HHsearch alignment for GI: 254780771 and conserved domain: COG1208
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis].
Probab=99.22 E-value=5e-12 Score=84.05 Aligned_cols=87 Identities=38% Similarity=0.452 Sum_probs=63.9
Q ss_pred CCCCCCCCCCCCCCEEHHHCCCCCCEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCCC
Q ss_conf 01565323344200001100112320331122100000002332100233220233100244201000002321344543
Q gi|254780771|r 123 AFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFG 202 (347)
Q Consensus 123 a~I~~~a~I~~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~iIG~~~~I~~~~vIG~~GFg 202 (347)
T Consensus 256 ~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i-~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~-~-------- 325 (358)
T COG1208 256 AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEI-KNSIIMDNVVIGHGSYIGDSIIGENCKIGA-S-------- 325 (358)
T ss_pred EEEECCEEECCCCEECCCCEECCCCEECCCCEECCCCEE-EEEEEECCCEECCCCEECCEEECCCCEECC-C--------
T ss_conf 388589498269789888486898789999888998778-754887787988888882069818859998-6--------
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC
Q ss_conf 3556665311044432000024444544443322
Q gi|254780771|r 203 YARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRG 236 (347)
Q Consensus 203 f~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg 236 (347)
T Consensus 326 ---------------~-~i~d-~~~g~~~~i~~g 342 (358)
T COG1208 326 ---------------L-IIGD-VVIGINSEILPG 342 (358)
T ss_pred ---------------C-EEEE-EEECCCEEECCC
T ss_conf ---------------1-5701-586366086276