HHsearch alignment for GI: 254780770 and conserved domain: cd03445
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=93.02 E-value=0.75 Score=25.40 Aligned_cols=77 Identities=19% Similarity=0.111 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEEECCEEEEEEEEEEEECCEEEEEEEEEECCEEEEEEEE
Q ss_conf 56699998634634544329977630267752364136002212888999999997207779999999999999998999
Q gi|254780770|r 66 GVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDRLEYHVNKVRNRVDLWKFQCCAKVENTVVAEAEI 145 (161)
Q Consensus 66 GvLliE~maQ~~~~l~~~~~~~~~~~~~~l~~i~~~kF~~~V~PGd~L~i~~~i~~~~~~~~~~~~~~~v~~~~va~a~l 145 (161)
T Consensus 17 ~~fGG~~~Aqa~~AA~~-tv~~--~~~---~~S~h~~F~~~g~~~~pi~~~V~~lr~Grs~~tr~V~a~Q~g~~~~~~~~ 90 (94)
T cd03445 17 GVFGGQVLAQALVAAAR-TVPD--DRV---PHSLHSYFLRPGDPDQPIEYEVERLRDGRSFATRRVRAVQNGKVIFTATA 90 (94)
T ss_pred CCHHHHHHHHHHHHHHH-HCCC--CCC---CEEEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEEEEEECCEEEEEEEE
T ss_conf 24427999999999995-3899--876---35899998048889999999999986798679899999989999999999
Q ss_pred EEE
Q ss_conf 999
Q gi|254780770|r 146 CAM 148 (161)
Q Consensus 146 ~~~ 148 (161)
T Consensus 91 sF~ 93 (94)
T cd03445 91 SFQ 93 (94)
T ss_pred EEE
T ss_conf 970