RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780770|ref|YP_003065183.1| (3R)-hydroxymyristoyl-ACP
dehydratase [Candidatus Liberibacter asiaticus str. psy62]
         (161 letters)



>gnl|CDD|48033 cd01288, FabZ, FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein
           (ACP) dehydratase that primarily catalyzes the
           dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP,
           the third step in the elongation phase of the bacterial/
           plastid, type II, fatty-acid biosynthesis pathway..
          Length = 131

 Score =  175 bits (445), Expect = 5e-45
 Identities = 65/131 (49%), Positives = 85/131 (64%)

Query: 20  LPHRYPFLLVDKVVNIQRDESAIGIKNVTFNEPHFMGHFPGRPVMPGVLILEGMAQTAGA 79
           LPHRYPFLLVD+V+ ++  +S + IKNVT NEP F GHFPG P+MPGVLI+E +AQ AG 
Sbjct: 1   LPHRYPFLLVDRVLELEPGKSIVAIKNVTINEPFFQGHFPGNPIMPGVLIIEALAQAAGI 60

Query: 80  ICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDRLEYHVNKVRNRVDLWKFQCCAKVENTV 139
           +        +    Y   IDKARFRKPV PGD+L   V  ++ R  + KF+  A V+  +
Sbjct: 61  LGLKSLEDFEGKLVYFAGIDKARFRKPVVPGDQLILEVELLKLRRGIGKFKGKAYVDGKL 120

Query: 140 VAEAEICAMVM 150
           VAEAE+   + 
Sbjct: 121 VAEAELMFAIA 131


>gnl|CDD|31107 COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier
           protein) dehydratases [Lipid metabolism].
          Length = 147

 Score =  156 bits (396), Expect = 3e-39
 Identities = 69/141 (48%), Positives = 89/141 (63%), Gaps = 3/141 (2%)

Query: 12  DIVELMRFLPHRYPFLLVDKVVNIQRDESAI-GIKNVTFNEPHFMGHFPGRPVMPGVLIL 70
           DI E++  LPHRYPFLLVD+V+ I  +   I  IKNVT NEP F GHFPG P+MPGVLIL
Sbjct: 5   DIGEILELLPHRYPFLLVDRVLEIDEEGKRIVAIKNVTINEPFFTGHFPGDPIMPGVLIL 64

Query: 71  EGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDRLEYHVNKVRNRV-DLWKF 129
           E MAQ AG +     G       Y + ID A+F++PV PGD+LE  V  +++R   + K 
Sbjct: 65  EAMAQAAGFLLGWLLGNKGKL-GYFLGIDNAKFKRPVLPGDQLELEVKLLKSRRLGIGKA 123

Query: 130 QCCAKVENTVVAEAEICAMVM 150
           +  A V+  VVAEAE+    +
Sbjct: 124 KGVATVDGKVVAEAELLFAGV 144


>gnl|CDD|48029 cd00493, FabA_FabZ, FabA/Z, beta-hydroxyacyl-acyl carrier protein
           (ACP)-dehydratases: One of several distinct enzyme types
           of the dissociative, type II, fatty acid synthase system
           (found in bacteria and plants) required to complete
           successive cycles of fatty acid elongation. The third
           step of the elongation cycle, the dehydration of
           beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed
           by FabA or FabZ.  FabA is bifunctional and catalyzes an
           additional isomerization reaction of trans-2-acyl-ACP to
           cis-3-acyl-ACP, an essential reaction to unsaturated
           fatty acid synthesis.  FabZ is the primary dehydratase
           that participates in the elongation cycles of saturated
           as well as unsaturated fatty acid biosynthesis, whereas
           FabA is more active in the dehydration of
           beta-hydroxydecanoyl-ACP. The FabA structure is
           homodimeric with two independent active sites located at
           the dimer interface..
          Length = 131

 Score =  151 bits (382), Expect = 1e-37
 Identities = 62/131 (47%), Positives = 75/131 (57%), Gaps = 2/131 (1%)

Query: 21  PHRYPFLLVDKVVNIQRDESAIGIKNVTFNEPHFMGHFPGRPVMPGVLILEGMAQTAGAI 80
           PHRYP LLVD+V+ I      +  KNVT NEP F GHFPG PVMPGVL +E MAQ A A+
Sbjct: 1   PHRYPMLLVDRVLEIDPGGRIVAEKNVTPNEPFFQGHFPGDPVMPGVLGIEAMAQAAAAL 60

Query: 81  CAIHNGFDQYAP--PYLMSIDKARFRKPVFPGDRLEYHVNKVRNRVDLWKFQCCAKVENT 138
             +        P   YL  + K +FR PV PGD L   V  ++ R  L KF   A V+  
Sbjct: 61  AGLLGLGKGNPPRLGYLAGVRKVKFRGPVLPGDTLTLEVELLKVRRGLGKFDGRAYVDGK 120

Query: 139 VVAEAEICAMV 149
           +VAEAE+ A  
Sbjct: 121 LVAEAELMAAA 131


>gnl|CDD|48032 cd01287, FabA, FabA, beta-hydroxydecanoyl-acyl carrier protein
           (ACP)-dehydratase: Bacterial protein of the type II,
           fatty acid synthase system that binds ACP and catalyzes
           both dehydration and isomerization reactions, apparently
           in the same active site. The FabA structure is a
           homodimer with two independent active sites located at
           the dimer interface.  Each active site is tunnel-shaped
           and completely inaccessible to solvent.  No metal ions
           or cofactors are required for ligand binding or
           catalysis..
          Length = 150

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 13/111 (11%)

Query: 25  PFLLVDKVVNIQRDES------AIGIKNVTFNEPHFMGHFPGRPVMPGVLILEGMAQTAG 78
             L++D+V  I               K++  ++  F  HF G PVMPG L LE M Q   
Sbjct: 7   QLLMLDRVTEIDPGGGTFGLGYLRAEKDIDPDDWFFPCHFHGDPVMPGSLGLEAMIQLLQ 66

Query: 79  AICAIHNGFDQYAPPYLMSID----KARFRKPVFPGD---RLEYHVNKVRN 122
                         P          + ++R  + P +     E H+ +V  
Sbjct: 67  FYLIWLGLGTGVDNPRFQGAPGGPGEWKYRGQITPHNKKVTYEVHIKEVGR 117


>gnl|CDD|48035 cd03440, hot_dog, The hotdog fold was initially identified in the
           E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein
           (ACP)-dehydratase) structure and subsequently in 4HBT
           (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A
           number of other seemingly unrelated proteins also share
           the hotdog fold.  These proteins have related, but
           distinct, catalytic activities that include metabolic
           roles such as thioester hydrolysis in fatty acid
           metabolism, and degradation of phenylacetic acid and the
           environmental pollutant 4-chlorobenzoate.  This
           superfamily also includes the PaaI-like protein FapR, a
           non-catalytic bacterial homolog involved in
           transcriptional regulation of fatty acid biosynthesis..
          Length = 100

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 10/102 (9%)

Query: 45  KNVTFNEPHFMGHFPGRPVMPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFR 104
             VT  +    G       + G L+L    + AGA  A   G    A    + +   RF 
Sbjct: 5   LTVTPEDIDGGGI------VHGGLLLALADEAAGAAAARLGGRGLGAVTLSLDV---RFL 55

Query: 105 KPVFPGDRLEYHVNKVRNRVDLWKFQCCAKVEN-TVVAEAEI 145
           +PV PGD L      VR        +   + E+  +VA A  
Sbjct: 56  RPVRPGDTLTVEAEVVRVGRSSVTVEVEVRNEDGKLVATATA 97


>gnl|CDD|48034 cd01289, FabA_like, Domain of unknown function, appears to be
           related to a diverse group of beta-hydroxydecanoyl ACP
           dehydratases (FabA) and beta-hydroxyacyl ACP
           dehydratases (FabZ). This group appears to lack the
           conserved active site histidine of FabA and FabZ..
          Length = 138

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 8/136 (5%)

Query: 18  RFLPHRYPFLLVDKVVNIQRDESAIGIKNVTFNEPHFMGHFPGRPVMPGVLILEGMAQTA 77
             +PH  P  L+D+V++   D+ +I  +     +P F     GR  +P  + +E MAQ  
Sbjct: 5   ALIPHDGPMCLLDRVISW--DDDSIHCRATVHPDPLFPLRAHGR--LPAWVGIEYMAQAI 60

Query: 78  GAICAIHNGFDQYAPP--YLMSIDKARFRKPVFP-GDRLEYHVNKV-RNRVDLWKFQCCA 133
            A   +        P   +L+   K       F  G  L   V ++ +    L  F+C  
Sbjct: 61  AAHGGLLARQQGNPPRPGFLLGSRKYEAHVDRFDLGSTLLIVVAELLQGDSGLGVFECTI 120

Query: 134 KVENTVVAEAEICAMV 149
           + +  V+A   +    
Sbjct: 121 EDQGGVLASGRLNVYQ 136


>gnl|CDD|48043 cd03448, HDE_HSD, HDE_HSD  The R-hydratase-like hot dog fold of the
           17-beta-hydroxysteriod dehydrogenase (HSD), and
           Hydratase-Dehydrogenase-Epimerase (HDE) proteins.  Other
           enzymes with this fold include MaoC dehydratase, and the
           fatty acid synthase beta subunit..
          Length = 122

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 16/78 (20%)

Query: 69  ILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDRLEYHVNKVRNRVDLWK 128
           IL G+     A  A+   F    P    +I K RF  PVFPG+ L         R ++WK
Sbjct: 46  ILHGLCTYGFAARAVLEAFADGDPARFKAI-KVRFSSPVFPGETL---------RTEMWK 95

Query: 129 ------FQCCAKVENTVV 140
                 FQ      + VV
Sbjct: 96  EGNRVIFQTKVVERDVVV 113


>gnl|CDD|48036 cd03441, R_hydratase_like, (R)-hydratase [(R)-specific enoyl-CoA
           hydratase].  Catalyzes the hydration of trans-2-enoyl
           CoA to (R)-3-hydroxyacyl-CoA as part of the PHA
           (polyhydroxyalkanoate) biosynthetic pathway.  The
           structure of the monomer includes a five-strand
           antiparallel beta-sheet wrapped around a central alpha
           helix, referred to as a hot dog fold.  The active site
           lies within a substrate-binding tunnel formed by the
           homodimer.  Other enzymes with this fold include MaoC
           dehydratase, Hydratase-Dehydrogenase-Epimerase protein
           (HDE),  and the fatty acid synthase beta subunit..
          Length = 127

 Score = 36.1 bits (83), Expect = 0.004
 Identities = 16/65 (24%), Positives = 21/65 (32%), Gaps = 1/65 (1%)

Query: 61  RPVMPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDRLEYHVNKV 120
           +    G  I  GM  T      +   +        +     RF  PVFPGD L   V  +
Sbjct: 36  KAAGFGGRIAHGM-LTLSLASGLLVQWLPGTDGANLGSQSVRFLAPVFPGDTLRVEVEVL 94

Query: 121 RNRVD 125
             R  
Sbjct: 95  GKRPS 99


>gnl|CDD|34322 COG4706, COG4706, Predicted 3-hydroxylacyl-(acyl carrier protein)
          dehydratase [Lipid metabolism].
          Length = 161

 Score = 35.4 bits (81), Expect = 0.007
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 19 FLPHRYPFLLVDKVVNIQRDESAIGIKNVTFNEPHFMGHFPGRPVMPGVLILEGMAQTAG 78
          +LPH  P LL+D VV    D+SA     V+ +   F+    G   +P    +E MAQ  G
Sbjct: 15 YLPHSGPMLLLDDVVTWD-DDSARCRATVSPSGAPFL-DPDGN--LPAWFGIELMAQAVG 70

Query: 79 AICAIH 84
                
Sbjct: 71 VHSGWL 76


>gnl|CDD|48037 cd03442, BFIT_BACH, Brown fat-inducible thioesterase (BFIT).  Brain
           acyl-CoA hydrolase (BACH).  These enzymes deacylate
           long-chain fatty acids by hydrolyzing acyl-CoA
           thioesters to free fatty acids and CoA-SH. Eukaryotic
           members of this family are expressed in brain, testis,
           and brown adipose tissues. The archeal and eukaryotic
           members of this family have two tandem copies of the
           conserved hot dog fold, while most bacterial members
           have only one copy..
          Length = 123

 Score = 33.3 bits (76), Expect = 0.036
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 69  ILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDRLEY--HVNKVRN 122
           +LE M + AG     H G          S+D+  F KPV  GD +E    V     
Sbjct: 30  LLEWMDELAGIAAYRHAG----GRVVTASVDRIDFLKPVRVGDVVELSARVVYTGR 81


>gnl|CDD|48046 cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with
           a hot dog fold that belongs to a conserved family of
           proteins found in prokaryotes and archaea but not in
           eukaryotes. FkbR2  has sequence similarity to
           (R)-specific enoyl-CoA hydratase, the peroxisomal
           Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the
           fatty acid synthase beta subunit.  The function of FkbR2
           is unknown..
          Length = 146

 Score = 32.8 bits (75), Expect = 0.044
 Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 21/115 (18%)

Query: 47  VTFNEPHFMGHFPGRPVMPGVLILE---GMAQTAGAICAIHNGFDQYAPPYLMSIDKARF 103
           + F+  +      GR ++  +  L    G++    ++ A+ N          +  D+ RF
Sbjct: 39  LHFDAAYAAKTEFGRRLVNSLFTLSLALGLSVNDTSLTAVAN----------LGYDEVRF 88

Query: 104 RKPVFPGDRL--EYHV-----NKVRNRVDLWKFQCCA-KVENTVVAEAEICAMVM 150
             PVF GD L  E  V     +K R    +   +      +   V   E  A+V 
Sbjct: 89  PAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGYNQDGEPVLSFERTALVP 143


>gnl|CDD|145944 pfam03061, 4HBT, Thioesterase superfamily.  This family contains a
           wide variety of enzymes, principally thioesterases. This
           family includes 4HBT (EC 3.1.2.23) which catalyses the
           final step in the biosynthesis of 4-hydroxybenzoate from
           4-chlorobenzoate in the soil dwelling microbe
           Pseudomonas CBS-3. This family includes various
           cytosolic long-chain acyl-CoA thioester hydrolases.
           Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA
           to CoA and palmitate, they also catalyse the hydrolysis
           of other long chain fatty acyl-CoA thioesters.
          Length = 79

 Score = 32.6 bits (75), Expect = 0.045
 Identities = 10/54 (18%), Positives = 15/54 (27%), Gaps = 4/54 (7%)

Query: 73  MAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDRLEYH--VNKVRNRV 124
           +A  A    A   G         +      F +P   GD L     V ++    
Sbjct: 12  LADEAAGAAARSLGGSGQVVV--VVELNIDFLRPARLGDVLTVEARVVRLGRTS 63


>gnl|CDD|144971 pfam01575, MaoC_dehydratas, MaoC like domain.  The maoC gene is
           part of a operon with maoA which is involved in the
           synthesis of monoamine oxidase. The MaoC protein is
           found to share similarity with a wide variety of
           enzymes; estradiol 17 beta-dehydrogenase 4, peroxisomal
           hydratase-dehydrogenase-epimerase, fatty acid synthase
           beta subunit. Several bacterial proteins that are
           composed solely of this domain have (R)-specific
           enoyl-CoA hydratase activity. This domain is also
           present in the NodN nodulation protein N.
          Length = 123

 Score = 31.9 bits (73), Expect = 0.075
 Identities = 12/26 (46%), Positives = 12/26 (46%)

Query: 98  IDKARFRKPVFPGDRLEYHVNKVRNR 123
               RF  PVFPGD L   V  V  R
Sbjct: 80  GWSVRFTGPVFPGDTLRTEVEVVGKR 105


>gnl|CDD|32213 COG2030, MaoC, Acyl dehydratase [Lipid metabolism].
          Length = 159

 Score = 32.0 bits (72), Expect = 0.086
 Identities = 19/58 (32%), Positives = 25/58 (43%)

Query: 66  GVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDRLEYHVNKVRNR 123
           G  I  GM   A A+  +       +    +  D+ RF KPVFPGD L   V  +  R
Sbjct: 66  GGPIAHGMLTLALAMGLVVAALGDPSVGANLGGDEVRFVKPVFPGDTLRARVEVLDKR 123


>gnl|CDD|48049 cd03454, YdeM, YdeM is a Bacillus subtilis protein that belongs to
           a family of prokaryotic proteins of unkown function.
           YdeM has sequence similarity to the hot-dog fold of
           (R)-specific enoyl-CoA hydratase.   Other enzymes with
           this fold include the peroxisomal
           Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the
           fatty acid synthase beta subunit..
          Length = 140

 Score = 31.3 bits (71), Expect = 0.13
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 98  IDKARFRKPVFPGDRLEYHV 117
           ID+ R+ +PV PGD L   V
Sbjct: 80  IDELRWPRPVRPGDTLSVEV 99


>gnl|CDD|36420 KOG1206, KOG1206, KOG1206, Peroxisomal multifunctional
           beta-oxidation protein and related enzymes [Lipid
           transport and metabolism].
          Length = 272

 Score = 30.4 bits (68), Expect = 0.26
 Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 14/74 (18%)

Query: 69  ILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDRLEYHVNKVRNRVDLWK 128
           IL G+     +   +     Q+ P    +  K RF  PV PGD L          V +WK
Sbjct: 193 ILHGLCTLGFSARIV---GAQFPPAVYKAQ-KVRFSSPVGPGDTL---------LVLVWK 239

Query: 129 FQCCAKVENTVVAE 142
            Q       T V E
Sbjct: 240 -QGLRITFQTYVVE 252


>gnl|CDD|100096 cd05803, PGM_like4, This PGM-like (phosphoglucomutase-like) domain
           is located C-terminal to a mannose-1-phosphate
           guanyltransferase domain in a protein of unknown
           function that is found in both prokaryotes and
           eukaryotes. This domain belongs to the
           alpha-D-phosphohexomutase superfamily which includes
           several related enzymes that catalyze a reversible
           intramolecular phosphoryl transfer on their sugar
           substrates. Members of this superfamily include the
           phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine
           mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
           the bacterial phosphomannomutase ManB, the bacterial
           phosphoglucosamine mutase GlmM, and the bifunctional
           phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
           these enzymes has four domains with a centrally located
           active site formed by four loops, one from each domain.
           All four domains are included in this alignment model..
          Length = 445

 Score = 29.6 bits (67), Expect = 0.45
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 8/76 (10%)

Query: 59  PGRPVMPG-VLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPG--DRLE- 114
            GR  + G  L+L+ +A +   +  I +      P Y +S  K             +LE 
Sbjct: 337 YGRDSLVGIALVLQLLAASGKPLSEIVDEL----PQYYISKTKVTIAGEALERLLKKLEA 392

Query: 115 YHVNKVRNRVDLWKFQ 130
           Y  +   + +D  +  
Sbjct: 393 YFKDAEASTLDGLRLD 408


>gnl|CDD|37974 KOG2763, KOG2763, KOG2763, Acyl-CoA thioesterase [Lipid transport
           and metabolism].
          Length = 357

 Score = 29.2 bits (65), Expect = 0.57
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 6/83 (7%)

Query: 66  GVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDRLEY--HVNKVRNR 123
           G  ++    + A     +         P   S+D   F+KPV  G  L +   V    N+
Sbjct: 219 GGFLMRKALELAEITAKLFCK----GRPATRSVDDIEFQKPVDVGCVLTFSSFVTYTDNK 274

Query: 124 VDLWKFQCCAKVENTVVAEAEIC 146
               + +  A V+++     EI 
Sbjct: 275 SIYVQVKAVASVDSSQGRSREIT 297


>gnl|CDD|48044 cd03449, R_hydratase, (R)-hydratase [(R)-specific enoyl-CoA
           hydratase] catalyzes the hydration of trans-2-enoyl CoA
           to (R)-3-hydroxyacyl-CoA as part of the PHA
           (polyhydroxyalkanoate) biosynthetic pathway.
           (R)-hydratase contains a hot-dog fold similar to those
           of thioesterase II, and beta-hydroxydecanoyl-ACP
           dehydratase, MaoC dehydratase,
           Hydratase-Dehydrogenase-Epimerase protein (HDE), and the
           fatty acid synthase beta subunit.  The active site lies
           within a substrate-binding tunnel formed by the
           (R)-hydratase homodimer.  A subset of the bacterial
           (R)-hydratases contain a C-terminal
           phosphotransacetylase (PTA) domain..
          Length = 128

 Score = 28.6 bits (64), Expect = 0.88
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 11/56 (19%)

Query: 102 RFRKPVFPGDRLEYHV-----NKVRNRVDLWKFQC-CAKVENTVVAEAEICAMVMH 151
           RF +PVF GD +   V      + + RV     +  C      VV E E  A+V+ 
Sbjct: 78  RFLRPVFIGDTVTATVTVTEKREDKKRV---TLETVCTNQNGEVVIEGE--AVVLA 128


>gnl|CDD|48041 cd03446, MaoC_like, MoaC_like    Similar to the MaoC (monoamine
           oxidase C) dehydratase regulatory protein but without
           the N-terminal PutA domain. This protein family has a
           hot-dog fold similar to that of (R)-specific enoyl-CoA
           hydratase, the peroxisomal
           Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the
           fatty acid synthase beta subunit..
          Length = 140

 Score = 27.9 bits (62), Expect = 1.2
 Identities = 27/116 (23%), Positives = 38/116 (32%), Gaps = 23/116 (19%)

Query: 49  FNEPHFMGHFP-----GRPVMPGVLILE---GMAQTAGAICAIHNGFDQYAPPYLMSIDK 100
           +N  H    +      G  +  G+L L    G+ Q  G        F          ID 
Sbjct: 33  WNPIHTDAEYAKKTRFGERIAHGLLTLSIATGLLQRLGVFERTVVAF--------YGIDN 84

Query: 101 ARFRKPVFPGD----RLEYHVNKVRNRVDLWKFQCCAKVEN---TVVAEAEICAMV 149
            RF  PVF GD      E    + ++  D        +V N    VV   E+  +V
Sbjct: 85  LRFLNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVVNQRGEVVQSGEMSLLV 140


>gnl|CDD|112402 pfam03583, LIP, Secretory lipase.  These lipases are expressed and
           secreted during the infection cycle of these pathogens.
           In particular, C. albicans has a large number of
           different lipases, possibly reflecting broad lipolytic
           activity, which may contribute to the persistence and
           virulence of C. albicans in human tissue.
          Length = 291

 Score = 27.4 bits (61), Expect = 2.2
 Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 4/45 (8%)

Query: 25  PFLLVDKVVNIQRDESAIGIKNVTFNEPHFMGHFPGRPV-MPGVL 68
           P   +D +          GI +V F E    GHF    V  P  L
Sbjct: 235 PIADIDALYKNWCAW---GIASVEFAEDLSNGHFTEALVGAPAAL 276


>gnl|CDD|100089 cd03087, PGM_like1, This archaeal PGM-like
           (phosphoglucomutase-like) protein of unknown function
           belongs to the alpha-D-phosphohexomutase superfamily
           which includes several related enzymes that catalyze a
           reversible intramolecular phosphoryl transfer on their
           sugar substrates. The alpha-D-phosphohexomutases include
           several related enzymes that catalyze a reversible
           intramolecular phosphoryl transfer on their sugar
           substrates. Members of this superfamily include the
           phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine
           mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
           the bacterial phosphomannomutase ManB, the bacterial
           phosphoglucosamine mutase GlmM, and the bifunctional
           phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
           these enzymes has four domains with a centrally located
           active site formed by four loops, one from each domain.
           All four domains are included in this alignment model..
          Length = 439

 Score = 27.2 bits (61), Expect = 2.4
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)

Query: 40  SAIGIKNVTFNEPHFMGHFPGRP 62
             +G K +T N  +  G FPGRP
Sbjct: 185 RELGCKVITLNA-NPDGFFPGRP 206


>gnl|CDD|145939 pfam03055, RPE65, Retinal pigment epithelial membrane protein.
           This family represents a retinal pigment epithelial
           membrane receptor which is abundantly expressed in
           retinal pigment epithelium, and binds plasma retinal
           binding protein. The family also includes the sequence
           related neoxanthin cleavage enzyme in plants and
           lignostilbene-alpha,beta-dioxygenase in bacteria.
          Length = 473

 Score = 26.4 bits (59), Expect = 3.5
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 3/27 (11%)

Query: 3   SDLACLDAKDIVE--LMRF-LPHRYPF 26
           S+L  LDAKD  E  + R  LPHR P+
Sbjct: 438 SELLILDAKDFTEGPVARVELPHRVPY 464


>gnl|CDD|163665 cd07422, MPP_ApaH, Escherichia coli ApaH and related proteins,
           metallophosphatase domain.  ApaH (also known as
           symmetrically cleaving Ap4A hydrolase and
           bis(5'nucleosyl)-tetraphosphatase) is a bacterial member
           of the PPP (phosphoprotein phosphatase) family of
           serine/threonine phosphatases that hydrolyzes the
           nucleotide-signaling molecule diadenosine tetraphosphate
           (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A,
           Gp(4)G, and other extending compounds.  Null mutations
           in apaH result in high intracellular levels of Ap(4)A
           which correlate with multiple phenotypes, including a
           decreased expression of catabolite-repressible genes, a
           reduction in the expression of flagellar operons, and an
           increased sensitivity to UV  and heat.  Ap4A hydrolase
           is important in responding to heat shock and oxidative
           stress via regulating the concentration of Ap4A in
           bacteria.  Ap4A hydrolase is also thought to play a role
           in siderophore production, but the mechanism by which
           ApaH interacts with siderophore pathways in unknown.
           The PPP (phosphoprotein phosphatase) family, to which
           ApaH belongs, is one of two known protein phosphatase
           families specific for serine and threonine.  The PPP
           family also includes: PP1, PP2A, PP2B (calcineurin),
           PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and PrpA/PrpB. The
           PPP catalytic domain is defined by three conserved
           motifs (-GDXHG-, -GDXVDRG- and -GNHE-).  The PPP enzyme
           family is ancient with members found in all eukaryotes,
           and in most bacterial and archeal genomes.
           Dephosphorylation of phosphoserines and
           phosphothreonines on target proteins plays a central
           role in the regulation of many cellular processes.  PPPs
           belong to the metallophosphatase (MPP) superfamily.
           MPPs are functionally diverse, but all share a conserved
           domain with an active site consisting of two metal ions
           (usually manganese, iron, or zinc) coordinated with
           octahedral geometry by a cage of histidine, aspartate,
           and asparagine residues. The MPP superfamily includes:
           Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
           debranching enzymes, YfcE-like phosphodiesterases,
           purple acid phosphatases (PAPs), YbbF-like
           UDP-2,3-diacylglucosamine hydrolases, and acid
           sphingomyelinases (ASMases).  The conserved domain is a
           double beta-sheet sandwich with a di-metal active site
           made up of residues located at the C-terminal side of
           the sheets.  This domain is thought to allow for
           productive metal coordination.
          Length = 257

 Score = 26.3 bits (59), Expect = 4.3
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 8   LDAKDIVELMRFLPHRYPFLLVDKVVNI 35
           L+A D  EL+ +L H+ P L  D  + I
Sbjct: 88  LNAPDRDELLDWLRHQ-PLLHRDPELGI 114


>gnl|CDD|31795 COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].
          Length = 157

 Score = 26.0 bits (57), Expect = 4.7
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 9/50 (18%)

Query: 77  AGAICAIHNGFDQYAPPY--LMSIDKARFRKPVFPGDRLEY--HVNKVRN 122
           A AI A      ++A       S+D   F+KPV  GD +     V     
Sbjct: 43  AAAIAAS-----RHAGGRVVTASVDSVDFKKPVRVGDIVCLYARVVYTGR 87


>gnl|CDD|143428 cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde dehydrogenase
           1 and 2, ALDH family 10A8 and 10A9-like.  Present in
           this CD are the Arabidopsis betaine aldehyde
           dehydrogenase (BADH) 1 (chloroplast) and 2
           (mitochondria), also known as, aldehyde dehydrogenase
           family 10 member A8 and aldehyde dehydrogenase family 10
           member A9, respectively, and are putative dehydration-
           and salt-inducible BADHs (EC 1.2.1.8) that catalyze the
           oxidation of betaine aldehyde to the compatible solute
           glycine betaine.
          Length = 456

 Score = 25.8 bits (57), Expect = 6.4
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 65  PGVL-ILEGMAQTAGAICAIHNGFDQYA 91
           PGVL ++ G    AGA  A H G D+ +
Sbjct: 177 PGVLNVVTGTGDEAGAPLAAHPGIDKIS 204


>gnl|CDD|37195 KOG1984, KOG1984, KOG1984, Vesicle coat complex COPII, subunit SFB3
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 1007

 Score = 25.3 bits (55), Expect = 7.3
 Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 58  FPGRPVMPGVLILEGMAQTAGAICAIHNGFDQYAPP 93
           +PGRP  PG     G   +  A  A  +      PP
Sbjct: 96  YPGRPSTPGGPQAGGSQSSFAA--AGPSSGSGTGPP 129


>gnl|CDD|31166 COG0824, FcbC, Predicted thioesterase [General function prediction
           only].
          Length = 137

 Score = 25.2 bits (55), Expect = 8.6
 Identities = 7/45 (15%), Positives = 12/45 (26%)

Query: 101 ARFRKPVFPGDRLEYHVNKVRNRVDLWKFQCCAKVENTVVAEAEI 145
             + +P   GD L                      E+ ++A  E 
Sbjct: 64  IDYLRPARLGDVLTVRTRVEELGGKSLTLGYEIVNEDELLATGET 108


>gnl|CDD|39464 KOG4263, KOG4263, KOG4263, Putative receptor CCR1 [Signal
          transduction mechanisms].
          Length = 299

 Score = 25.0 bits (54), Expect = 9.1
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 8/52 (15%)

Query: 16 LMRFLPHRYPFLLVDKVVNIQRDESAIGI--------KNVTFNEPHFMGHFP 59
          L R L HR   +L      +   +++            ++T+    F+G FP
Sbjct: 4  LSRILLHRSNSVLNSPTFLVAVRQTSANPPPYTPTKEGSLTYKYEQFLGKFP 55


>gnl|CDD|39490 KOG4289, KOG4289, KOG4289, Cadherin EGF LAG seven-pass G-type
            receptor [Signal transduction mechanisms].
          Length = 2531

 Score = 25.0 bits (54), Expect = 9.6
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 32   VVNIQRDESAIGIKNVTFNE--PHFMGHFPGRPVMPGVLILEGMA 74
            V N+Q D   +GI NV+F+       G FP   +   + +L  ++
Sbjct: 1126 VFNVQNDTDVVGILNVSFSALGRGVRGWFPSEDLQEQIYLLTAIS 1170


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.325    0.140    0.438 

Gapped
Lambda     K      H
   0.267   0.0692    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,028,742
Number of extensions: 103405
Number of successful extensions: 289
Number of sequences better than 10.0: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 34
Length of query: 161
Length of database: 6,263,737
Length adjustment: 86
Effective length of query: 75
Effective length of database: 4,405,363
Effective search space: 330402225
Effective search space used: 330402225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.3 bits)