HHsearch alignment for GI: 254780771 and conserved domain: PRK13627
>PRK13627 carnitine operon protein CaiE; Provisional.
Probab=99.93 E-value=2.2e-26 Score=161.90 Aligned_cols=55 Identities=27% Similarity=0.255 Sum_probs=50.4
Q ss_pred CEECCCCEEEECCEEECCEEECCCCEECCCCEEEE--EECCCCEEEEECCHHHHHHH
Q ss_conf 36569729730687837859888889862532600--00798789982417588897
Q gi|254780771|r 277 TYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLK--DIPAGQQYGGMPARPIGEYL 331 (347)
Q Consensus 277 ~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~s~v~~--~v~~~~~~~G~pa~~~~~~~ 331 (347)
T Consensus 89 c~Igd~~lIGmgavVldga~Ig~~~iI~AgslV~~g~~ip~~~L~~G~PAk~vR~lt 145 (196)
T PRK13627 89 CVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKRQLLMGTPARAVRSVS 145 (196)
T ss_pred EEEECCCEECCCCEEECCCEECCCCEECCCCEECCCCCCCCCCEEEECCEEEEECCC
T ss_conf 499489788469799288899999899768645799493898199877816811499