RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780770|ref|YP_003065183.1| (3R)-hydroxymyristoyl-ACP
dehydratase [Candidatus Liberibacter asiaticus str. psy62]
(161 letters)
>d1u1za_ d.38.1.6 (A:) (3R)-hydroxymyristoyl ACP dehydrase FabZ
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 145
Score = 135 bits (342), Expect = 1e-33
Identities = 65/141 (46%), Positives = 84/141 (59%), Gaps = 4/141 (2%)
Query: 12 DIVELMRFLPHRYPFLLVDKVVNIQRD-ESAIGIKNVTFNEPHFMGHFPGRPVMPGVLIL 70
DI E+ +LPHRYPFLLVD+VV + + + KNV+ NEP F GHFP P+MPGVLI+
Sbjct: 3 DINEIREYLPHRYPFLLVDRVVELDIEGKRIRAYKNVSINEPFFNGHFPEHPIMPGVLII 62
Query: 71 EGMAQTAGAICAIHNGFDQYAP--PYLMSIDKARFRKPVFPGDRLEYHVNKVRNRVDLWK 128
E MAQ AG + Y + DK RFR+PV PGD+L+ H + + +WK
Sbjct: 63 EAMAQAAGILGFKMLDVKPADGTLYYFVGSDKLRFRQPVLPGDQLQLHAKFISVKRSIWK 122
Query: 129 FQCCAKVENTVVAEAEI-CAM 148
F C A V++ V AEI CA
Sbjct: 123 FDCHATVDDKPVCSAEIICAE 143
>d1z6ba1 d.38.1.6 (A:84-229) (3R)-hydroxymyristoyl ACP dehydrase
FabZ {Malaria parasite (Plasmodium falciparum) [TaxId:
5833]}
Length = 146
Score = 124 bits (313), Expect = 3e-30
Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 2/135 (1%)
Query: 12 DIVELMRFLPHRYPFLLVDKVVNIQRDESAIGIKNVTFNEPHFMGHFPGRPVMPGVLILE 71
DI ++ + LPHRYPFLLVDKV+ +Q +++ IG+K V+ NEP F GHFP + +MPGVL +E
Sbjct: 5 DIEDIKKILPHRYPFLLVDKVIYMQPNKTIIGLKQVSTNEPFFNGHFPQKQIMPGVLQIE 64
Query: 72 GMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDRLEYHVN--KVRNRVDLWKF 129
+AQ AG +C + + +D R++KPV PGD L N ++ + + K
Sbjct: 65 ALAQLAGILCLKSDDSQKNNLFLFAGVDGVRWKKPVLPGDTLTMQANLISFKSSLGIAKL 124
Query: 130 QCCAKVENTVVAEAE 144
V VV
Sbjct: 125 SGVGYVNGKVVINIS 139
>d1mkaa_ d.38.1.2 (A:) beta-Hydroxydecanol thiol ester dehydrase
{Escherichia coli [TaxId: 562]}
Length = 171
Score = 89.7 bits (222), Expect = 1e-19
Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 14/135 (10%)
Query: 20 LPHRYPFLLVDKVVNIQRDESAIGI------KNVTFNEPHFMGHFPGRPVMPGVLILEGM 73
LP L++D+VV + ++ + F HF G PVMPG L L+ M
Sbjct: 28 LPAP-NMLMMDRVVKMTETGGNFDKGYVEAELDINPDLWFFGCHFIGDPVMPGCLGLDAM 86
Query: 74 AQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGD---RLEYHVNKVRN-RVDLWKF 129
Q G G + + + + +F V P H ++ N R+ +
Sbjct: 87 WQLVG-FYLGWLGGE--GKGRALGVGEVKFTGQVLPTAKKVTYRIHFKRIVNRRLIMGLA 143
Query: 130 QCCAKVENTVVAEAE 144
V+ ++ A
Sbjct: 144 DGEVLVDGRLIYTAS 158
>d2f41a1 d.38.1.5 (A:73-183) Transcription factor FapR, C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 111
Score = 68.1 bits (166), Expect = 4e-13
Identities = 14/119 (11%), Positives = 33/119 (27%), Gaps = 15/119 (12%)
Query: 28 LVDKVVNIQRDESAIGIKNVTFNEPHFMGHFPGRPVMPGVLILEGMAQTAGAICAIHNGF 87
++ ++++++ D+ AI I + + +A
Sbjct: 2 VIGEIIDLELDDQAISILEIKQEHVFSRNQIARGHHLFAQANSLAVAVI----------- 50
Query: 88 DQYAPPYLMSIDKARFRKPVFPGD--RLEYHVNKVRNRVDLWKFQCCAKVENTVVAEAE 144
L + RF + V G+ + V V + + V +V
Sbjct: 51 --DDELALTASADIRFTRQVKQGERVVAKAKVTAVEKEKGRTVVEVNSYVGEEIVFSGR 107
>d1s9ca1 d.38.1.4 (A:164-289) 2-enoyl-coa hydratase domain of
multifunctional peroxisomal
hydratase-dehydrogenase-epimerase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 47.8 bits (113), Expect = 5e-07
Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 14/131 (10%)
Query: 20 LPHRYPFLLVDKVVNIQRDESAIGIKNVT--FNEPHFMGHFPGRPVMPGVLILEGMAQTA 77
+P+R P D V+ + + ++ +N H +F ++ T
Sbjct: 4 IPNRPP----DAVLTDTTSLNQAALYRLSGDWNPLHIDPNFASLAGFDKPILHGLC--TF 57
Query: 78 GAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDRLEYHVNKVRNRVDLWKFQCCAKVEN 137
G KARF KPV+PG L+ + K NR+ FQ +
Sbjct: 58 GFSARRVLQQFADNDVSRFKAVKARFAKPVYPGQTLQTEMWKEGNRI---HFQTKVQETG 114
Query: 138 TVV---AEAEI 145
+V A ++
Sbjct: 115 DIVISNAYVDL 125
>d2b3na1 d.38.1.4 (A:6-159) Hypothetical protein AF1124 {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 154
Score = 36.2 bits (83), Expect = 0.001
Identities = 9/79 (11%), Positives = 22/79 (27%)
Query: 71 EGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDRLEYHVNKVRNRVDLWKFQ 130
+ + + ++ R+ PV GD + + +
Sbjct: 75 GRVVHGMLTTSLVSAAVARLPGTVVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTID 134
Query: 131 CCAKVENTVVAEAEICAMV 149
+ VVAE + ++
Sbjct: 135 VKCYTGDKVVAEGVVKVLI 153
>d1pn2a2 d.38.1.4 (A:152-275) 2-enoyl-coa hydratase domain of
multifunctional peroxisomal
hydratase-dehydrogenase-epimerase {Yeast (Candida
tropicalis) [TaxId: 5482]}
Length = 124
Score = 33.5 bits (76), Expect = 0.010
Identities = 21/101 (20%), Positives = 30/101 (29%), Gaps = 9/101 (8%)
Query: 49 FNEPHFMGHFPGRPVMPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVF 108
N H +F P ++ T G + + KARF VF
Sbjct: 32 RNPLHIDPNFAKGAKFPKPILH--GMCTYGLSAKAL-----IDKFGMFNEIKARFTGIVF 84
Query: 109 PGDRLEYHVNKVRNRVDLWKFQCCAKVENTVVAEAEICAMV 149
PG+ L K + D FQ T+ +V
Sbjct: 85 PGETLRVLAWKESD--DTIVFQTHVVDRGTIAINNAAIKLV 123
>d1q6wa_ d.38.1.4 (A:) Monoamine oxidase regulatory protein
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 151
Score = 30.5 bits (68), Expect = 0.081
Identities = 16/105 (15%), Positives = 33/105 (31%), Gaps = 9/105 (8%)
Query: 51 EPHFMGHFPGRPVMPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPG 110
E F +++ + I + +D + I RF +PVF G
Sbjct: 46 EFAKKTIFGKPIAQGMLVLSIALGMVDQVILSN---YDVSSVIAFFGIKDVRFLRPVFIG 102
Query: 111 DRLEYHV-----NKVRNRVDLWKFQCCAKVEN-TVVAEAEICAMV 149
D + + + ++ K + +V A A++
Sbjct: 103 DTIAASAEVVEKQDFDEKSGVVTYKLEVKNQRGELVLTALYSALI 147
>d1iq6a_ d.38.1.4 (A:) (R)-specific enoyl-CoA hydratase {Aeromonas
caviae [TaxId: 648]}
Length = 132
Score = 28.2 bits (62), Expect = 0.36
Identities = 17/102 (16%), Positives = 28/102 (27%), Gaps = 7/102 (6%)
Query: 52 PHFMGHFPGRPVMPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGD 111
P + I+ GM + + YL F+ PVF GD
Sbjct: 33 PLHLDPAFAATTAFERPIVHGMLLASLFSGLLGQQLPGKGSIYLG--QSLSFKLPVFVGD 90
Query: 112 RLEYH--VNKVRNRVDLWKFQCCAKVEN-TVVAEAEICAMVM 150
+ V +R + + + E A+V
Sbjct: 91 EVTAEVEVTALREDKPIATLTTRIFTQGGALAVTGE--AVVK 130
>d2bi0a2 d.38.1.4 (A:186-337) Hypothetical protein Rv0216/MT0226
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 152
Score = 26.9 bits (59), Expect = 0.94
Identities = 15/100 (15%), Positives = 28/100 (28%), Gaps = 10/100 (10%)
Query: 53 HFMGHFPGRPVMPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDR 112
H GR ++ G + + ++ + PV GD
Sbjct: 52 HHDWRVSGRRLVYGGHTI--------GLALAQATRLLPNLATVLDWESCDHTAPVHEGDT 103
Query: 113 L--EYHVNKVRNRVDLWKFQCCAKVENTVVAEAEICAMVM 150
L E H+ + D + V + +E V+
Sbjct: 104 LYSELHIESAQAHADGGVLGLRSLVYAVSDSASEPDRQVL 143
>d2c2ia1 d.38.1.4 (A:2-150) Hypothetical protein Rv0130
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 149
Score = 26.6 bits (58), Expect = 1.00
Identities = 17/93 (18%), Positives = 23/93 (24%), Gaps = 4/93 (4%)
Query: 52 PHFMGHFPGRPVMPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGD 111
P P + + + G L + RF PV G
Sbjct: 47 PERAAAGPFGTTIAHGFMTLALLPRLQHQMYTVKGVKLAINYGLNKV---RFPAPVPVGS 103
Query: 112 RLEYHVNKVRNRVDLWKFQCCAKVENTVVAEAE 144
R+ + DL A V TV E
Sbjct: 104 RVRATS-SLVGVEDLGNGTVQATVSTTVEVEGS 135
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 476
Score = 26.3 bits (57), Expect = 1.4
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 47 VTFNEPHFMGHFPGRPVMPGVL 68
++ P+F +FP P +L
Sbjct: 69 THWHSPYFFAYFPTASSYPAML 90
>d1vpma_ d.38.1.1 (A:) Acyl-CoA hydrolase BH0798 {Bacillus
halodurans [TaxId: 86665]}
Length = 155
Score = 25.7 bits (56), Expect = 2.0
Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 4/53 (7%)
Query: 69 ILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDRLEYHVNKVR 121
+L + + A H + SID F+ GD LE
Sbjct: 33 VLAYIDEIAALTAMKHAN----SAVVTASIDSVDFKSSATVGDALELEGFVTH 81
>d2bi0a1 d.38.1.4 (A:8-185) Hypothetical protein Rv0216/MT0226
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 178
Score = 25.0 bits (54), Expect = 3.6
Identities = 13/112 (11%), Positives = 20/112 (17%), Gaps = 13/112 (11%)
Query: 49 FNEPHFMGHFPGRPVMPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVF 108
+ AI + RF +
Sbjct: 40 RLRLALDSDLCAAVTGMPGPLAHPGLVCDVAIGQSTLATQ--RVKANLFYRGLRFHRFPA 97
Query: 109 PGDRLEYHV----------NKVRNRVDLWKFQCCAKVEN-TVVAEAEICAMV 149
GD L R L + +V + CAM+
Sbjct: 98 VGDTLYTRTEVVGLRANSPKPGRAPTGLAGLRMTTIDRTDRLVLDFYRCAML 149
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli
[TaxId: 562]}
Length = 444
Score = 24.0 bits (51), Expect = 6.6
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 54 FMGHFPGRPVMPGVLILEGMAQTAGAIC 81
+ FP + G + GM A
Sbjct: 359 AVELFPQYHLEAGTFAIAGMGALLAASI 386
>d1zq1a2 c.88.1.1 (A:76-438) Glutamyl-tRNA(Gln) amidotransferase
subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]}
Length = 363
Score = 23.9 bits (51), Expect = 7.7
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 51 EPHFMGHFPGRPVMPGVLILEGMAQTAGAICAIHN 85
E HF G+P +P V I+ T G I + +
Sbjct: 3 EVHFEALIEGKPGLPEVTII----GTGGTIASRID 33
>d2oafa1 d.38.1.1 (A:1-143) Hypothetical protein Jann0674
{Jannaschia sp. ccs1 [TaxId: 290400]}
Length = 143
Score = 23.6 bits (50), Expect = 7.8
Identities = 9/55 (16%), Positives = 15/55 (27%)
Query: 102 RFRKPVFPGDRLEYHVNKVRNRVDLWKFQCCAKVENTVVAEAEICAMVMHEKKEK 156
F+ PV P L+ H R F+ + + + K
Sbjct: 71 DFKSPVTPRHILKCHTWPTRLGTKSITFRVDGVQDGVTCFVGAFTCVFTIADQFK 125
>d2gvha2 d.38.1.1 (A:147-262) Probable acyl-CoA hydrolase AGR_L_2016
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 116
Score = 23.8 bits (51), Expect = 8.4
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 69 ILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDRLEYHVNKVRNRVDLWK 128
+ M + A + + G L S ++ F + + G+ +E + R
Sbjct: 24 AIAYMTKAAFVAASRYCG----KLVVLASSERIDFARAIEIGEIVEAQAHVERVGRSSMS 79
Query: 129 FQCCAKVENTVVAEAEICA 147
Q EN + E I A
Sbjct: 80 IQTKLWSENLLTGERHITA 98
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.140 0.438
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 617,004
Number of extensions: 27401
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 22
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (22.9 bits)