BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780770|ref|YP_003065183.1| (3R)-hydroxymyristoyl-ACP
dehydratase [Candidatus Liberibacter asiaticus str. psy62]
         (161 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780770|ref|YP_003065183.1| (3R)-hydroxymyristoyl-ACP dehydratase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 161

 Score =  337 bits (865), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 161/161 (100%), Positives = 161/161 (100%)

Query: 1   MISDLACLDAKDIVELMRFLPHRYPFLLVDKVVNIQRDESAIGIKNVTFNEPHFMGHFPG 60
           MISDLACLDAKDIVELMRFLPHRYPFLLVDKVVNIQRDESAIGIKNVTFNEPHFMGHFPG
Sbjct: 1   MISDLACLDAKDIVELMRFLPHRYPFLLVDKVVNIQRDESAIGIKNVTFNEPHFMGHFPG 60

Query: 61  RPVMPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDRLEYHVNKV 120
           RPVMPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDRLEYHVNKV
Sbjct: 61  RPVMPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRKPVFPGDRLEYHVNKV 120

Query: 121 RNRVDLWKFQCCAKVENTVVAEAEICAMVMHEKKEKNESHG 161
           RNRVDLWKFQCCAKVENTVVAEAEICAMVMHEKKEKNESHG
Sbjct: 121 RNRVDLWKFQCCAKVENTVVAEAEICAMVMHEKKEKNESHG 161


>gi|254780460|ref|YP_003064873.1| 3-hydroxydecanoyl-(acyl carrier protein) dehydratase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 172

 Score = 33.1 bits (74), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 46  NVTFNEPHFMGHFPGRPVMPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRK 105
           ++T N   F  HF   PVMPG L L+ + Q  G          +      +S+   +FR 
Sbjct: 60  DITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGW---LGELGKGRAVSVSNIKFRG 116

Query: 106 PVFPGDRL-EYHVN---KVRNRVDLWKFQCCAKVENTVVAEA 143
            V P  +L EY ++    +R RV L       KV    + +A
Sbjct: 117 MVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQA 158


>gi|254780948|ref|YP_003065361.1| DNA repair protein RecO [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 240

 Score = 25.4 bits (54), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 3   SDLACLDAKDIVELMRFLPHRYPFLLVDKVVNI 35
           S L     + IV L RFLP R P L +  ++NI
Sbjct: 84  SSLFLYGLQSIVPLFRFLPEREPCLELYDMLNI 116


>gi|254780222|ref|YP_003064635.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 686

 Score = 22.3 bits (46), Expect = 4.1,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 40  SAIGIKNVTFNEPHFMGH 57
           SA+GI +V   EP F G 
Sbjct: 365 SAVGILSVFIREPEFAGQ 382


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.325    0.140    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,144
Number of Sequences: 1233
Number of extensions: 4210
Number of successful extensions: 13
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 6
length of query: 161
length of database: 328,796
effective HSP length: 67
effective length of query: 94
effective length of database: 246,185
effective search space: 23141390
effective search space used: 23141390
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 35 (18.1 bits)