++
Sbjct: 19 KQALK--K-------------LQASLKL---Y------ADDSAPALAIK 43
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A
{Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 458
Score = 28.2 bits (62), Expect = 2.3
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 93 RISKMIWQLVSGGNAAILKASIDLLESYGVSVVGAHEIVPELLVQVGSLGTCVPNRDVKR 152
R++ + L+ ++ +L+ V V G LL+ GS +P +
Sbjct: 97 RLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPMLPLGG 156
Query: 153 DILAAMKSAEALSELDVGQSAVSIGGRVVALE 184
+ + S EAL+ + Q V +GG + LE
Sbjct: 157 PV---ISSTEALAPKALPQHLVVVGGGYIGLE 185
>1igw_A Isocitrate lyase; beta barrel; 2.10A {Escherichia coli} SCOP:
c.1.12.7 PDB: 3i4e_A
Length = 434
Score = 28.0 bits (62), Expect = 2.7
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 12/44 (27%)
Query: 232 AKTVQNVIKAGLAGIALE------------AGKSLVLEKELVKK 263
+ ++ +I+AG A + E GK LV +E ++K
Sbjct: 169 FELMKAMIEAGAAAVHFEDQLASVKKCGHMGGKVLVPTQEAIQK 212
>3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding,
prokaryotic SH3 stenotrophomonus maltophilia, metal
transport; 1.70A {Stenotrophomonas maltophilia}
Length = 85
Score = 27.4 bits (61), Expect = 3.4
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Query: 157 AMKSAEALSELDVGQSAVSIGGRVVALEGIEGTDSMLQRIVD 198
AM LSEL + SAV V +++ + D++ +R+ +
Sbjct: 1 AMT----LSELPLHTSAV-----VESVQDLHANDAIARRLRE 33
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics, protein structure initiative;
2.75A {Pyrococcus horikoshii}
Length = 449
Score = 27.4 bits (59), Expect = 3.7
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 1 MKRLLIIAGSGMLPYYVA-KAARLKNDEPVI 30
+K+++II G G A + RLK + V
Sbjct: 3 LKKVVII-GGGAAGMSAASRVKRLKPEWDVK 32
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 27.3 bits (59), Expect = 3.8
Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 5/75 (6%)
Query: 2 KRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECS-----FDWQDFECRELPLGDFCV 56
K +++ G+G VA+ V N Q E + D +
Sbjct: 6 KLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVI 65
Query: 57 LRSILHQYNIGRIVV 71
+ L+ IV
Sbjct: 66 MELALNGAYATFIVT 80
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP;
1.80A {Clarkia breweri}
Length = 321
Score = 27.3 bits (59), Expect = 3.9
Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCV 56
M++++I G+G + ++ +A+ L P V
Sbjct: 4 MEKIIIYGGTGYIGKFMVRAS-LSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGV 58
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, structural
genomics, protein structure initiative; HET: NAD; 1.87A
{Archaeoglobus fulgidus}
Length = 313
Score = 27.3 bits (59), Expect = 4.1
Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFC 55
M +++ G+G + +V +++E V+ L+ + ++ + E L D
Sbjct: 1 MSLIVVTGGAGFIGSHVVDKL-SESNEIVVIDNLSSGNEEFVN-EAARLVKADLA 53
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 27.2 bits (59), Expect = 4.6
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 16/71 (22%)
Query: 76 DRRPNVQDLCFSIKDSLRISKMIWQLVSGGNAAI-------------LKASIDLLESYGV 122
++++ +D L++ ++ +++SG A + ++D + S GV
Sbjct: 23 KAGTQIENIEEDFRDGLKLMLLL-EVISGERLAKPERGKMRVHKISNVNKALDFIASKGV 81
Query: 123 SVV--GAHEIV 131
+V GA EIV
Sbjct: 82 KLVSIGAEEIV 92
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain
dehydrogenase/reductase, rossmann fold, oxidoreductase;
HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Length = 321
Score = 26.9 bits (58), Expect = 5.0
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSI 60
M+ LI +G + Y+A +N E S NE + E L + D ++ +
Sbjct: 13 MR-ALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLP--NVEMISLDIMDSQRVKKV 69
Query: 61 LHQYNI 66
+
Sbjct: 70 ISDIKP 75
>1gsa_A Glutathione synthetase; ligase; HET: ADP GTT; 2.00A {Escherichia
coli B} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A
1glv_A
Length = 316
Score = 27.0 bits (59), Expect = 5.4
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 12/66 (18%)
Query: 211 GVLVKMCKSQQDMRADLPSIGAKTVQNVIKAGLAGIALEAGKSLVLEKELVKKHADEAGI 270
+ + R +L + G + + IA + G +L E G+
Sbjct: 220 PYCLARIPQGGETRGNL-AAGGRGEPRPLTESDWKIARQIGPTLK-----------EKGL 267
Query: 271 FVCGID 276
G+D
Sbjct: 268 IFVGLD 273
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix
turn helix motif, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: a.60.2.7
Length = 98
Score = 26.7 bits (59), Expect = 6.3
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 15/67 (22%)
Query: 183 LEGIEG-TDSMLQRIVDCRN-NGRILAGKSGVLVKMCKSQQDMRADLPSIGAKTVQNVIK 240
L ++ Q IV R +G +D+ + I K +++ +K
Sbjct: 42 LRSLQRIGPKKAQLIVGWRELHGPF------------SQVEDLE-RVEGITGKQMESFLK 88
Query: 241 AGLAGIA 247
A + G+A
Sbjct: 89 ANILGLA 95
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose
metabolism, isomerase, NAD, spine; HET: NAD; 2.7A
{Bacillus anthracis}
Length = 330
Score = 26.4 bits (57), Expect = 6.9
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 1 MKRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDW--QDFECRELPLGDFCVLR 58
M +LI G+G + + K + V+ L D + + L D LR
Sbjct: 1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLR 60
Query: 59 SILHQYN 65
+ Q N
Sbjct: 61 DVFTQEN 67
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP;
2.58A {Klebsiella pneumoniae}
Length = 411
Score = 26.3 bits (57), Expect = 7.3
Identities = 20/170 (11%), Positives = 50/170 (29%), Gaps = 19/170 (11%)
Query: 16 YVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYNIG---RIVVA 72
V + R ++ FD P + + R+++
Sbjct: 226 CVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQ 285
Query: 73 GAIDRRPNVQDLCFSIKDS------LRISKMIWQLVSGGNAAILKASID-------LLES 119
+D L L + ++ ++ I+ +LE
Sbjct: 286 EGLDYGIARHKLHGDALVKGIQAMGLETFGDLKHKMNNVLGVVIPQGINGDQARKLMLED 345
Query: 120 YGVSVVGAHEIVPELLVQVGSLGTCVPNRDVKRDILAAMKSAEALSELDV 169
+G+ + + + + ++G++G V L+A++ L+ L
Sbjct: 346 FGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMT-TLSALE--AVLNYLKF 392
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP;
1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A*
1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Length = 321
Score = 26.5 bits (57), Expect = 7.5
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 12/73 (16%)
Query: 2 KRLLIIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSIL 61
+R+ I GM+ + + + D ++ + EL L D +
Sbjct: 4 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD------------ELNLLDSRAVHDFF 51
Query: 62 HQYNIGRIVVAGA 74
I ++ +A A
Sbjct: 52 ASERIDQVYLAAA 64
>1wui_S Periplasmic [NIFE] hydrogenase small subunit; high resolution
[NIFE]hydrogenase, oxidoreductase, NI-A state, unready
state; HET: NFC; 1.04A {Desulfovibrio vulgaris str}
SCOP: e.19.1.1 PDB: 1h2r_S 1ubj_S 1ubh_S 1ubl_S 1ubm_S
1ubo_S 1ubr_S 1ubt_S 1ubu_S 1wuh_S* 1ubk_S* 1wuj_S
1wuk_S 1wul_S 1e3d_A*
Length = 267
Score = 26.4 bits (58), Expect = 7.5
Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 6/151 (3%)
Query: 23 LKNDEPVIASVLNEC-SFDWQDFECRELPLGDFCVLRSILHQYNIGRIVVAGAIDRRPNV 81
L+ EP I +++ + S D+ + L ++ + VV G I N
Sbjct: 25 LRAFEPYIDTLILDTLSLDYHETIMAAAGDAAEAALEQAVNSPHGFIAVVEGGIPTAANG 84
Query: 82 QDLCFSIKDSLRISKMI----WQLVSGGNAAILKASIDLLESYGVSVVGAHEIVPELLVQ 137
+ L I I +++ G A + G ++ + L V+
Sbjct: 85 IYGKVANHTMLDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTG-AKGVNDALKHLGVK 143
Query: 138 VGSLGTCVPNRDVKRDILAAMKSAEALSELD 168
++ C PN + +A ELD
Sbjct: 144 AINIAGCPPNPYNLVGTIVYYLKNKAAPELD 174
>1h2a_S Hydrogenase; SO ligand, hydrogen metabolism, Mg center, MIR, MAD,
oxidoreductase; 1.80A {Desulfovibrio vulgaris str} SCOP:
e.19.1.1
Length = 317
Score = 26.4 bits (58), Expect = 8.4
Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 6/152 (3%)
Query: 23 LKNDEPVIASVLNE-CSFDWQDFECRELPLGDFCVLRSILHQYNIGRIVVAGAIDRRPNV 81
L+ EP I +++ + S D+ + L ++ + VV G I N
Sbjct: 75 LRAFEPYIDTLILDTLSLDYHETIMAAAGDAAEAALEQAVNSPHGFIAVVEGGIPTAANG 134
Query: 82 QDLCFSIKDSLRISKMI----WQLVSGGNAAILKASIDLLESYGVSVVGAHEIVPELLVQ 137
+ L I I +++ G A + + G ++ + L V+
Sbjct: 135 IYGKVANHTMLDICSRILPKAQAVIAYGTCAT-FGGVQAAKPNPTGAKGVNDALKHLGVK 193
Query: 138 VGSLGTCVPNRDVKRDILAAMKSAEALSELDV 169
++ C PN + +A ELD
Sbjct: 194 AINIAGCPPNPYNLVGTIVYYLKNKAAPELDS 225
>2g1u_A Hypothetical protein TM1088A; , structural genomics, joint center
for structural genomics, JCSG, protein structure
initiative, PSI; HET: AMP; 1.50A {Thermotoga maritima}
Length = 155
Score = 26.3 bits (57), Expect = 9.1
Identities = 16/131 (12%), Positives = 34/131 (25%), Gaps = 12/131 (9%)
Query: 6 IIAGSGMLPYYVAKAARLKNDEPVIASVLNECSFDWQDFECRELPLGDFCVLRSILHQYN 65
+I G G L +A A V+ +GD ++
Sbjct: 23 VIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGM 82
Query: 66 IGRIVVAGAIDRRPNVQDLCFSIKDSLRISKMIWQLVSGGNAAILKASIDLLESYGVSVV 125
+V + + + + + +I ++ I +
Sbjct: 83 EKADMVFAFTNDDSTNFFISMNARYMFNVENVIARVYDPEKIKIFEE------------N 130
Query: 126 GAHEIVPELLV 136
G I P +L+
Sbjct: 131 GIKTICPAVLM 141
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.138 0.394
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,335,466
Number of extensions: 105708
Number of successful extensions: 335
Number of sequences better than 10.0: 1
Number of HSP's gapped: 332
Number of HSP's successfully gapped: 38
Length of query: 281
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 190
Effective length of database: 3,487,026
Effective search space: 662534940
Effective search space used: 662534940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.7 bits)