HHsearch alignment for GI: 254780771 and conserved domain: PRK13627
>PRK13627 carnitine operon protein CaiE; Provisional.
Probab=99.72 E-value=3.7e-18 Score=117.26 Aligned_cols=97 Identities=11% Similarity=0.204 Sum_probs=74.2
Q ss_pred EEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 42010000023213445433556665311044432000024444544443322222211111222111234444650357
Q gi|254780771|r 184 IGNSVILHSGVRIGNDGFGYARGVSDIHKIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGC 263 (347)
Q Consensus 184 IG~~~~I~~~~vIG~~GFgf~~~~~~~~~~~~~G~v~Ig~~v~IG~n~tIdrg~~~~t~Ig~~~~id~~v~i~hn~~iG~ 263 (347)
T Consensus 52 IG~~tNIQD~~viH~~~-------~--------~~~~IG~~vtIGH~ail-----------------------hgc~Igd 93 (196)
T PRK13627 52 VQAGANLQDGCIMHGYC-------D--------TDTIVGENGHIGHGAIL-----------------------HGCVIGR 93 (196)
T ss_pred ECCCCEECCCCEEECCC-------C--------CCCEECCCEEECCCEEE-----------------------EEEEEEC
T ss_conf 89986767983781489-------9--------98588898058787299-----------------------6349948
Q ss_pred CEEEEEEEEEECCCEECCCCEEEECCEEECCEEECCCCEECCC-CEEEEEECCCCE
Q ss_conf 7188655565036365697297306878378598888898625-326000079878
Q gi|254780771|r 264 GCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIGDNVQIASK-SGVLKDIPAGQQ 318 (347)
Q Consensus 264 ~~~~~~~~~~~g~~~ig~~~~ig~~~~i~~~v~ig~~~~i~a~-s~v~~~v~~~~~ 318 (347)
T Consensus 94 ~~lIGmgavVldga~Ig~~~iI~AgslV~~g~~ip~~~L~~G~PAk~vR~lt~~ei 149 (196)
T PRK13627 94 DALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKRQLLMGTPARAVRSVSDQEL 149 (196)
T ss_pred CCEECCCCEEECCCEECCCCEECCCCEECCCCCCCCCCEEEECCEEEEECCCHHHH
T ss_conf 97884697992888999998997686457994938981998778168114999999