HHsearch alignment for GI: 254780770 and conserved domain: TIGR02278
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN; InterPro: IPR011966 This enzyme is proposed to act in the ring-opening step of phenylacetic acid degradation which follows ligation of the acid with coenzyme A (by PaaF) and hydroxylation by a multicomponent non-heme iron hydroxylase complex (PaaGHIJK). Gene symbols have been standardised in . This enzyme is related to aldehyde dehydrogenases..
Probab=94.32 E-value=0.11 Score=30.50 Aligned_cols=104 Identities=20% Similarity=0.309 Sum_probs=63.6
Q ss_pred EEEECCCEEE-EEEEECCCCHH-H----CCCCC---------CCCCCCH-----HHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 9984697499-99982688831-3----13479---------9950225-----66999986346345443299776302
Q gi|254780770|r 33 VNIQRDESAI-GIKNVTFNEPH-F----MGHFP---------GRPVMPG-----VLILEGMAQTAGAICAIHNGFDQYAP 92 (161)
Q Consensus 33 ~~~~~g~~~~-g~k~v~~~e~f-f----~gHFp---------~~PvmPG-----vLliE~maQ~~~~l~~~~~~~~~~~~ 92 (161)
T Consensus 547 ~~L~~G~~l~t~~R~vt~~dI~~FA~~sGD~FYAH~De~AA~~~P~Fg~RVaHGYlvl---S~AAGLFV----dp~pG-- 617 (690)
T TIGR02278 547 EELEIGDSLATDRRTVTLADIVEFAELSGDTFYAHMDEIAAKESPFFGKRVAHGYLVL---SAAAGLFV----DPAPG-- 617 (690)
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHH---HHHHCCCC----CCCCC--
T ss_conf 1357875113788742789999998605884200168999843867587202688899---99860532----68898--
Q ss_pred EEEE--ECCCCEEEEEEEECCEEEEEEEEEEEE------CC-----EEEEEEEEEE-CCEEEEEEEE
Q ss_conf 6775--236413600221288899999999720------77-----7999999999-9999998999
Q gi|254780770|r 93 PYLM--SIDKARFRKPVFPGDRLEYHVNKVRNR------VD-----LWKFQCCAKV-ENTVVAEAEI 145 (161)
Q Consensus 93 ~~l~--~i~~~kF~~~V~PGd~L~i~~~i~~~~------~~-----~~~~~~~~~v-~~~~va~a~l 145 (161)
T Consensus 618 PvLANYGLe~LRFl~PV~~dDsi~V~LT~Krk~p~~~~~~gekPtG~V~W~~ev~NQ~~~pVA~Y~v 684 (690)
T TIGR02278 618 PVLANYGLENLRFLEPVKPDDSIQVRLTVKRKTPRKEKEYGEKPTGVVEWDVEVVNQNGEPVASYDV 684 (690)
T ss_pred CEEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEH
T ss_conf 5473136776630356799884589984220377778666778874478878997469835776525