HHsearch alignment for GI: 254780771 and conserved domain: COG1043
>COG1043 LpxA Acyl-[acyl carrier protein].
Probab=99.86 E-value=9.5e-22 Score=136.75 Aligned_cols=211 Identities=24% Similarity=0.292 Sum_probs=154.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEE-E-E---E--EEE
Q ss_conf 5576543331001565323344200001100112320331122100000002332100233220233-1-0---0--244
Q gi|254780771|r 112 ASSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSS-I-Y---S--SLI 184 (347)
Q Consensus 112 ~~~~~~~I~~~a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~-I-~---~--~iI 184 (347)
T Consensus 5 ~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~I 84 (260)
T COG1043 5 KIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLII 84 (260)
T ss_pred CCCCCEEECCCCCCCCCCEECCEEEECCCCEECCCCEECCCEEEECCCEECCCCEEECCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 45762152787882899888833798897198899588343799677077789879111042898754502798427998
Q ss_pred EECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20100000232134454335566653110444320000244445444433222222111112221112344446503577
Q gi|254780771|r 185 GNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCG 264 (347)
Q Consensus 185 G~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~~ 264 (347)
T Consensus 85 G~~n~IRE~vTi~~G-----T~~g-------~g~T~IGdnnl~May~HVA----HDC~iGn~~ilaNnatLAGHV~igD~ 148 (260)
T COG1043 85 GDNNTIREFVTIHRG-----TVQG-------GGVTRIGDNNLIMAYAHVA----HDCVIGNNCILANNATLAGHVEVGDY 148 (260)
T ss_pred CCCCEEEEEEEEECC-----CCCC-------CEEEEECCCCEEEEEEEEE----CCCEECCCEEEECCCEEECEEEECCE
T ss_conf 899758668898615-----4478-------6159977887898731031----34445671799668668540788778
Q ss_pred EEEEEEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCCCEEEEEEC-CCCEEEEECCHHHHHHHHHHHHHCCH
Q ss_conf 18865556503636569729730687837859888889862532600007-98789982417588897867862282
Q gi|254780771|r 265 CIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIP-AGQQYGGMPARPIGEYLRHMVMLSKP 340 (347)
Q Consensus 265 ~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~~v~-~~~~~~G~pa~~~~~~~~~~~~~~~l 340 (347)
T Consensus 149 aiiGG~saVHQF~rIG~~amiGg~S~v~~D--VpPy~~~~Gn~a~l~GlN~vGlkRrgf~~e~i~alr~ayk~lfr~ 223 (260)
T COG1043 149 AIIGGLSAVHQFVRIGAHAMIGGLSAVSQD--VPPYVIASGNHARLRGLNIVGLKRRGFSREEIHALRKAYKLLFRS 223 (260)
T ss_pred EEECCCCEEEEEEEECCHHEECCCHHHCCC--CCCEEEECCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHEEC
T ss_conf 997475237778897401123441010367--798388528704421213220110699989999999999998018