HHsearch alignment for GI: 254780770 and conserved domain: cd03450
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=95.45 E-value=0.22 Score=28.63 Aligned_cols=86 Identities=17% Similarity=0.191 Sum_probs=53.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEEECCEEEEEEEEEEE---ECC--EEEEEEEEE
Q ss_conf 995022566999986346345443299776302677523641360022128889999999972---077--799999999
Q gi|254780770|r 60 GRPVMPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDRLEYHVNKVRN---RVD--LWKFQCCAK 134 (161)
Q Consensus 60 ~~PvmPGvLliE~maQ~~~~l~~~~~~~~~~~~~~l~~i~~~kF~~~V~PGd~L~i~~~i~~~---~~~--~~~~~~~~~ 134 (161)
T Consensus 55 g~tIAHGfltLSl~~~~~~---~-~~~~~~~~~~vNYG~dkvRF~~PV~vGs~vR~~~~l~~v~~~~~g~~~~~~~~tvE 130 (149)
T cd03450 55 GGTIAHGFLTLSLLPALTP---Q-LFRVEGVKMGVNYGLDKVRFPAPVPVGSRVRGRFTLLSVEELKGGGVQVTLEVTVE 130 (149)
T ss_pred CCCCCCHHHHHHHHHHHHH---H-CCCCCCCEEEEECCCCCEEECCCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEE
T ss_conf 8734650669999998875---2-66767843333003352670687567999999999999899189849999999999
Q ss_pred EC--CEEEEEEEEEEEE
Q ss_conf 99--9999989999998
Q gi|254780770|r 135 VE--NTVVAEAEICAMV 149 (161)
Q Consensus 135 v~--~~~va~a~l~~~i 149 (161)
T Consensus 131 ieg~~kPa~vAe~l~~~ 147 (149)
T cd03450 131 IEGEDKPACVAEWISRL 147 (149)
T ss_pred ECCCCCCEEEEEEEEEH
T ss_conf 95898878999885501