HHsearch alignment for GI: 254780770 and conserved domain: cd03443
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=96.61 E-value=0.06 Score=31.98 Aligned_cols=108 Identities=19% Similarity=0.121 Sum_probs=64.2
Q ss_pred EEEEEECCCEEEEEEEECCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 99998469749999982688831313479995022566999986346345443299776302677523641360022128
Q gi|254780770|r 31 KVVNIQRDESAIGIKNVTFNEPHFMGHFPGRPVMPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPG 110 (161)
Q Consensus 31 ~i~~~~~g~~~~g~k~v~~~e~ff~gHFp~~PvmPGvLliE~maQ~~~~l~~~~~~~~~~~~~~l~~i~~~kF~~~V~PG 110 (161)
T Consensus 5 ~~~~~~~g-~~~~~~~~~~--~~~-n~--~g~~HGG~~~--~l~D~~~g~~~~~~~~-~~-~~~vt~~l~i~fl~p~~~- 73 (113)
T cd03443 5 RVVEVGPG-RVVLRLPVRP--RHL-NP--GGIVHGGAIA--TLADTAGGLAALSALP-PG-ALAVTVDLNVNYLRPARG- 73 (113)
T ss_pred EEEEEECC-EEEEEEECCH--HHC-CC--CCCEEHHHHH--HHHHHHHHHHHHHCCC-CC-CCEEEEEEEEEEECCCCC-
T ss_conf 99999799-9999999898--995-99--9948078877--8887889999985156-65-020762157999757899-
Q ss_pred CEEEEEEEEEEEECCEEEEEEEEEEC-CEEEEEEEEEEEE
Q ss_conf 88999999997207779999999999-9999989999998
Q gi|254780770|r 111 DRLEYHVNKVRNRVDLWKFQCCAKVE-NTVVAEAEICAMV 149 (161)
Q Consensus 111 d~L~i~~~i~~~~~~~~~~~~~~~v~-~~~va~a~l~~~i 149 (161)
T Consensus 74 ~~l~~~a~v~~~g~~~~~~~~~i~~~~g~~~A~~~~~~~~ 113 (113)
T cd03443 74 GDLTARARVVKLGRRLAVVEVEVTDEDGKLVATARGTFAV 113 (113)
T ss_pred CEEEEEEEEEEECCCEEEEEEEEEECCCCEEEEEEEEEEC
T ss_conf 7699999999958889999999995999999999999989